Mutagenetix > Incidental Mutation

Incidental Mutation 'R7472:Themis'

581307

Institutional Source

Beutler Lab

Gene Symbol

Themis

Ensembl Gene

ENSMUSG00000049109

Gene Name

thymocyte selection associated

Synonyms

Tsepa, Gasp, E430004N04Rik

MMRRC Submission

045546-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.173) question?

Stock #

R7472 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

28544356-28759814 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 28637415 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 173 (E173G)

Ref Sequence

ENSEMBL: ENSMUSP00000060129 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000056097] [ENSMUST00000060409] [ENSMUST00000105516] [ENSMUST00000159927] [ENSMUST00000161345]

AlphaFold

Q8BGW0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000056097
AA Change: E173G

PolyPhen 2 Score 0.692 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000060129
Gene: ENSMUSG00000049109
AA Change: E173G

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	266	5.2e-59	PFAM
Pfam:CABIT	282	530	3.7e-48	PFAM
low complexity region	550	564	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000060409
AA Change: E173G

PolyPhen 2 Score 0.897 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000055315
Gene: ENSMUSG00000049109
AA Change: E173G

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	272	9.3e-52	PFAM
Pfam:CABIT	282	532	5e-62	PFAM
low complexity region	550	564	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000105516
AA Change: E173G

PolyPhen 2 Score 0.517 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000101155
Gene: ENSMUSG00000049109
AA Change: E173G

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	272	9e-52	PFAM
Pfam:CABIT	282	532	4.9e-62	PFAM
low complexity region	550	564	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000159927

SMART Domains

Protein: ENSMUSP00000123919
Gene: ENSMUSG00000049109

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	91	1.9e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000161345

SMART Domains

Protein: ENSMUSP00000123894
Gene: ENSMUSG00000049109

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	86	1.9e-9	PFAM
Pfam:CABIT	129	203	5.1e-18	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

99% (99/100)

