Incidental Mutation 'R7516:Tmtc4'
ID 582486
Institutional Source Beutler Lab
Gene Symbol Tmtc4
Ensembl Gene ENSMUSG00000041594
Gene Name transmembrane and tetratricopeptide repeat containing 4
Synonyms 4930403J22Rik, 5730419O14Rik
MMRRC Submission 045589-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7516 (G1)
Quality Score 225.009
Status Not validated
Chromosome 14
Chromosomal Location 123156383-123220697 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 123180735 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Valine at position 326 (A326V)
Ref Sequence ENSEMBL: ENSMUSP00000046368 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000037726] [ENSMUST00000126867] [ENSMUST00000128969] [ENSMUST00000143189] [ENSMUST00000148661]
AlphaFold Q8BG19
Predicted Effect possibly damaging
Transcript: ENSMUST00000037726
AA Change: A326V

PolyPhen 2 Score 0.677 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000046368
Gene: ENSMUSG00000041594
AA Change: A326V

DomainStartEndE-ValueType
transmembrane domain 15 34 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
transmembrane domain 147 169 N/A INTRINSIC
transmembrane domain 174 191 N/A INTRINSIC
transmembrane domain 201 220 N/A INTRINSIC
transmembrane domain 227 249 N/A INTRINSIC
transmembrane domain 269 288 N/A INTRINSIC
Pfam:DUF1736 290 369 3e-35 PFAM
transmembrane domain 386 408 N/A INTRINSIC
transmembrane domain 413 435 N/A INTRINSIC
transmembrane domain 442 464 N/A INTRINSIC
TPR 482 515 2.49e-5 SMART
TPR 516 549 9.03e-3 SMART
TPR 550 583 2.49e-5 SMART
TPR 584 617 2.63e-4 SMART
TPR 618 651 5.78e-1 SMART
TPR 652 685 2.19e-1 SMART
TPR 686 719 1.37e-2 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000126867
AA Change: A326V

PolyPhen 2 Score 0.677 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000116379
Gene: ENSMUSG00000041594
AA Change: A326V

DomainStartEndE-ValueType
transmembrane domain 15 34 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
transmembrane domain 147 169 N/A INTRINSIC
transmembrane domain 174 191 N/A INTRINSIC
transmembrane domain 201 220 N/A INTRINSIC
transmembrane domain 227 249 N/A INTRINSIC
transmembrane domain 269 288 N/A INTRINSIC
Pfam:DUF1736 290 369 3e-35 PFAM
transmembrane domain 386 408 N/A INTRINSIC
transmembrane domain 413 435 N/A INTRINSIC
transmembrane domain 442 464 N/A INTRINSIC
TPR 482 515 2.49e-5 SMART
TPR 516 549 9.03e-3 SMART
TPR 550 583 2.49e-5 SMART
TPR 584 617 2.63e-4 SMART
TPR 618 651 5.78e-1 SMART
TPR 652 685 2.19e-1 SMART
TPR 686 719 1.37e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000128969
Predicted Effect probably benign
Transcript: ENSMUST00000143189
SMART Domains Protein: ENSMUSP00000116480
Gene: ENSMUSG00000041594

DomainStartEndE-ValueType
transmembrane domain 15 34 N/A INTRINSIC
transmembrane domain 100 122 N/A INTRINSIC
transmembrane domain 165 187 N/A INTRINSIC
transmembrane domain 200 219 N/A INTRINSIC
transmembrane domain 224 246 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000148661
AA Change: A326V

PolyPhen 2 Score 0.677 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000121523
Gene: ENSMUSG00000041594
AA Change: A326V

