Mutagenetix > Incidental Mutation

Incidental Mutation 'R7514:Tap1'

582361

Institutional Source

Beutler Lab

Gene Symbol

Tap1

Ensembl Gene

ENSMUSG00000037321

Gene Name

transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)

Synonyms

TAP, Ham1, RING4, MTP1, Tap-1, Ham-1, Abcb2, PSF-1

MMRRC Submission

045587-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7514 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

34406530-34416199 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 34415639 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 689 (L689P)

Ref Sequence

ENSEMBL: ENSMUSP00000128401 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025196] [ENSMUST00000041633] [ENSMUST00000170086] [ENSMUST00000173441]

AlphaFold

P21958

Predicted Effect

probably benign
Transcript: ENSMUST00000025196

SMART Domains

Protein: ENSMUSP00000025196
Gene: ENSMUSG00000024338

Domain	Start	End	E-Value	Type
Pfam:Proteasome	69	251	1.9e-49	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000041633
AA Change: L661P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000039264
Gene: ENSMUSG00000037321
AA Change: L661P

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
transmembrane domain	37	59	N/A	INTRINSIC
transmembrane domain	66	88	N/A	INTRINSIC
transmembrane domain	116	138	N/A	INTRINSIC
Pfam:ABC_membrane	163	420	9.1e-55	PFAM
AAA	478	666	2.21e-18	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000170086
AA Change: L689P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000128401
Gene: ENSMUSG00000037321
AA Change: L689P

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
transmembrane domain	37	59	N/A	INTRINSIC
transmembrane domain	66	88	N/A	INTRINSIC
transmembrane domain	116	138	N/A	INTRINSIC
Pfam:ABC_membrane	163	434	5.8e-70	PFAM
AAA	506	694	2.21e-18	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000171148

SMART Domains

Protein: ENSMUSP00000130189
Gene: ENSMUSG00000037321

Domain	Start	End	E-Value	Type
Pfam:ABC_membrane	1	114	1.5e-24	PFAM
Pfam:ABC_tran	167	196	1e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000173441

SMART Domains

Protein: ENSMUSP00000134664
Gene: ENSMUSG00000024338

Domain	Start	End	E-Value	Type
Pfam:Proteasome	69	248	6.3e-53	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

MGI Phenotype

FUNCTION: The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance. This protein forms a heterodimer with Tap2 that transports short peptides from the cytosol into the endoplasmic reticulum lumen. Mutations in the human gene may be associated with ankylosing spondylitis, insulin-dependent diabetes mellitus, and celiac disease. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2009]
PHENOTYPE: Mice homozygous for targeted mutations that inactivate the gene are deficient in antigen presentation, surface class I antigens, and CD4-8+ T cells. [provided by MGI curators]

Allele List at MGI

All alleles(2) : Targeted, knock-out(2)

