Incidental Mutation 'R7552:Snx29'
ID 584514
Institutional Source Beutler Lab
Gene Symbol Snx29
Ensembl Gene ENSMUSG00000071669
Gene Name sorting nexin 29
Synonyms 4933437K13Rik, LOC381035, LOC385605, Gm11170, Rundc2a
MMRRC Submission 045621-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7552 (G1)
Quality Score 225.009
Status Validated
Chromosome 16
Chromosomal Location 11322908-11755472 bp(+) (GRCm38)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) T to A at 11420785 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000093993 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000096273] [ENSMUST00000096273] [ENSMUST00000096273] [ENSMUST00000122168] [ENSMUST00000122168] [ENSMUST00000122168] [ENSMUST00000150993] [ENSMUST00000150993] [ENSMUST00000150993] [ENSMUST00000180792] [ENSMUST00000180792] [ENSMUST00000180792]
AlphaFold Q9D3S3
Predicted Effect probably null
Transcript: ENSMUST00000096273
SMART Domains Protein: ENSMUSP00000093993
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 103 120 N/A INTRINSIC
coiled coil region 125 206 N/A INTRINSIC
PX 319 422 3.13e-9 SMART
Predicted Effect probably null
Transcript: ENSMUST00000096273
SMART Domains Protein: ENSMUSP00000093993
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 103 120 N/A INTRINSIC
coiled coil region 125 206 N/A INTRINSIC
PX 319 422 3.13e-9 SMART
Predicted Effect probably null
Transcript: ENSMUST00000096273
SMART Domains Protein: ENSMUSP00000093993
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 103 120 N/A INTRINSIC
coiled coil region 125 206 N/A INTRINSIC
PX 319 422 3.13e-9 SMART
Predicted Effect probably null
Transcript: ENSMUST00000122168
SMART Domains Protein: ENSMUSP00000113595
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 88 105 N/A INTRINSIC
coiled coil region 110 191 N/A INTRINSIC
Blast:PX 301 326 1e-7 BLAST
Predicted Effect probably null
Transcript: ENSMUST00000122168
SMART Domains Protein: ENSMUSP00000113595
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 88 105 N/A INTRINSIC
coiled coil region 110 191 N/A INTRINSIC
Blast:PX 301 326 1e-7 BLAST
Predicted Effect probably null
Transcript: ENSMUST00000122168
SMART Domains Protein: ENSMUSP00000113595
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 88 105 N/A INTRINSIC
coiled coil region 110 191 N/A INTRINSIC
Blast:PX 301 326 1e-7 BLAST
Predicted Effect probably null
Transcript: ENSMUST00000150993
SMART Domains Protein: ENSMUSP00000117896
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 1 18 N/A INTRINSIC
coiled coil region 23 104 N/A INTRINSIC
Blast:PX 217 245 3e-8 BLAST
Predicted Effect probably null
Transcript: ENSMUST00000150993
SMART Domains Protein: ENSMUSP00000117896
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 1 18 N/A INTRINSIC
coiled coil region 23 104 N/A INTRINSIC
Blast:PX 217 245 3e-8 BLAST
Predicted Effect probably null
Transcript: ENSMUST00000150993