DomainStartEndE-ValueType
transmembrane domain 15 34 N/A INTRINSIC
transmembrane domain 110 132 N/A INTRINSIC
transmembrane domain 147 169 N/A INTRINSIC
transmembrane domain 174 191 N/A INTRINSIC
transmembrane domain 201 220 N/A INTRINSIC
transmembrane domain 227 249 N/A INTRINSIC
transmembrane domain 269 288 N/A INTRINSIC
Pfam:DUF1736 292 366 4.4e-36 PFAM
transmembrane domain 386 408 N/A INTRINSIC
transmembrane domain 413 435 N/A INTRINSIC
transmembrane domain 442 464 N/A INTRINSIC
TPR 482 515 2.49e-5 SMART
TPR 516 549 9.03e-3 SMART
TPR 550 583 2.49e-5 SMART
TPR 584 617 2.63e-4 SMART
TPR 618 651 5.78e-1 SMART
TPR 652 685 2.19e-1 SMART
TPR 686 719 1.37e-2 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.2%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 72 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam28 T A 14: 68,868,125 (GRCm39) I407F probably damaging Het
Agbl1 A G 7: 76,075,669 (GRCm39) Y437C probably damaging Het
Alkbh5 T C 11: 60,429,979 (GRCm39) V244A probably damaging Het
Arap1 T C 7: 101,058,538 (GRCm39) F1390L probably benign Het
Asph T C 4: 9,630,940 (GRCm39) D136G possibly damaging Het
Atp8a2 A T 14: 60,094,516 (GRCm39) Y841N probably damaging Het
Cald1 A T 6: 34,686,492 (GRCm39) probably benign Het
Capn11 A G 17: 45,949,766 (GRCm39) I400T possibly damaging Het
Cdh18 T A 15: 23,259,684 (GRCm39) probably null Het
Ces2h T A 8: 105,743,458 (GRCm39) L204Q probably damaging Het
Chrna3 G A 9: 54,922,653 (GRCm39) A385V probably benign Het
Clca4a A T 3: 144,672,009 (GRCm39) L311Q probably damaging Het
Clip1 A G 5: 123,721,448 (GRCm39) V1149A probably benign Het
Clip3 T A 7: 29,998,268 (GRCm39) V238D possibly damaging Het
Col12a1 A G 9: 79,520,192 (GRCm39) probably null Het
Coro2a A G 4: 46,562,992 (GRCm39) V54A probably benign Het
Crem T C 18: 3,299,141 (GRCm39) probably null Het
Dennd5b T C 6: 148,969,878 (GRCm39) I192V probably benign Het
Dst A G 1: 34,209,560 (GRCm39) N1209S probably benign Het
Ero1a T A 14: 45,525,480 (GRCm39) M385L probably benign Het
Fam13a A T 6: 58,932,248 (GRCm39) V375D probably damaging Het
Fgfbp3 T A 19: 36,896,324 (GRCm39) Y98F possibly damaging Het
Frem3 T C 8: 81,338,712 (GRCm39) V335A probably damaging Het
Gm19410 T A 8: 36,263,433 (GRCm39) D951E probably benign Het
Gpatch1 T C 7: 35,007,625 (GRCm39) D145G probably benign Het
H60c G T 10: 3,209,746 (GRCm39) C180* probably null Het
Hmcn1 T C 1: 150,498,718 (GRCm39) T4054A probably benign Het
Hrg A G 16: 22,780,048 (GRCm39) Y442C unknown Het
Hspg2 C T 4: 137,269,931 (GRCm39) R2327C possibly damaging Het
Klhl31 G T 9: 77,558,429 (GRCm39) A382S probably damaging Het
Knl1 T C 2: 118,901,179 (GRCm39) V960A probably damaging Het
Lztr1 C T 16: 17,327,525 (GRCm39) A76V possibly damaging Het
Me3 G T 7: 89,497,183 (GRCm39) E395* probably null Het
Morc2b G A 17: 33,356,435 (GRCm39) H446Y probably benign Het
Mroh7 A T 4: 106,548,316 (GRCm39) M1054K probably benign Het