Other mutations in this stock

Total: 103 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933427D14Rik	A	G	11: 72,086,628 (GRCm39)	L261P	probably damaging	Het
A4gnt	A	G	9: 99,502,598 (GRCm39)	I253V	probably benign	Het
AAdacl4fm3	A	T	4: 144,429,798 (GRCm39)	V397D	possibly damaging	Het
Acap2	A	T	16: 30,973,385 (GRCm39)		probably null	Het
Adora2b	G	T	11: 62,156,146 (GRCm39)	M198I	probably damaging	Het
Akap5	C	A	12: 76,375,303 (GRCm39)	T245K	probably benign	Het
Aldh1a2	T	C	9: 71,192,245 (GRCm39)	I399T	probably damaging	Het
Ank2	G	A	3: 126,819,252 (GRCm39)	S473L	probably benign	Het
Anln	A	T	9: 22,272,153 (GRCm39)	D655E	probably damaging	Het
Arhgef10	T	C	8: 15,025,956 (GRCm39)	V820A	probably benign	Het
Arid1b	A	G	17: 5,391,989 (GRCm39)	K1787E	probably benign	Het
Art4	T	C	6: 136,831,739 (GRCm39)	H134R	probably benign	Het
Borcs6	G	A	11: 68,951,410 (GRCm39)	V263M	probably damaging	Het
C8a	A	T	4: 104,703,247 (GRCm39)	M314K	possibly damaging	Het
Cbfa2t3	T	G	8: 123,361,865 (GRCm39)	M386L	probably damaging	Het
Ccdc170	T	A	10: 4,496,839 (GRCm39)	V459E	probably benign	Het
Cdh4	T	A	2: 179,532,636 (GRCm39)	N699K	possibly damaging	Het
Cdk12	T	C	11: 98,113,484 (GRCm39)	L756P	unknown	Het
Chsy1	A	G	7: 65,821,868 (GRCm39)	D701G	probably damaging	Het
Cnot9	A	G	1: 74,567,921 (GRCm39)	T270A	probably benign	Het
Crat	C	T	2: 30,294,577 (GRCm39)	R497Q	probably benign	Het
Csnk2a1-ps3	A	G	1: 156,352,324 (GRCm39)	D175G	probably benign	Het
Cyb5r1	A	G	1: 134,338,268 (GRCm39)	E228G	probably damaging	Het
D630003M21Rik	A	G	2: 158,059,273 (GRCm39)	L209P	probably damaging	Het
Dennd2c	T	A	3: 103,070,378 (GRCm39)	D791E	probably benign	Het
Dnah14	T	C	1: 181,455,632 (GRCm39)	I919T	probably damaging	Het
Dpp8	T	C	9: 64,986,036 (GRCm39)	L842S	probably damaging	Het
Ern1	A	G	11: 106,300,719 (GRCm39)		probably null	Het
Exo1	T	C	1: 175,734,232 (GRCm39)		probably null	Het
Fam161b	T	G	12: 84,404,512 (GRCm39)	E56A	possibly damaging	Het
Fbrsl1	T	C	5: 110,580,799 (GRCm39)	T153A	probably benign	Het
Fcgr3	T	G	1: 170,886,912 (GRCm39)	D4A	probably benign	Het
Gltp	C	T	5: 114,808,521 (GRCm39)	A193T	probably benign	Het
Gm3159	A	T	14: 4,399,690 (GRCm38)	S142C	probably damaging	Het
Gphn	T	C	12: 78,672,939 (GRCm39)	V485A	probably damaging	Het
Grik2	A	T	10: 49,399,904 (GRCm39)	N275K	probably damaging	Het
Gstt3	G	T	10: 75,612,625 (GRCm39)	Q102K	probably damaging	Het
Hivep3	T	A	4: 119,954,052 (GRCm39)	F789L	possibly damaging	Het
Ing5	A	G	1: 93,744,164 (GRCm39)	N157D	possibly damaging	Het
Itga3	C	T	11: 94,956,722 (GRCm39)	W177*	probably null	Het
Jag2	T	C	12: 112,892,672 (GRCm39)	T83A	probably benign	Het
Krt90	G	A	15: 101,461,605 (GRCm39)	T532I	unknown	Het
Lcn2	A	G	2: 32,277,861 (GRCm39)		probably null	Het
Lrig2	A	G	3: 104,373,076 (GRCm39)	S602P	probably damaging	Het
Lsm1	A	C	8: 26,282,237 (GRCm39)	R33S	probably damaging	Het
Mast4	A	T	13: 102,923,934 (GRCm39)	Y492*	probably null	Het
Mcm3	A	T	1: 20,876,120 (GRCm39)	L658Q	probably benign	Het
Myh4	G	A	11: 67,134,148 (GRCm39)		probably null	Het
Nck2	T	C	1: 43,608,381 (GRCm39)	V341A	probably benign	Het
Nucb1	T	C	7: 45,151,142 (GRCm39)		probably null	Het
Nup210l	G	C	3: 90,117,766 (GRCm39)		probably null	Het
