Mutagenetix > Incidental Mutation

Incidental Mutation 'R7497:Nolc1'

581173

Institutional Source

Beutler Lab

Gene Symbol

Nolc1

Ensembl Gene

ENSMUSG00000015176

Gene Name

nucleolar and coiled-body phosphoprotein 1

Synonyms

3230402K17Rik, P130, NOPP140

MMRRC Submission

045570-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7497 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

46064302-46073969 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 46071257 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 402 (K402R)

Ref Sequence

ENSEMBL: ENSMUSP00000128331 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000165017] [ENSMUST00000223728] [ENSMUST00000223741] [ENSMUST00000224490] [ENSMUST00000225780]

AlphaFold

E9Q5C9

Predicted Effect

probably benign
Transcript: ENSMUST00000165017
AA Change: K402R

PolyPhen 2 Score 0.226 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000128331
Gene: ENSMUSG00000015176
AA Change: K402R

Domain	Start	End	E-Value	Type
LisH	10	42	2.3e-2	SMART
low complexity region	76	100	N/A	INTRINSIC
low complexity region	123	187	N/A	INTRINSIC
low complexity region	189	210	N/A	INTRINSIC
low complexity region	224	272	N/A	INTRINSIC
low complexity region	273	285	N/A	INTRINSIC
low complexity region	297	313	N/A	INTRINSIC
low complexity region	315	328	N/A	INTRINSIC
low complexity region	329	342	N/A	INTRINSIC
low complexity region	353	383	N/A	INTRINSIC
low complexity region	429	470	N/A	INTRINSIC
low complexity region	472	486	N/A	INTRINSIC
low complexity region	489	501	N/A	INTRINSIC
low complexity region	509	538	N/A	INTRINSIC
low complexity region	558	579	N/A	INTRINSIC
Pfam:SRP40_C	627	699	1.1e-32	PFAM

Predicted Effect

unknown
Transcript: ENSMUST00000223728
AA Change: K400R

Predicted Effect

probably benign
Transcript: ENSMUST00000223741

Predicted Effect

probably benign
Transcript: ENSMUST00000224490

Predicted Effect

unknown
Transcript: ENSMUST00000225780
AA Change: K401R

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (70/70)

