Mutagenetix > Incidental Mutation

Incidental Mutation 'R7555:Psg17'

584692

Institutional Source

Beutler Lab

Gene Symbol

Psg17

Ensembl Gene

ENSMUSG00000004540

Gene Name

pregnancy specific glycoprotein 17

Synonyms

mmCGM5, Cea-2, Cea2

MMRRC Submission

045623-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7555 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

18813937-18821607 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 18817094 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Asparagine at position 279 (D279N)

Ref Sequence

ENSEMBL: ENSMUSP00000004655 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004655]

AlphaFold

Q62056

Predicted Effect

probably benign
Transcript: ENSMUST00000004655
AA Change: D279N

PolyPhen 2 Score 0.027 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000004655
Gene: ENSMUSG00000004540
AA Change: D279N

Domain	Start	End	E-Value	Type
low complexity region	19	34	N/A	INTRINSIC
IG	40	141	1.84e-2	SMART
IG	160	261	3.63e0	SMART
IG	280	381	2.03e-4	SMART
IGc2	397	461	2.35e-9	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (83/83)

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9430007A20Rik	T	A	4: 144,522,354 (GRCm38)	I97N	probably damaging	Het
Acvrl1	A	G	15: 101,143,473 (GRCm38)	H502R	probably benign	Het
Adgrf4	T	C	17: 42,672,603 (GRCm38)	S63G	probably benign	Het
Agbl2	C	A	2: 90,791,555 (GRCm38)	L129I	probably damaging	Het
Ankrd11	C	A	8: 122,887,406 (GRCm38)	A2542S	probably damaging	Het
Armc9	A	G	1: 86,275,678 (GRCm38)	K818R	probably damaging	Het
Arsj	T	A	3: 126,438,236 (GRCm38)	C210*	probably null	Het
Aspscr1	C	T	11: 120,673,100 (GRCm38)	A11V	unknown	Het
Bicc1	G	T	10: 70,956,291 (GRCm38)	Q296K	possibly damaging	Het
Borcs5	A	C	6: 134,685,979 (GRCm38)	Q73P	probably benign	Het
Capn15	G	T	17: 25,963,432 (GRCm38)	D567E	probably damaging	Het
Catsperg1	A	C	7: 29,189,814 (GRCm38)	I866S	probably damaging	Het
Ccdc27	G	T	4: 154,041,817 (GRCm38)	H72N	unknown	Het
Ccser2	A	T	14: 36,879,500 (GRCm38)	M309K	possibly damaging	Het
Cd1d2	A	G	3: 86,987,101 (GRCm38)	S59G	probably benign	Het
Chml	G	A	1: 175,687,890 (GRCm38)	P155L	probably benign	Het
Csmd2	C	T	4: 128,452,458 (GRCm38)	P1504S		Het
Dcbld2	A	G	16: 58,448,718 (GRCm38)		probably null	Het
Ddx21	C	T	10: 62,598,243 (GRCm38)	E246K	probably benign	Het
Dhx29	C	T	13: 112,927,642 (GRCm38)		probably benign	Het
Dis3l	A	C	9: 64,311,937 (GRCm38)	Y570*	probably null	Het
Dnah14	T	A	1: 181,770,054 (GRCm38)	Y3623N	probably benign	Het
Dock8	A	G	19: 25,175,400 (GRCm38)	D1610G	probably damaging	Het
Dync1h1	T	C	12: 110,630,625 (GRCm38)	S1669P	probably benign	Het
Eif2ak4	T	A	2: 118,417,283 (GRCm38)	I267N	possibly damaging	Het
Ern2	A	T	7: 122,170,241 (GRCm38)	V854E	probably damaging	Het
Fuca2	G	A	10: 13,507,430 (GRCm38)		probably null	Het
Gbp10	G	A	5: 105,236,149 (GRCm38)		probably benign	Het
Gm1110	T	A	9: 26,893,628 (GRCm38)	T380S	probably benign	Het
Gm13128	T	C	4: 144,332,741 (GRCm38)	F341L	probably benign	Het
Gm5788	A	C	12: 87,494,735 (GRCm38)	K5N	unknown	Het
Gm6460	A	T	5: 11,597,612 (GRCm38)	N106Y	probably damaging	Het
Golga2	G	A	2: 32,288,166 (GRCm38)	R29H	probably benign	Het
Grik5	T	C	7: 25,060,597 (GRCm38)	E259G	probably benign	Het