Or1j1	A	G	2: 36,702,651 (GRCm39)	I151T	probably benign	Het
Or5al5	A	T	2: 85,961,972 (GRCm39)	F12I	probably damaging	Het
Or7g22	A	T	9: 19,049,161 (GRCm39)	S291C	possibly damaging	Het
Or8b48	T	A	9: 38,493,347 (GRCm39)	M258K	probably damaging	Het
Or8b54	G	A	9: 38,686,974 (GRCm39)	C141Y	probably damaging	Het
Pla2g4a	G	A	1: 149,727,113 (GRCm39)	P556S	probably damaging	Het
Plat	T	C	8: 23,265,658 (GRCm39)	C234R	probably damaging	Het
Ppfia1	T	C	7: 144,071,450 (GRCm39)	I321V	probably benign	Het
Prrc1	T	A	18: 57,496,325 (GRCm39)	V92E	probably benign	Het
Prss3	A	G	6: 41,350,848 (GRCm39)	V214A	probably damaging	Het
Ptprg	G	T	14: 12,179,342 (GRCm38)	K786N	possibly damaging	Het
Rabgap1	G	T	2: 37,427,354 (GRCm39)	G645V	probably damaging	Het
Rfx4	T	C	10: 84,716,090 (GRCm39)	S470P	probably damaging	Het
Rin3	C	T	12: 102,335,909 (GRCm39)	Q607*	probably null	Het
Sema3a	A	G	5: 13,573,093 (GRCm39)	H207R	probably benign	Het
Serpinb12	G	A	1: 106,878,534 (GRCm39)	E181K	probably damaging	Het
Serpinb6c	G	A	13: 34,081,386 (GRCm39)	Q88*	probably null	Het
Shmt1	A	C	11: 60,692,812 (GRCm39)	C90W	probably damaging	Het
Slc16a13	C	T	11: 70,109,710 (GRCm39)	V264M	probably damaging	Het
Slc17a8	G	T	10: 89,427,969 (GRCm39)	P286Q	probably damaging	Het
Slc27a6	C	T	18: 58,745,293 (GRCm39)	Q576*	probably null	Het
Slc30a9	T	C	5: 67,505,421 (GRCm39)	S470P	possibly damaging	Het
Slc44a2	G	T	9: 21,253,768 (GRCm39)	K136N	possibly damaging	Het
Smarca5	A	T	8: 81,444,163 (GRCm39)	H534Q	probably damaging	Het
Son	T	G	16: 91,451,748 (GRCm39)	L165R	probably damaging	Het
Sox10	G	A	15: 79,040,421 (GRCm39)	P373L	probably benign	Het
Sp100	C	T	1: 85,608,860 (GRCm39)	R330*	probably null	Het
Srrm4	A	G	5: 116,584,570 (GRCm39)	L500P	probably damaging	Het
Tfg	A	G	16: 56,525,972 (GRCm39)		probably null	Het
Tjp2	C	T	19: 24,088,886 (GRCm39)	V677I	probably benign	Het
Tmprss11g	T	G	5: 86,645,176 (GRCm39)	D85A	probably damaging	Het
Tnfsf9	T	C	17: 57,414,238 (GRCm39)	S222P	probably damaging	Het
Trank1	A	G	9: 111,193,824 (GRCm39)	N616S	probably damaging	Het
Tubgcp6	C	A	15: 89,004,728 (GRCm39)	W297L	probably damaging	Het
Twist1	T	C	12: 34,008,355 (GRCm39)	S127P	probably damaging	Het
Ubr4	T	C	4: 139,179,966 (GRCm39)	I247T	unknown	Het
Ubr5	G	A	15: 37,988,481 (GRCm39)	T2153M		Het
Utrn	A	G	10: 12,573,833 (GRCm39)	V1079A	probably benign	Het
Vcan	T	C	13: 89,852,237 (GRCm39)	T908A	probably damaging	Het
Vmn2r104	A	G	17: 20,249,791 (GRCm39)	F827L	probably damaging	Het
Vmn2r111	T	A	17: 22,767,380 (GRCm39)	T706S	probably benign	Het
Vmn2r114	T	C	17: 23,527,035 (GRCm39)	D499G	probably null	Het
Vmn2r92	T	C	17: 18,391,533 (GRCm39)	S512P	probably damaging	Het
Vps4b	A	T	1: 106,708,232 (GRCm39)		probably null	Het
Vwa8	A	C	14: 79,219,674 (GRCm39)		probably null	Het
Wnt10b	T	C	15: 98,672,045 (GRCm39)	Q224R	probably benign	Het
Ylpm1	C	T	12: 85,077,268 (GRCm39)	P1331L	possibly damaging	Het
Zfhx4	G	A	3: 5,307,267 (GRCm39)	M164I	possibly damaging	Het
Zfp51	A	G	17: 21,683,762 (GRCm39)	T126A	probably benign	Het
Zfp609	A	G	9: 65,613,418 (GRCm39)	V339A	probably benign	Het
Zfp687	C	T	3: 94,914,841 (GRCm39)	R1220H	probably damaging	Het
Zfyve21	C	T	12: 111,790,249 (GRCm39)	L84F	probably damaging	Het