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcd2	T	A	15: 91,075,379 (GRCm39)	I145F	probably benign	Het
Acvr2b	T	A	9: 119,262,352 (GRCm39)	V455E	probably benign	Het
Adgrv1	A	T	13: 81,588,344 (GRCm39)	V4414E	possibly damaging	Het
Agap2	T	C	10: 126,926,834 (GRCm39)	V977A	probably damaging	Het
Aph1b	A	C	9: 66,701,401 (GRCm39)	S79A	probably damaging	Het
Atm	G	A	9: 53,423,191 (GRCm39)	S645L	probably benign	Het
Cdh11	T	C	8: 103,400,456 (GRCm39)	R171G	probably benign	Het
Ces2f	T	A	8: 105,681,330 (GRCm39)	D556E	probably benign	Het
Cfap210	A	C	2: 69,588,792 (GRCm39)	N439K	probably benign	Het
Cyp26b1	C	A	6: 84,553,964 (GRCm39)	V218L	possibly damaging	Het
Diaph1	T	C	18: 38,028,353 (GRCm39)		probably null	Het
Dock1	A	G	7: 134,367,003 (GRCm39)	I482V	probably benign	Het
Dok4	A	T	8: 95,594,053 (GRCm39)	D47E	possibly damaging	Het
Dqx1	T	A	6: 83,036,028 (GRCm39)	L120Q	probably damaging	Het
Duxf3	A	T	10: 58,066,558 (GRCm39)	V157E	probably damaging	Het
Efcab3	T	C	11: 104,653,516 (GRCm39)		probably null	Het
Eif2a	C	A	3: 58,456,102 (GRCm39)	P367Q	probably damaging	Het
Elp2	C	T	18: 24,744,985 (GRCm39)	R102C	probably damaging	Het
Erich2	T	C	2: 70,364,666 (GRCm39)	S347P	probably damaging	Het
Fgfr3	GGACCTCTCCGTG	GG	5: 33,892,766 (GRCm39)		probably null	Het
Flacc1	T	A	1: 58,717,467 (GRCm39)	D148V	probably damaging	Het
Gadl1	A	T	9: 115,903,155 (GRCm39)	I495L	probably benign	Het
Gcnt4	A	G	13: 97,083,468 (GRCm39)	T255A	possibly damaging	Het
Gm10972	A	G	3: 94,550,887 (GRCm39)	K21E	unknown	Het
Gm57859	T	A	11: 113,583,223 (GRCm39)	W517R	probably damaging	Het
Gm7361	C	A	5: 26,466,188 (GRCm39)	H183Q	probably benign	Het
Gp2	C	T	7: 119,053,829 (GRCm39)	C44Y	probably damaging	Het
Hcar2	C	T	5: 124,003,249 (GRCm39)	V85I	probably benign	Het
Hira	T	C	16: 18,770,829 (GRCm39)	V822A	probably damaging	Het
Ighv1-5	T	A	12: 114,477,156 (GRCm39)	T49S	probably damaging	Het
Ints1	C	T	5: 139,754,731 (GRCm39)	V603M	probably damaging	Het
Kdm2a	A	C	19: 4,374,404 (GRCm39)	L909R	probably damaging	Het
Klkb1	T	A	8: 45,747,827 (GRCm39)		probably benign	Het
Krit1	A	G	5: 3,862,349 (GRCm39)	H168R	possibly damaging	Het
Map3k21	A	T	8: 126,654,340 (GRCm39)	E386D	probably damaging	Het
Muc16	C	T	9: 18,556,385 (GRCm39)	E3303K	unknown	Het
Muc5b	T	G	7: 141,415,250 (GRCm39)	V2732G	possibly damaging	Het
Myo5a	T	C	9: 75,104,983 (GRCm39)	L189P		Het
Nlrc5	T	C	8: 95,248,598 (GRCm39)	L1740S	probably damaging	Het
Or4b1b	T	A	2: 90,112,098 (GRCm39)	T274S	possibly damaging	Het
Or4k15	T	A	14: 50,364,952 (GRCm39)	L306Q	probably benign	Het
Or52s19	T	C	7: 103,008,219 (GRCm39)	M61V	probably damaging	Het
Or8u8	T	C	2: 86,012,417 (GRCm39)	I13V	probably benign	Het
Pnma8b	A	G	7: 16,678,874 (GRCm39)		probably benign	Het
Pnpt1	A	T	11: 29,080,860 (GRCm39)	M35L	probably benign	Het
Postn	A	G	3: 54,270,091 (GRCm39)	K57E	probably damaging	Het
Ppp1r9a	A	C	6: 4,905,775 (GRCm39)	D110A	probably damaging	Het
Pptc7	G	A	5: 122,422,942 (GRCm39)	V71M	possibly damaging	Het
Prdm11	T	A	2: 92,843,052 (GRCm39)	I136F	possibly damaging	Het
Rfc1	A	G	5: 65,436,841 (GRCm39)	L613P	probably damaging	Het
Ryr3	T	C	2: 112,560,818 (GRCm39)	D2981G	probably benign	Het
Sbf2	C	A	7: 110,213,923 (GRCm39)	E16*	probably null	Het
Scara3	T	C	14: 66,168,651 (GRCm39)	E322G	probably damaging	Het
Sema5b	T	A	16: 35,481,700 (GRCm39)	C893S	probably damaging	Het
Setdb1	T	C	3: 95,249,139 (GRCm39)	D323G	probably damaging	Het
Slc19a3	T	C	1: 82,991,649 (GRCm39)	Y453C	probably damaging	Het
Snx5	T	C	2: 144,099,894 (GRCm39)	K137E	probably damaging	Het
Taar8c	G	A	10: 23,977,116 (GRCm39)	T232I	probably benign	Het
Taok2	G	A	7: 126,474,050 (GRCm39)	T352I	probably damaging	Het
Ttc3	C	A	16: 94,219,541 (GRCm39)	R489S	possibly damaging	Het
Usp12	A	T	5: 146,689,264 (GRCm39)		probably null	Het
Usp16	T	A	16: 87,263,174 (GRCm39)	C125*	probably null	Het
Vmn2r106	C	T	17: 20,488,201 (GRCm39)	E733K	probably damaging	Het
Vps13b	T	A	15: 35,876,843 (GRCm39)	I2832K	probably benign	Het
Vps13c	A	G	9: 67,747,761 (GRCm39)	Y18C	probably damaging	Het
Zfp160	T	A	17: 21,246,455 (GRCm39)	I335K	probably benign	Het
Zfp788	A	T	7: 41,298,275 (GRCm39)	I304F	possibly damaging	Het