Ms4a6b T C 19: 11,506,907 (GRCm39) V232A probably benign Het
Nmt2 C A 2: 3,313,767 (GRCm39) D224E probably damaging Het
Nox4 C A 7: 86,970,905 (GRCm39) R261S probably benign Het
Obscn T A 11: 59,015,416 (GRCm39) K1019* probably null Het
Or4a15 T A 2: 89,193,719 (GRCm39) N18I probably benign Het
Or4g7 T A 2: 111,309,282 (GRCm39) V51D probably benign Het
Or5p67 G A 7: 107,922,223 (GRCm39) S220F probably damaging Het
Or8k24 C T 2: 86,216,328 (GRCm39) V145I probably benign Het
Pcdha11 A T 18: 37,144,671 (GRCm39) N254I probably damaging Het
Pck2 T A 14: 55,779,913 (GRCm39) I54N probably benign Het
Pkd1l3 T A 8: 110,361,861 (GRCm39) W978R probably damaging Het
Plxna4 T C 6: 32,214,703 (GRCm39) T593A probably benign Het
Podn G A 4: 107,879,321 (GRCm39) R266W probably damaging Het
Ptpn22 A G 3: 103,792,854 (GRCm39) D335G probably benign Het
Pxn A G 5: 115,644,922 (GRCm39) D3G unknown Het
Rapgefl1 T G 11: 98,736,960 (GRCm39) V320G probably benign Het
Rel A G 11: 23,692,785 (GRCm39) I416T probably benign Het
Sema5b A G 16: 35,471,540 (GRCm39) N378D probably benign Het
Sh3bp4 C A 1: 89,073,368 (GRCm39) L739M probably damaging Het
Skint2 A T 4: 112,483,168 (GRCm39) D191V probably damaging Het
Slc3a1 T C 17: 85,371,190 (GRCm39) Y581H probably damaging Het
Smcr8 G T 11: 60,670,814 (GRCm39) C654F probably benign Het
Spta1 A C 1: 174,025,349 (GRCm39) Q738P probably damaging Het
Sptlc3 C A 2: 139,431,438 (GRCm39) A320D probably benign Het
Thnsl2 T A 6: 71,108,990 (GRCm39) K274* probably null Het
Tmed2 T A 5: 124,685,055 (GRCm39) I68K possibly damaging Het
Tnks2 T A 19: 36,849,064 (GRCm39) S179T possibly damaging Het
Trim34b G T 7: 103,978,918 (GRCm39) C55F probably damaging Het
Trpm4 T A 7: 44,954,444 (GRCm39) E1129V probably damaging Het
Tvp23b T C 11: 62,782,867 (GRCm39) S188P possibly damaging Het
Usp1 A G 4: 98,822,356 (GRCm39) T557A probably damaging Het
Vmn2r66 C T 7: 84,661,176 (GRCm39) C18Y possibly damaging Het
Vmn2r85 T A 10: 130,254,852 (GRCm39) T611S probably damaging Het
Vps13c T C 9: 67,862,289 (GRCm39) S2969P possibly damaging Het
Wdr74 T A 19: 8,713,554 (GRCm39) C62* probably null Het
Wfikkn1 A T 17: 26,097,020 (GRCm39) C435S probably damaging Het
Zbtb45 A T 7: 12,740,269 (GRCm39) F449I probably damaging Het
Other mutations in Tmtc4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01380:Tmtc4 APN 14 123,163,366 (GRCm39) splice site probably benign
IGL01408:Tmtc4 APN 14 123,163,366 (GRCm39) splice site probably benign
IGL01487:Tmtc4 APN 14 123,163,443 (GRCm39) missense probably benign 0.25
IGL01694:Tmtc4 APN 14 123,210,624 (GRCm39) missense possibly damaging 0.92
IGL01934:Tmtc4 APN 14 123,165,047 (GRCm39) nonsense probably null
IGL02456:Tmtc4 APN 14 123,163,374 (GRCm39) critical splice donor site probably null
IGL03116:Tmtc4 APN 14 123,165,044 (GRCm39) missense probably benign 0.02
IGL03326:Tmtc4 APN 14 123,182,952 (GRCm39) missense probably damaging 0.99
