Incidental Mutation 'R7530:Atp5mc2'
ID 583281
Institutional Source Beutler Lab
Gene Symbol Atp5mc2
Ensembl Gene ENSMUSG00000062683
Gene Name ATP synthase membrane subunit c locus 2
Synonyms Atp5g2, 1810041M08Rik
MMRRC Submission 045602-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.804) question?
Stock # R7530 (G1)
Quality Score 225.009
Status Validated
Chromosome 15
Chromosomal Location 102571303-102579482 bp(-) (GRCm39)
Type of Mutation start codon destroyed
DNA Base Change (assembly) A to T at 102576183 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Lysine at position 1 (M1K)
Ref Sequence ENSEMBL: ENSMUSP00000075057 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000075630] [ENSMUST00000185641] [ENSMUST00000186952] [ENSMUST00000187160]
AlphaFold P56383
Predicted Effect probably null
Transcript: ENSMUST00000075630
AA Change: M1K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000075057
Gene: ENSMUSG00000062683
AA Change: M1K

DomainStartEndE-ValueType
low complexity region 9 31 N/A INTRINSIC
Pfam:ATP-synt_C 78 143 1.7e-14 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000185641
AA Change: M1K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000140414
Gene: ENSMUSG00000062683
AA Change: M1K

DomainStartEndE-ValueType
low complexity region 9 31 N/A INTRINSIC
Pfam:ATP-synt_C 77 145 6.1e-19 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000186952
AA Change: M1K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
Predicted Effect probably benign
Transcript: ENSMUST00000187160
SMART Domains Protein: ENSMUSP00000140323
Gene: ENSMUSG00000062683

DomainStartEndE-ValueType
low complexity region 7 29 N/A INTRINSIC
transmembrane domain 77 99 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.2%
Validation Efficiency 98% (52/53)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and single representatives of the gamma, delta, and epsilon subunits. The proton channel likely has nine subunits (a, b, c, d, e, f, g, F6 and 8). There are three separate genes which encode subunit c of the proton channel and they specify precursors with different import sequences but identical mature proteins. The protein encoded by this gene is one of three precursors of subunit c. Alternatively spliced transcript variants encoding different isoforms have been identified. This gene has multiple pseudogenes. [provided by RefSeq, Jun 2010]
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
6430550D23Rik C T 2: 155,845,840 (GRCm39) V6I probably benign Het
Atp10a A G 7: 58,423,724 (GRCm39) T230A probably benign Het
Atp8a1 A C 5: 67,902,971 (GRCm39) L535R Het
Bsn A G 9: 107,989,155 (GRCm39) I2199T probably damaging Het
Ccdc73 A G 2: 104,824,915 (GRCm39) T155A Het
Cdc42bpg T G 19: 6,372,305 (GRCm39) F1430L probably benign Het
Cdc42bpg G T 19: 6,372,306 (GRCm39) V1431L probably benign Het
Chat A T 14: 32,130,915 (GRCm39) Y575* probably null Het
Cimip4 T C 15: 78,270,516 (GRCm39) D84G probably benign Het
Col6a4 A T 9: 105,945,589 (GRCm39) C842S probably damaging Het
Coq2 T C 5: 100,822,008 (GRCm39) S34G probably benign Het
Crybg1 C T 10: 43,875,069 (GRCm39) A680T possibly damaging Het
Ctsr T A 13: 61,310,931 (GRCm39) K38N probably damaging Het
Dpm2 T C 2: 32,462,313 (GRCm39) F33S probably damaging Het
Ecpas A G 4: 58,815,317 (GRCm39) M1322T probably damaging Het
Ext2 T A 2: 93,491,998 (GRCm39) H564L probably benign Het
Fbxl2 G T 9: 113,818,241 (GRCm39) H202N probably benign Het
Fra10ac1 A T 19: 38,204,353 (GRCm39) Y74* probably null Het
Greb1 T A 12: 16,767,207 (GRCm39) I332F probably benign Het
Ifnar2 A G 16: 91,201,201 (GRCm39) S481G probably benign Het
Igkv9-123 G A 6: 67,931,381 (GRCm39) P62S possibly damaging Het
Iqub T C 6: 24,450,622 (GRCm39) Q659R probably benign Het
Kansl2 T C 15: 98,426,896 (GRCm39) T242A probably benign Het
Kif28 C T 1: 179,536,045 (GRCm39) G543D probably benign Het
Lsg1 A G 16: 30,401,419 (GRCm39) S93P possibly damaging Het
Med23 T A 10: 24,781,851 (GRCm39) C1052S probably benign Het
Mgam G T 6: 40,686,152 (GRCm39) probably null Het
Mtmr4 C T 11: 87,502,702 (GRCm39) R919W probably damaging Het
Muc5ac G T 7: 141,367,536 (GRCm39) V2986L possibly damaging Het
Myo5b A G 18: 74,864,802 (GRCm39) E1340G probably benign Het
Nkd2 T C 13: 73,995,078 (GRCm39) D40G possibly damaging Het
Nudt5 T C 2: 5,869,179 (GRCm39) L135S probably damaging Het
Oca2 A C 7: 55,981,720 (GRCm39) D614A probably damaging Het
Or1e16 A G 11: 73,279,189 (GRCm39) V221A possibly damaging Het
Or6c201 A C 10: 128,969,849 (GRCm39) probably null Het
Or8k24 T A 2: 86,216,515 (GRCm39) L82F probably damaging Het
Plec C A 15: 76,069,844 (GRCm39) A991S unknown Het
Plekhg2 G A 7: 28,061,353 (GRCm39) R817C probably damaging Het
Plrg1 T A 3: 82,965,989 (GRCm39) L48H probably damaging Het
Prx A G 7: 27,207,397 (GRCm39) E18G probably damaging Het
Ptprf T C 4: 118,069,945 (GRCm39) Y1479C probably damaging Het
Rap1b A T 10: 117,653,357 (GRCm39) Y159* probably null Het
Rbck1 T C 2: 152,166,212 (GRCm39) E242G possibly damaging Het
Rxfp1 T C 3: 79,557,768 (GRCm39) D570G probably benign Het
Slc35f5 G T 1: 125,512,275 (GRCm39) L358F probably damaging Het
Smarcd2 A G 11: 106,156,587 (GRCm39) W274R probably damaging Het
Spata6l A T 19: 28,926,121 (GRCm39) Y43* probably null Het
Ssu72 A G 4: 155,815,786 (GRCm39) T77A probably benign Het
Tomm40 G A 7: 19,436,829 (GRCm39) T297I possibly damaging Het
Urb1 A T 16: 90,558,522 (GRCm39) I1743N probably damaging Het
Utp20 G A 10: 88,588,868 (GRCm39) R2434C probably damaging Het
Other mutations in Atp5mc2
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0091:Atp5mc2 UTSW 15 102,571,492 (GRCm39) missense probably damaging 1.00
R7400:Atp5mc2 UTSW 15 102,573,547 (GRCm39) missense possibly damaging 0.54
R9259:Atp5mc2 UTSW 15 102,571,561 (GRCm39) missense probably damaging 1.00
R9609:Atp5mc2 UTSW 15 102,573,580 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- CACTTTTCCAGGCAGAAGGC -3'
(R):5'- GCCATGAAAGTCACTTGATTTCAG -3'

Sequencing Primer
(F):5'- TCTTTCACTGCAGGCACAGG -3'
(R):5'- AAGTCACTTGATTTCAGGATTCTGG -3'
Posted On 2019-10-17