Other mutations in Nolc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02679:Nolc1	APN	19	46,071,468 (GRCm39)	unclassified	probably benign
FR4976:Nolc1	UTSW	19	46,069,814 (GRCm39)	small insertion	probably benign
FR4976:Nolc1	UTSW	19	46,069,795 (GRCm39)	small insertion	probably benign
R0106:Nolc1	UTSW	19	46,068,528 (GRCm39)	splice site	probably benign
R0121:Nolc1	UTSW	19	46,069,817 (GRCm39)	unclassified	probably benign
R0140:Nolc1	UTSW	19	46,069,817 (GRCm39)	unclassified	probably benign
R0501:Nolc1	UTSW	19	46,067,359 (GRCm39)	missense	probably damaging	1.00
R0513:Nolc1	UTSW	19	46,072,598 (GRCm39)	missense	probably damaging	1.00
R0676:Nolc1	UTSW	19	46,068,528 (GRCm39)	splice site	probably benign
R1553:Nolc1	UTSW	19	46,069,814 (GRCm39)	small insertion	probably benign
R1642:Nolc1	UTSW	19	46,067,461 (GRCm39)	critical splice donor site	probably null
R1698:Nolc1	UTSW	19	46,069,870 (GRCm39)	splice site	probably null
R2067:Nolc1	UTSW	19	46,072,046 (GRCm39)	missense	probably damaging	1.00
R2113:Nolc1	UTSW	19	46,069,800 (GRCm39)	small insertion	probably benign
R2113:Nolc1	UTSW	19	46,069,798 (GRCm39)	small insertion	probably benign
R2300:Nolc1	UTSW	19	46,069,807 (GRCm39)	small insertion	probably benign
R2300:Nolc1	UTSW	19	46,069,798 (GRCm39)	small insertion	probably benign
R2895:Nolc1	UTSW	19	46,069,791 (GRCm39)	small insertion	probably benign
R2999:Nolc1	UTSW	19	46,071,594 (GRCm39)	small deletion	probably benign
R3737:Nolc1	UTSW	19	46,069,816 (GRCm39)	small insertion	probably benign
R3737:Nolc1	UTSW	19	46,069,792 (GRCm39)	small insertion	probably benign
R3737:Nolc1	UTSW	19	46,069,809 (GRCm39)	small insertion	probably benign
R3747:Nolc1	UTSW	19	46,069,795 (GRCm39)	small insertion	probably benign
R3806:Nolc1	UTSW	19	46,069,791 (GRCm39)	small insertion	probably benign
R3807:Nolc1	UTSW	19	46,069,791 (GRCm39)	small insertion	probably benign
R3807:Nolc1	UTSW	19	46,069,798 (GRCm39)	small insertion	probably benign
R3807:Nolc1	UTSW	19	46,069,810 (GRCm39)	small insertion	probably benign
R4035:Nolc1	UTSW	19	46,069,797 (GRCm39)	small insertion	probably benign
R4619:Nolc1	UTSW	19	46,071,959 (GRCm39)	missense	probably damaging	1.00
R4856:Nolc1	UTSW	19	46,071,594 (GRCm39)	small deletion	probably benign
R4999:Nolc1	UTSW	19	46,067,359 (GRCm39)	missense	probably damaging	1.00
R5103:Nolc1	UTSW	19	46,070,103 (GRCm39)	nonsense	probably null
R5559:Nolc1	UTSW	19	46,071,594 (GRCm39)	small deletion	probably benign
R5837:Nolc1	UTSW	19	46,071,622 (GRCm39)	unclassified	probably benign
R6457:Nolc1	UTSW	19	46,071,509 (GRCm39)	unclassified	probably benign
R7467:Nolc1	UTSW	19	46,070,773 (GRCm39)	missense	unknown
R8011:Nolc1	UTSW	19	46,070,023 (GRCm39)	missense	unknown
R8806:Nolc1	UTSW	19	46,071,471 (GRCm39)	missense	unknown
RF027:Nolc1	UTSW	19	46,069,802 (GRCm39)	small insertion	probably benign
RF031:Nolc1	UTSW	19	46,069,810 (GRCm39)	small insertion	probably benign
RF034:Nolc1	UTSW	19	46,069,810 (GRCm39)	small insertion	probably benign
RF040:Nolc1	UTSW	19	46,069,802 (GRCm39)	small insertion	probably benign
RF044:Nolc1	UTSW	19	46,069,810 (GRCm39)	small insertion	probably benign
X0050:Nolc1	UTSW	19	46,069,791 (GRCm39)	small deletion	probably benign
Y5377:Nolc1	UTSW	19	46,069,808 (GRCm39)	small insertion	probably benign
Y5379:Nolc1	UTSW	19	46,069,798 (GRCm39)	small insertion	probably benign
Z1088:Nolc1	UTSW	19	46,071,537 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- CCAAAGCAGCTCCAGTGAAG -3'
(R):5'- GCTTTAGCAGTCACCTTGGC -3'

Sequencing Primer
(F):5'- TCTTCAGACAGCTCGGGTAAC -3'
(R):5'- TAGCAGTCACCTTGGCCTTGG -3'

Posted On

2019-10-17