SMART Domains Protein: ENSMUSP00000117896
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 1 18 N/A INTRINSIC
coiled coil region 23 104 N/A INTRINSIC
Blast:PX 217 245 3e-8 BLAST
Predicted Effect probably null
Transcript: ENSMUST00000180792
SMART Domains Protein: ENSMUSP00000138025
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 64 74 N/A INTRINSIC
RUN 115 178 7.89e-26 SMART
internal_repeat_1 192 211 2.63e-5 PROSPERO
internal_repeat_1 203 222 2.63e-5 PROSPERO
low complexity region 252 262 N/A INTRINSIC
low complexity region 270 275 N/A INTRINSIC
low complexity region 314 323 N/A INTRINSIC
low complexity region 445 462 N/A INTRINSIC
coiled coil region 467 548 N/A INTRINSIC
PX 661 764 3.13e-9 SMART
Predicted Effect probably null
Transcript: ENSMUST00000180792
SMART Domains Protein: ENSMUSP00000138025
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 64 74 N/A INTRINSIC
RUN 115 178 7.89e-26 SMART
internal_repeat_1 192 211 2.63e-5 PROSPERO
internal_repeat_1 203 222 2.63e-5 PROSPERO
low complexity region 252 262 N/A INTRINSIC
low complexity region 270 275 N/A INTRINSIC
low complexity region 314 323 N/A INTRINSIC
low complexity region 445 462 N/A INTRINSIC
coiled coil region 467 548 N/A INTRINSIC
PX 661 764 3.13e-9 SMART
Predicted Effect probably null
Transcript: ENSMUST00000180792
SMART Domains Protein: ENSMUSP00000138025
Gene: ENSMUSG00000071669

DomainStartEndE-ValueType
low complexity region 64 74 N/A INTRINSIC
RUN 115 178 7.89e-26 SMART
internal_repeat_1 192 211 2.63e-5 PROSPERO
internal_repeat_1 203 222 2.63e-5 PROSPERO
low complexity region 252 262 N/A INTRINSIC
low complexity region 270 275 N/A INTRINSIC
low complexity region 314 323 N/A INTRINSIC
low complexity region 445 462 N/A INTRINSIC
coiled coil region 467 548 N/A INTRINSIC
PX 661 764 3.13e-9 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency 100% (89/89)
Allele List at MGI
Other mutations in this stock
Total: 87 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abhd17a A G 10: 80,583,903 (GRCm38) Y290H probably benign Het
Aco2 T C 15: 81,903,941 (GRCm38) V257A probably damaging Het
Adam26a C A 8: 43,569,970 (GRCm38) C161F possibly damaging Het
Adam9 G A 8: 24,955,972 (GRCm38) P820S unknown Het
Adcy4 G A 14: 55,773,465 (GRCm38) T665M probably benign Het
AF529169 T A 9: 89,601,835 (GRCm38) H503L probably benign Het
Ahnak T A 19: 9,006,824 (GRCm38) M1824K probably benign Het
Alpi T C 1: 87,099,073 (GRCm38) N428D probably benign Het
Ano5 C T 7: 51,546,780 (GRCm38) P153L probably benign Het
Atp1a1 A T 3: 101,582,121 (GRCm38) L725* probably null Het
Atp8b2 G A 3: 89,946,764 (GRCm38) T595I probably damaging Het
Ccdc66 T C 14: 27,498,863 (GRCm38) I35V possibly damaging Het
Cd163 A G 6: 124,307,228 (GRCm38) T120A probably benign Het
Cmah A T 13: 24,456,955 (GRCm38) T396S possibly damaging Het
Cmya5 C T 13: 93,069,312 (GRCm38) V3350I probably benign Het