PIT4403001:Tmtc4 UTSW 14 123,210,641 (GRCm39) missense probably benign 0.01
R0344:Tmtc4 UTSW 14 123,215,572 (GRCm39) missense probably damaging 1.00
R0630:Tmtc4 UTSW 14 123,163,502 (GRCm39) splice site probably benign
R0849:Tmtc4 UTSW 14 123,182,966 (GRCm39) missense possibly damaging 0.62
R1129:Tmtc4 UTSW 14 123,180,565 (GRCm39) critical splice donor site probably null
R1601:Tmtc4 UTSW 14 123,182,238 (GRCm39) missense probably benign 0.01
R1835:Tmtc4 UTSW 14 123,179,400 (GRCm39) critical splice acceptor site probably null
R1966:Tmtc4 UTSW 14 123,165,011 (GRCm39) missense probably benign 0.31
R2024:Tmtc4 UTSW 14 123,158,677 (GRCm39) missense probably benign 0.02
R2025:Tmtc4 UTSW 14 123,158,677 (GRCm39) missense probably benign 0.02
R2026:Tmtc4 UTSW 14 123,158,677 (GRCm39) missense probably benign 0.02
R2027:Tmtc4 UTSW 14 123,158,677 (GRCm39) missense probably benign 0.02
R2256:Tmtc4 UTSW 14 123,178,820 (GRCm39) missense probably benign 0.09
R2439:Tmtc4 UTSW 14 123,209,315 (GRCm39) missense probably damaging 1.00
R3001:Tmtc4 UTSW 14 123,170,230 (GRCm39) critical splice donor site probably null
R3002:Tmtc4 UTSW 14 123,170,230 (GRCm39) critical splice donor site probably null
R3894:Tmtc4 UTSW 14 123,158,731 (GRCm39) splice site probably null
R4561:Tmtc4 UTSW 14 123,200,710 (GRCm39) missense probably benign 0.21
R4926:Tmtc4 UTSW 14 123,210,618 (GRCm39) missense probably damaging 1.00
R5000:Tmtc4 UTSW 14 123,170,743 (GRCm39) missense possibly damaging 0.46
R5024:Tmtc4 UTSW 14 123,178,714 (GRCm39) splice site probably null
R5104:Tmtc4 UTSW 14 123,170,257 (GRCm39) missense probably damaging 0.99
R5200:Tmtc4 UTSW 14 123,182,969 (GRCm39) missense probably benign 0.05
R5536:Tmtc4 UTSW 14 123,170,291 (GRCm39) missense probably benign 0.09
R5677:Tmtc4 UTSW 14 123,187,911 (GRCm39) missense probably damaging 1.00
R5768:Tmtc4 UTSW 14 123,170,565 (GRCm39) missense possibly damaging 0.91
R6467:Tmtc4 UTSW 14 123,163,391 (GRCm39) missense possibly damaging 0.80
R7317:Tmtc4 UTSW 14 123,215,593 (GRCm39) missense probably benign 0.00
R7539:Tmtc4 UTSW 14 123,215,701 (GRCm39) splice site probably null
R7584:Tmtc4 UTSW 14 123,215,563 (GRCm39) missense probably benign 0.01
R7821:Tmtc4 UTSW 14 123,209,289 (GRCm39) missense probably benign
R7903:Tmtc4 UTSW 14 123,165,060 (GRCm39) missense probably benign 0.00
R8969:Tmtc4 UTSW 14 123,179,224 (GRCm39) splice site probably benign
R9239:Tmtc4 UTSW 14 123,165,078 (GRCm39) missense possibly damaging 0.81
R9381:Tmtc4 UTSW 14 123,163,441 (GRCm39) missense probably benign 0.00
R9513:Tmtc4 UTSW 14 123,209,204 (GRCm39) missense probably benign 0.01
R9581:Tmtc4 UTSW 14 123,187,998 (GRCm39) missense probably benign
R9592:Tmtc4 UTSW 14 123,170,815 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GCAAAATGCTTCTGCTGCACAG -3'
(R):5'- TATGCTCAGAATACAAATGGGCAG -3'

Sequencing Primer
(F):5'- CAGAAGTTAAAATTCCATGCTGCCTC -3'
(R):5'- GCAGTATTTTATTTTTACACAACCGC -3'
Posted On 2019-10-17