Other mutations in Tap1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
rose	APN	17	34,413,914 (GRCm39)	missense	probably damaging	1.00
IGL01294:Tap1	APN	17	34,413,019 (GRCm39)	critical splice donor site	probably null
IGL01776:Tap1	APN	17	34,412,102 (GRCm39)	missense	possibly damaging	0.82
IGL01787:Tap1	APN	17	34,415,578 (GRCm39)	missense	probably benign	0.21
IGL02246:Tap1	APN	17	34,412,963 (GRCm39)	missense	probably benign	0.01
IGL02996:Tap1	APN	17	34,410,370 (GRCm39)	missense	probably damaging	1.00
IGL03278:Tap1	APN	17	34,410,457 (GRCm39)	missense	probably damaging	1.00
bullus	UTSW	17	34,408,536 (GRCm39)	critical splice donor site	probably null
entertainer	UTSW	17	34,412,293 (GRCm39)	splice site	probably null
joplin	UTSW	17	34,412,232 (GRCm39)	missense	probably damaging	1.00
ragtime	UTSW	17	34,409,616 (GRCm39)	nonsense	probably null
rose2	UTSW	17	34,413,915 (GRCm39)	missense	probably damaging	1.00
Tapestry	UTSW	17	34,412,163 (GRCm39)	missense	probably damaging	1.00
PIT4802001:Tap1	UTSW	17	34,412,165 (GRCm39)	missense	probably damaging	1.00
R1566:Tap1	UTSW	17	34,408,520 (GRCm39)	missense	probably benign	0.00
R1795:Tap1	UTSW	17	34,413,899 (GRCm39)	missense	probably benign	0.21
R1837:Tap1	UTSW	17	34,407,083 (GRCm39)	missense	possibly damaging	0.50
R1839:Tap1	UTSW	17	34,407,083 (GRCm39)	missense	possibly damaging	0.50
R1892:Tap1	UTSW	17	34,413,915 (GRCm39)	missense	probably damaging	1.00
R1893:Tap1	UTSW	17	34,413,915 (GRCm39)	missense	probably damaging	1.00
R1952:Tap1	UTSW	17	34,412,481 (GRCm39)	missense	probably damaging	1.00
R2163:Tap1	UTSW	17	34,408,447 (GRCm39)	splice site	probably null
R3744:Tap1	UTSW	17	34,412,586 (GRCm39)	missense	probably damaging	1.00
R3883:Tap1	UTSW	17	34,412,232 (GRCm39)	missense	probably damaging	1.00
R3975:Tap1	UTSW	17	34,408,541 (GRCm39)	unclassified	probably benign
R4418:Tap1	UTSW	17	34,407,353 (GRCm39)	splice site	probably null
R4779:Tap1	UTSW	17	34,412,865 (GRCm39)	missense	probably damaging	1.00
R4913:Tap1	UTSW	17	34,412,468 (GRCm39)	missense	possibly damaging	0.94
R5715:Tap1	UTSW	17	34,411,868 (GRCm39)	nonsense	probably null
R5838:Tap1	UTSW	17	34,412,279 (GRCm39)	nonsense	probably null
R6248:Tap1	UTSW	17	34,412,151 (GRCm39)	missense	probably damaging	0.99
R6710:Tap1	UTSW	17	34,407,083 (GRCm39)	missense	possibly damaging	0.50
R6881:Tap1	UTSW	17	34,407,008 (GRCm39)	missense	probably damaging	0.99
R7437:Tap1	UTSW	17	34,409,616 (GRCm39)	nonsense	probably null
R7618:Tap1	UTSW	17	34,407,212 (GRCm39)	missense	possibly damaging	0.94
R7968:Tap1	UTSW	17	34,413,886 (GRCm39)	missense	probably damaging	0.99
R8115:Tap1	UTSW	17	34,412,293 (GRCm39)	splice site	probably null
R8146:Tap1	UTSW	17	34,408,206 (GRCm39)	missense	probably damaging	0.98
R8322:Tap1	UTSW	17	34,412,163 (GRCm39)	missense	probably damaging	1.00
R8539:Tap1	UTSW	17	34,408,409 (GRCm39)	missense	probably benign
R8751:Tap1	UTSW	17	34,412,133 (GRCm39)	missense	probably benign	0.14
R8883:Tap1	UTSW	17	34,406,867 (GRCm39)	missense	unknown
R8885:Tap1	UTSW	17	34,408,536 (GRCm39)	critical splice donor site	probably null
R9191:Tap1	UTSW	17	34,413,956 (GRCm39)	critical splice donor site	probably null
R9232:Tap1	UTSW	17	34,412,277 (GRCm39)	missense	probably benign	0.00
R9604:Tap1	UTSW	17	34,412,172 (GRCm39)	missense	probably damaging	0.99
R9656:Tap1	UTSW	17	34,412,525 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATATCGACAATGTGTCCCAGCC -3'
(R):5'- TGTAACAAGCACCTCCGCTC -3'

Sequencing Primer
(F):5'- CAGCCCTGGAAGCACAG -3'
(R):5'- TGGTAATATCTTTGCTCCCAGG -3'

Posted On

2019-10-17