Commd9 A C 2: 101,901,065 (GRCm38) K198N probably damaging Het
Cxcr1 A G 1: 74,192,614 (GRCm38) V83A probably benign Het
D630045J12Rik A G 6: 38,148,448 (GRCm38) S1544P probably damaging Het
Ddt A T 10: 75,773,214 (GRCm38) probably null Het
Depdc7 A G 2: 104,727,240 (GRCm38) S222P possibly damaging Het
Ehd2 A G 7: 15,950,506 (GRCm38) I456T probably damaging Het
Epas1 A T 17: 86,829,043 (GRCm38) M748L probably benign Het
Esr1 G A 10: 4,856,903 (GRCm38) R273H probably damaging Het
Fras1 G A 5: 96,768,438 (GRCm38) D3444N probably damaging Het
Gm7682 G A 5: 94,448,535 (GRCm38) C477Y probably damaging Het
Hand2 A G 8: 57,322,237 (GRCm38) R111G probably damaging Het
Hecw1 A T 13: 14,316,250 (GRCm38) V306E probably damaging Het
Ift140 T C 17: 25,033,115 (GRCm38) I312T probably benign Het
Ikbke A T 1: 131,272,150 (GRCm38) L257* probably null Het
Kcnk5 G A 14: 20,142,281 (GRCm38) P271S probably benign Het
Lama1 T C 17: 67,737,667 (GRCm38) V187A Het
Lemd2 A T 17: 27,193,836 (GRCm38) probably null Het
Lig3 T A 11: 82,788,891 (GRCm38) D341E probably benign Het
Lpcat1 C T 13: 73,494,895 (GRCm38) S196L probably damaging Het
Lrp1b A T 2: 40,677,570 (GRCm38) D4048E Het
Lrrfip1 G A 1: 91,105,283 (GRCm38) E158K probably damaging Het
Mcm5 T C 8: 75,121,592 (GRCm38) S490P probably damaging Het
Mia3 A C 1: 183,365,695 (GRCm38) Y73* probably null Het
Msr1 A T 8: 39,623,962 (GRCm38) N202K probably benign Het
N4bp2l2 A T 5: 150,661,821 (GRCm38) Y231* probably null Het
Nbeal2 A G 9: 110,653,917 (GRCm38) W11R probably benign Het
Ncor1 T C 11: 62,373,424 (GRCm38) E384G possibly damaging Het
Neb A G 2: 52,247,190 (GRCm38) V254A Het
Nlrp9b T C 7: 20,045,766 (GRCm38) S785P probably benign Het
Olfr1024 A G 2: 85,904,103 (GRCm38) V317A probably benign Het
Olfr1191-ps1 A G 2: 88,643,408 (GRCm38) I214V probably benign Het
Olfr1258 G T 2: 89,930,720 (GRCm38) D304Y probably benign Het
Olfr2 T C 7: 107,001,327 (GRCm38) T178A probably benign Het
Olfr791 T A 10: 129,526,560 (GRCm38) F111Y possibly damaging Het
Oprd1 T G 4: 132,113,781 (GRCm38) I289L possibly damaging Het
Orc1 A G 4: 108,588,754 (GRCm38) N23S probably benign Het
Paip1 A T 13: 119,440,820 (GRCm38) H149L possibly damaging Het
Pdhx A T 2: 103,046,754 (GRCm38) D103E probably benign Het
Pi4ka T C 16: 17,291,216 (GRCm38) Y1614C Het
Pias3 ACC AC 3: 96,701,385 (GRCm38) probably null Het
Pigb A G 9: 73,034,488 (GRCm38) V163A probably benign Het
Pla2g4d A G 2: 120,284,139 (GRCm38) I37T possibly damaging Het
Ppfia1 A T 7: 144,506,245 (GRCm38) V610D probably damaging Het
Prss1 T C 6: 41,462,573 (GRCm38) V80A probably benign Het
Psph G A 5: 129,770,736 (GRCm38) R49W probably benign Het
Qrich2 T C 11: 116,456,254 (GRCm38) Y1248C possibly damaging Het
Rlbp1 T A 7: 79,380,113 (GRCm38) Y124F probably damaging Het
Scn4a T A 11: 106,349,169 (GRCm38) E74V probably benign Het
Sdk2 A T 11: 113,873,213 (GRCm38) I249N possibly damaging Het