MGI Phenotype

FUNCTION: This gene encodes a protein that plays a regulatory role in both positive and negative T-cell selection during late thymocyte development. The protein functions through T-cell antigen receptor signaling, and is necessary for proper lineage commitment and maturation of T-cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2015]
PHENOTYPE: Homozygous null mice have defects in T cell positive selection that leads to very few alpha-beta T cells being found in the periphery. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 99 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921504E06Rik	A	G	2: 19,545,219 (GRCm39)	I78T	probably benign	Het
4921524J17Rik	G	A	8: 86,159,438 (GRCm39)		probably benign	Het
4932438H23Rik	T	C	16: 90,852,744 (GRCm39)	T131A	probably benign	Het
Acbd6	G	T	1: 155,463,213 (GRCm39)	E138*	probably null	Het
Ago3	A	G	4: 126,239,310 (GRCm39)	V847A	probably damaging	Het
Akap13	G	A	7: 75,380,213 (GRCm39)	R462H	probably damaging	Het
Als2cl	C	A	9: 110,727,174 (GRCm39)	H913Q	probably benign	Het
Atf6	A	C	1: 170,643,060 (GRCm39)	S360R	possibly damaging	Het
Atm	G	C	9: 53,359,425 (GRCm39)	N2789K	possibly damaging	Het
Bhlhe40	TG	TGG	6: 108,641,818 (GRCm39)	254	probably null	Het
Bpifa6	A	T	2: 153,831,249 (GRCm39)	I272F	possibly damaging	Het
Cabin1	G	T	10: 75,494,481 (GRCm39)	P1633T	probably damaging	Het
Camsap2	A	G	1: 136,209,131 (GRCm39)	V119A	probably damaging	Het
Ccdc40	A	G	11: 119,153,974 (GRCm39)	E1082G	probably benign	Het
Cchcr1	C	A	17: 35,839,248 (GRCm39)	A479D	probably damaging	Het
Chpt1	C	T	10: 88,312,230 (GRCm39)	V349I	probably benign	Het
Cldn13	A	T	5: 134,943,975 (GRCm39)	I70K	probably damaging	Het
Col6a6	T	A	9: 105,659,622 (GRCm39)	D441V	probably damaging	Het
Cpne5	G	T	17: 29,423,714 (GRCm39)	T138K	probably benign	Het
Creb3l3	A	T	10: 80,925,301 (GRCm39)		probably null	Het
Cst5	C	T	2: 149,247,496 (GRCm39)	L71F	probably benign	Het
Ctsb	T	C	14: 63,375,550 (GRCm39)	V172A	probably benign	Het
Cyp19a1	A	G	9: 54,074,277 (GRCm39)	Y426H	possibly damaging	Het
Cyth4	T	C	15: 78,490,094 (GRCm39)	F72S	probably damaging	Het
D430041D05Rik	G	T	2: 104,240,484 (GRCm39)	Q9K	unknown	Het
Dnah1	T	A	14: 30,983,547 (GRCm39)	I4099F	probably damaging	Het
Dnah1	T	A	14: 31,022,748 (GRCm39)	I1130F	possibly damaging	Het
Dnah12	A	G	14: 26,578,592 (GRCm39)	K3117R	probably benign	Het
Dpf3	A	T	12: 83,319,159 (GRCm39)	S275R	probably benign	Het
Dst	A	G	1: 34,257,578 (GRCm39)	N2450S	probably benign	Het
Dync1h1	C	T	12: 110,632,109 (GRCm39)	R4460W	probably damaging	Het
Ecm1	A	C	3: 95,642,632 (GRCm39)	C414G	possibly damaging	Het
Eef2	G	A	10: 81,015,384 (GRCm39)	D302N	probably benign	Het
Egf	T	C	3: 129,479,912 (GRCm39)	D1038G	possibly damaging	Het
Epm2aip1	T	C	9: 111,101,467 (GRCm39)	S147P	probably damaging	Het
Esam	C	A	9: 37,448,863 (GRCm39)	P324T	possibly damaging	Het
Fbxo36	A	G	1: 84,874,301 (GRCm39)	D99G	probably damaging	Het
Fhad1	G	A	4: 141,691,937 (GRCm39)	R400C	probably benign	Het
Fhip2a	A	G	19: 57,357,017 (GRCm39)	Y36C	probably damaging	Het
Fndc3b	T	C	3: 27,515,893 (GRCm39)	T638A	probably benign	Het
Gba2	T	C	4: 43,568,967 (GRCm39)	T563A	probably benign	Het
Gm8180	T	A	14: 44,021,094 (GRCm39)	N38I	possibly damaging	Het
Hs3st4	A	G	7: 123,996,249 (GRCm39)	E305G	probably damaging	Het
Ireb2	T	A	9: 54,791,338 (GRCm39)	F191I	probably benign	Het