Sgsh A T 11: 119,346,552 (GRCm38) L412Q probably damaging Het
Shank1 C A 7: 44,353,028 (GRCm38) D1390E probably benign Het
Slc12a6 A G 2: 112,341,974 (GRCm38) D421G probably damaging Het
Spata31d1c A G 13: 65,036,123 (GRCm38) Y493C probably damaging Het
Stmn4 G A 14: 66,356,278 (GRCm38) G40E probably damaging Het
Stox2 A G 8: 47,203,119 (GRCm38) probably null Het
Strada T C 11: 106,187,004 (GRCm38) S45G unknown Het
Taco1 G A 11: 106,071,948 (GRCm38) G154S probably benign Het
Tas2r121 T C 6: 132,700,542 (GRCm38) M156V probably benign Het
Tbc1d31 A G 15: 57,940,740 (GRCm38) S384G probably benign Het
Tbc1d9 A T 8: 83,239,931 (GRCm38) D387V probably damaging Het
Tet3 A G 6: 83,368,307 (GRCm38) L1716P probably damaging Het
Thbs1 A G 2: 118,113,362 (GRCm38) K154E possibly damaging Het
Ush2a T C 1: 188,267,044 (GRCm38) Y184H possibly damaging Het
Vmn1r235 C A 17: 21,261,451 (GRCm38) Q13K probably benign Het
Vmn2r15 A T 5: 109,292,908 (GRCm38) Y361* probably null Het
Vmn2r88 A T 14: 51,410,858 (GRCm38) probably null Het
Vps54 T C 11: 21,298,831 (GRCm38) V460A probably benign Het
Wdr64 A G 1: 175,785,581 (GRCm38) N674S possibly damaging Het
Zfp592 A G 7: 81,023,642 (GRCm38) D118G probably benign Het
Zfp763 A G 17: 33,018,651 (GRCm38) Y507H probably benign Het
Zfp934 T C 13: 62,492,891 (GRCm38) E16G probably damaging Het
Zfyve26 G A 12: 79,290,957 (GRCm38) L94F probably damaging Het
Other mutations in Snx29
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00733:Snx29 APN 16 11,403,502 (GRCm38) missense probably damaging 0.97
IGL02207:Snx29 APN 16 11,738,352 (GRCm38) missense probably damaging 1.00
PIT1430001:Snx29 UTSW 16 11,403,624 (GRCm38) missense probably benign 0.00
PIT4810001:Snx29 UTSW 16 11,400,981 (GRCm38) missense probably damaging 1.00
R0240:Snx29 UTSW 16 11,660,553 (GRCm38) missense probably damaging 1.00
R0240:Snx29 UTSW 16 11,660,553 (GRCm38) missense probably damaging 1.00
R0276:Snx29 UTSW 16 11,738,373 (GRCm38) missense probably benign 0.01
R0506:Snx29 UTSW 16 11,395,303 (GRCm38) missense probably benign 0.15
R0621:Snx29 UTSW 16 11,405,787 (GRCm38) splice site probably null
R0975:Snx29 UTSW 16 11,347,871 (GRCm38) missense possibly damaging 0.66
R1225:Snx29 UTSW 16 11,420,686 (GRCm38) intron probably benign
R1406:Snx29 UTSW 16 11,399,793 (GRCm38) missense probably benign 0.38
R1406:Snx29 UTSW 16 11,399,793 (GRCm38) missense probably benign 0.38
R1452:Snx29 UTSW 16 11,631,471 (GRCm38) missense probably damaging 1.00
R1515:Snx29 UTSW 16 11,399,837 (GRCm38) critical splice donor site probably null
R1874:Snx29 UTSW 16 11,367,681 (GRCm38) missense probably benign 0.01
R1953:Snx29 UTSW 16 11,399,783 (GRCm38) nonsense probably null
R1978:Snx29 UTSW 16 11,367,724 (GRCm38) missense probably benign 0.23
R2054:Snx29 UTSW 16 11,631,492 (GRCm38) missense probably damaging 1.00
R2105:Snx29 UTSW 16 11,511,034 (GRCm38) missense possibly damaging 0.72
R2128:Snx29 UTSW 16 11,400,971 (GRCm38) missense probably damaging 0.98
R2152:Snx29 UTSW 16 11,400,843 (GRCm38) missense possibly damaging 0.95
R2912:Snx29 UTSW 16 11,447,453 (GRCm38) missense probably damaging 0.99
R2913:Snx29 UTSW 16 11,447,453 (GRCm38) missense probably damaging 0.99
R2914:Snx29 UTSW 16 11,447,453 (GRCm38) missense probably damaging 0.99
R4468:Snx29 UTSW 16 11,420,701 (GRCm38) splice site probably null
R4469:Snx29 UTSW 16 11,420,701 (GRCm38) splice site probably null
R4612:Snx29 UTSW 16 11,447,495 (GRCm38) missense probably damaging 0.99
R4744:Snx29 UTSW 16 11,349,909 (GRCm38) nonsense probably null
R4798:Snx29 UTSW 16 11,420,736 (GRCm38) missense probably damaging 1.00
R5000:Snx29 UTSW 16 11,403,507 (GRCm38) missense probably damaging 0.99
R5165:Snx29 UTSW 16 11,420,775 (GRCm38) missense probably damaging 0.98
R5207:Snx29 UTSW 16 11,738,363 (GRCm38) missense probably damaging 1.00
R5235:Snx29 UTSW 16 11,413,246 (GRCm38) missense possibly damaging 0.94
R5274:Snx29 UTSW 16 11,738,404 (GRCm38) missense probably damaging 1.00
R5277:Snx29 UTSW 16 11,399,824 (GRCm38) missense possibly damaging 0.82
R5462:Snx29 UTSW 16 11,511,012 (GRCm38) missense possibly damaging 0.89
R5655:Snx29 UTSW 16 11,755,321 (GRCm38) missense probably damaging 1.00
R6036:Snx29 UTSW 16 11,738,437 (GRCm38) splice site probably null
R6036:Snx29 UTSW 16 11,738,437 (GRCm38) splice site probably null
R6326:Snx29 UTSW 16 11,403,566 (GRCm38) missense probably benign
R6576:Snx29 UTSW 16 11,715,056 (GRCm38) critical splice donor site probably null
R7406:Snx29 UTSW 16 11,755,316 (GRCm38) missense probably damaging 1.00
R7555:Snx29 UTSW 16 11,400,942 (GRCm38) missense probably benign 0.02
R7736:Snx29 UTSW 16 11,367,724 (GRCm38) missense probably benign 0.23
R7962:Snx29 UTSW 16 11,413,357 (GRCm38) critical splice donor site probably null
R8101:Snx29 UTSW 16 11,571,716 (GRCm38) missense probably benign 0.16
R8415:Snx29 UTSW 16 11,447,427 (GRCm38) missense probably damaging 1.00
R8549:Snx29 UTSW 16 11,715,056 (GRCm38) critical splice donor site probably null
R9010:Snx29 UTSW 16 11,631,527 (GRCm38) missense probably benign 0.00
R9091:Snx29 UTSW 16 11,395,291 (GRCm38) missense probably benign 0.33
R9099:Snx29 UTSW 16 11,660,571 (GRCm38) missense probably damaging 1.00
R9176:Snx29 UTSW 16 11,418,864 (GRCm38) missense probably benign
R9258:Snx29 UTSW 16 11,714,935 (GRCm38) missense possibly damaging 0.78
R9270:Snx29 UTSW 16 11,395,291 (GRCm38) missense probably benign 0.33
R9672:Snx29 UTSW 16 11,660,651 (GRCm38) missense probably benign 0.00
R9778:Snx29 UTSW 16 11,405,745 (GRCm38) missense possibly damaging 0.90
Predicted Primers PCR Primer
(F):5'- TTCCTGGGGAAACGTTTTGC -3'
(R):5'- CAGAAGGTAGCTTAGAAACCGC -3'

Sequencing Primer
(F):5'- GGAAACGTTTTGCCTGAGAG -3'
(R):5'- GCACAGAAGGTTCCTTGCATC -3'
Posted On 2019-10-17