Irx3	T	G	8: 92,526,625 (GRCm39)	T360P	probably benign	Het
Itpr1	T	A	6: 108,380,357 (GRCm39)	I1375N	probably benign	Het
Klrh1	A	T	6: 129,752,345 (GRCm39)	F57I	probably benign	Het
Lama4	A	T	10: 38,963,369 (GRCm39)	I1314F	possibly damaging	Het
Lamb2	C	A	9: 108,363,347 (GRCm39)	A842D	probably benign	Het
Ldlrap1	A	G	4: 134,486,307 (GRCm39)	Y51H	possibly damaging	Het
Leo1	A	G	9: 75,355,623 (GRCm39)	D321G	probably damaging	Het
Lrrc14b	A	G	13: 74,511,226 (GRCm39)	S285P	probably damaging	Het
Macf1	A	G	4: 123,326,860 (GRCm39)	V4881A	probably benign	Het
Mfsd2b	A	T	12: 4,916,481 (GRCm39)	F333I	probably damaging	Het
Micall1	T	C	15: 79,006,760 (GRCm39)	S196P	unknown	Het
Mrps21	T	C	3: 95,770,110 (GRCm39)	N73S	probably benign	Het
Msantd5f5	G	A	4: 73,542,736 (GRCm39)	G79S	probably damaging	Het
Msln	C	T	17: 25,969,708 (GRCm39)	V341M	possibly damaging	Het
Mybpc3	A	T	2: 90,962,001 (GRCm39)	M840L	probably damaging	Het
Myo7a	A	C	7: 97,714,000 (GRCm39)	F1613V	probably damaging	Het
Naprt	C	T	15: 75,763,607 (GRCm39)		probably null	Het
Nbr1	T	C	11: 101,462,765 (GRCm39)	V572A	probably damaging	Het
Nfkbie	A	T	17: 45,870,233 (GRCm39)	T193S	probably damaging	Het
Nlrp14	T	G	7: 106,789,251 (GRCm39)	N672K	probably benign	Het
Or11l3	A	T	11: 58,516,260 (GRCm39)	I204N	probably damaging	Het
Or4b1d	A	G	2: 89,968,668 (GRCm39)	Y272H	probably damaging	Het
Or52ab2	A	G	7: 102,969,656 (GRCm39)	T13A		Het
Or5b101	T	C	19: 13,005,439 (GRCm39)	T85A	probably benign	Het
Or6k14	A	T	1: 173,927,299 (GRCm39)	I92F	probably damaging	Het
Or8b49	A	T	9: 38,506,200 (GRCm39)	I228L	probably benign	Het
Oscar	T	C	7: 3,614,149 (GRCm39)	T197A	possibly damaging	Het
P3h3	C	A	6: 124,827,594 (GRCm39)	A481S	possibly damaging	Het
Pcdh8	T	C	14: 80,008,691 (GRCm39)		probably null	Het
Pcsk9	A	T	4: 106,316,094 (GRCm39)	H116Q	probably benign	Het
Ptcd1	A	G	5: 145,091,540 (GRCm39)	F520L	possibly damaging	Het
Rapgef2	T	C	3: 78,976,580 (GRCm39)	T1261A	probably benign	Het
Ribc2	T	A	15: 85,019,446 (GRCm39)	M76K	probably benign	Het
Sin3b	A	G	8: 73,479,853 (GRCm39)	E853G	probably damaging	Het
Slit2	A	G	5: 48,414,180 (GRCm39)	D940G	probably damaging	Het
Smarcb1	T	A	10: 75,733,373 (GRCm39)	N342Y	probably damaging	Het
Smurf2	A	T	11: 106,726,921 (GRCm39)	I469N	probably damaging	Het
Spata31h1	T	C	10: 82,119,421 (GRCm39)	I4530V	probably benign	Het
Spta1	T	C	1: 174,074,065 (GRCm39)	Y2335H	probably damaging	Het
Suz12	C	T	11: 79,915,801 (GRCm39)	R425C	probably benign	Het
Synpo	G	A	18: 60,762,895 (GRCm39)	A4V	probably benign	Het
Tet1	A	C	10: 62,649,129 (GRCm39)	S157A	possibly damaging	Het
Timmdc1	A	T	16: 38,325,780 (GRCm39)	L197*	probably null	Het
Tmem63c	T	C	12: 87,115,932 (GRCm39)	F191S	possibly damaging	Het
Tnn	G	A	1: 159,937,917 (GRCm39)	T1200I	probably benign	Het
Traf6	A	G	2: 101,527,537 (GRCm39)	H429R	probably benign	Het
Trem3	T	C	17: 48,556,873 (GRCm39)	S115P	probably benign	Het
Trip11	A	T	12: 101,851,639 (GRCm39)	N808K	probably benign	Het
Trub2	A	T	2: 29,673,385 (GRCm39)	V106E	probably damaging	Het
Ugcg	A	G	4: 59,217,156 (GRCm39)	I227V	probably benign	Het
Vat1l	G	A	8: 114,963,539 (GRCm39)		probably null	Het
Vmn1r184	T	C	7: 25,966,824 (GRCm39)	M190T	possibly damaging	Het
Vmn2r3	T	C	3: 64,182,953 (GRCm39)	T249A	probably benign	Het
Zfp729b	A	C	13: 67,742,002 (GRCm39)	S88A	probably benign	Het
Zfp995	T	C	17: 22,099,181 (GRCm39)	Y351C	probably damaging	Het

Other mutations in Themis

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01609:Themis	APN	10	28,544,749 (GRCm39)	splice site	probably benign
IGL01729:Themis	APN	10	28,637,587 (GRCm39)	nonsense	probably null
IGL01833:Themis	APN	10	28,658,307 (GRCm39)	nonsense	probably null
IGL02582:Themis	APN	10	28,637,543 (GRCm39)	missense	probably benign	0.00
IGL02835:Themis	APN	10	28,637,616 (GRCm39)	intron	probably benign
cloudies	UTSW	10	28,637,195 (GRCm39)	nonsense	probably null
currant	UTSW	10	28,658,007 (GRCm39)	missense	probably damaging	1.00
death_valley	UTSW	10	28,544,723 (GRCm39)	missense	probably damaging	1.00
Meteor	UTSW	10	28,657,828 (GRCm39)	missense	possibly damaging	0.90
six_flags	UTSW	10	28,657,903 (GRCm39)	missense	probably damaging	1.00
R0445:Themis	UTSW	10	28,658,007 (GRCm39)	missense	probably damaging	1.00
R0507:Themis	UTSW	10	28,657,828 (GRCm39)	missense	possibly damaging	0.90
R0709:Themis	UTSW	10	28,637,570 (GRCm39)	missense	probably benign	0.00
R1170:Themis	UTSW	10	28,544,744 (GRCm39)	missense	possibly damaging	0.80
R1442:Themis	UTSW	10	28,658,131 (GRCm39)	missense	probably damaging	0.96
R1844:Themis	UTSW	10	28,657,753 (GRCm39)	missense	probably damaging	1.00
R2004:Themis	UTSW	10	28,658,720 (GRCm39)	missense	probably benign	0.28
R2150:Themis	UTSW	10	28,544,723 (GRCm39)	missense	probably damaging	1.00
R2358:Themis	UTSW	10	28,739,376 (GRCm39)	missense	possibly damaging	0.57
R4529:Themis	UTSW	10	28,658,331 (GRCm39)	missense	possibly damaging	0.92
R4693:Themis	UTSW	10	28,658,647 (GRCm39)	missense	probably damaging	1.00
R4717:Themis	UTSW	10	28,665,748 (GRCm39)	missense	probably benign
R4801:Themis	UTSW	10	28,637,507 (GRCm39)	missense	probably benign	0.21
R4802:Themis	UTSW	10	28,637,507 (GRCm39)	missense	probably benign	0.21
R5249:Themis	UTSW	10	28,637,195 (GRCm39)	nonsense	probably null
R5557:Themis	UTSW	10	28,657,882 (GRCm39)	missense	possibly damaging	0.90
R5569:Themis	UTSW	10	28,657,887 (GRCm39)	missense	possibly damaging	0.95
R5640:Themis	UTSW	10	28,739,372 (GRCm39)	missense	probably damaging	0.99
R5735:Themis	UTSW	10	28,598,530 (GRCm39)	missense	probably benign	0.09
R6467:Themis	UTSW	10	28,657,762 (GRCm39)	missense	possibly damaging	0.47
R6523:Themis	UTSW	10	28,657,894 (GRCm39)	missense	possibly damaging	0.65
R6727:Themis	UTSW	10	28,657,903 (GRCm39)	missense	probably damaging	1.00
R7014:Themis	UTSW	10	28,665,703 (GRCm39)	missense	probably benign
R7101:Themis	UTSW	10	28,637,422 (GRCm39)	nonsense	probably null
R7185:Themis	UTSW	10	28,657,873 (GRCm39)	missense	probably benign	0.00
R7323:Themis	UTSW	10	28,609,497 (GRCm39)	missense	probably benign
R7386:Themis	UTSW	10	28,665,743 (GRCm39)	missense	probably benign	0.00
R7555:Themis	UTSW	10	28,657,698 (GRCm39)	missense	possibly damaging	0.67
R7715:Themis	UTSW	10	28,739,305 (GRCm39)	missense	probably benign	0.02
R7825:Themis	UTSW	10	28,658,470 (GRCm39)	missense	probably benign	0.11
R7992:Themis	UTSW	10	28,637,342 (GRCm39)	missense	probably benign	0.02
R8112:Themis	UTSW	10	28,673,502 (GRCm39)	makesense	probably null
R8850:Themis	UTSW	10	28,673,492 (GRCm39)	missense	possibly damaging	0.83
R8954:Themis	UTSW	10	28,665,709 (GRCm39)	missense	probably benign	0.00
R9038:Themis	UTSW	10	28,657,749 (GRCm39)	missense	probably damaging	0.99
R9081:Themis	UTSW	10	28,544,582 (GRCm39)	unclassified	probably benign
R9168:Themis	UTSW	10	28,658,233 (GRCm39)	missense	probably benign	0.01
R9169:Themis	UTSW	10	28,658,233 (GRCm39)	missense	probably benign	0.01
R9170:Themis	UTSW	10	28,658,233 (GRCm39)	missense	probably benign	0.01
R9171:Themis	UTSW	10	28,658,233 (GRCm39)	missense	probably benign	0.01
R9269:Themis	UTSW	10	28,739,390 (GRCm39)	missense	probably benign	0.10
R9404:Themis	UTSW	10	28,665,743 (GRCm39)	missense	probably benign	0.00
R9518:Themis	UTSW	10	28,544,748 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- AGCAGACTAGGTCATCCTTGC -3'
(R):5'- TCCTCAGTGGATACTTACATTTCAGC -3'

Sequencing Primer
(F):5'- ATCCTTGCTTTTATCACCTGAAGG -3'
(R):5'- GTGGATACTTACATTTCAGCACACC -3'

Posted On

2019-10-17