Grm3	T	C	5: 9,570,000 (GRCm38)	T415A	probably benign	Het
Gtf3c1	A	G	7: 125,645,670 (GRCm38)	Y1731H	probably damaging	Het
Hectd2	T	C	19: 36,612,403 (GRCm38)	C643R	probably damaging	Het
Hgfac	T	C	5: 35,042,628 (GRCm38)	S118P	probably damaging	Het
Hmcn1	A	G	1: 150,604,874 (GRCm38)	V4517A	probably benign	Het
Hnrnpc	A	T	14: 52,075,153 (GRCm38)	L290*	probably null	Het
Homer3	A	G	8: 70,289,413 (GRCm38)	E108G	probably damaging	Het
Hsd17b3	G	T	13: 64,072,002 (GRCm38)	S141R	probably benign	Het
Hspa12b	C	T	2: 131,138,476 (GRCm38)	T105I	probably damaging	Het
Ifi202b	T	C	1: 173,972,221 (GRCm38)	I231M	probably damaging	Het
Inhba	T	A	13: 16,017,637 (GRCm38)	N114K	probably benign	Het
Kmt2b	C	A	7: 30,569,410 (GRCm38)	M2631I	possibly damaging	Het
Loxhd1	C	T	18: 77,395,365 (GRCm38)	T1214I	probably damaging	Het
Lrp1	G	T	10: 127,546,862 (GRCm38)	N3683K	probably damaging	Het
Lrrc8e	A	G	8: 4,234,363 (GRCm38)	K196R	probably benign	Het
Lrrn3	A	T	12: 41,452,911 (GRCm38)	M469K	probably benign	Het
Mafb	T	C	2: 160,365,829 (GRCm38)	E283G	probably damaging	Het
Mapt	C	A	11: 104,298,702 (GRCm38)	P182Q	probably benign	Het
Mmp14	G	T	14: 54,437,742 (GRCm38)	R277L	possibly damaging	Het
Mucl2	T	A	15: 103,897,445 (GRCm38)	N82I	probably benign	Het
Nsun6	T	A	2: 14,996,339 (GRCm38)	T469S	possibly damaging	Het
Olfr1076	A	C	2: 86,509,347 (GRCm38)	D296A	probably damaging	Het
Olfr1342	T	C	4: 118,689,642 (GRCm38)	D270G	possibly damaging	Het
Olfr507	G	C	7: 108,622,726 (GRCm38)	A305P	probably damaging	Het
Osbpl5	A	T	7: 143,694,933 (GRCm38)	F631I	possibly damaging	Het
Otud3	G	T	4: 138,901,885 (GRCm38)	D190E	possibly damaging	Het
Pcdhb6	A	T	18: 37,335,279 (GRCm38)	I418F	possibly damaging	Het
Per1	G	A	11: 69,106,513 (GRCm38)	R838H	probably damaging	Het
Per2	G	A	1: 91,435,135 (GRCm38)	P395S	probably damaging	Het
Per3	G	A	4: 151,018,058 (GRCm38)	Q583*	probably null	Het
Pkhd1l1	A	T	15: 44,550,761 (GRCm38)	H2808L	possibly damaging	Het
Ppfia2	A	G	10: 106,927,826 (GRCm38)	T1227A	probably benign	Het
Rnf167	A	G	11: 70,650,797 (GRCm38)	D235G	probably benign	Het
Rxfp3	A	G	15: 11,036,276 (GRCm38)	S337P	probably damaging	Het
Sall1	T	C	8: 89,033,158 (GRCm38)	D106G	possibly damaging	Het
Sema4f	A	G	6: 82,914,056 (GRCm38)	V590A	probably benign	Het
Setd1b	A	G	5: 123,157,757 (GRCm38)	D1102G	unknown	Het
Six2	C	A	17: 85,687,707 (GRCm38)	K82N	probably damaging	Het
Snx29	T	C	16: 11,400,942 (GRCm38)	M214T	probably benign	Het
Son	T	C	16: 91,658,922 (GRCm38)	L1519P	probably damaging	Het
Spin1	C	T	13: 51,149,049 (GRCm38)	S226L	probably benign	Het
Stxbp5l	T	C	16: 37,323,603 (GRCm38)	D131G	probably damaging	Het
Svep1	T	C	4: 58,069,422 (GRCm38)	Y2788C	probably damaging	Het
Tbl3	C	A	17: 24,701,976 (GRCm38)		probably null	Het
Themis	A	T	10: 28,781,702 (GRCm38)	I242L	possibly damaging	Het
Tmem203	G	A	2: 25,255,730 (GRCm38)	V21M	probably benign	Het
Trp53inp1	T	C	4: 11,169,750 (GRCm38)	C171R	probably benign	Het
Tsg101	A	G	7: 46,913,411 (GRCm38)	Y32H	probably damaging	Het
Tyw1	A	G	5: 130,274,706 (GRCm38)	D305G	probably damaging	Het
Vmn1r40	A	T	6: 89,715,044 (GRCm38)	Y281F	probably damaging	Het
Vmn2r105	T	A	17: 20,227,675 (GRCm38)	T296S	probably damaging	Het
Vmn2r13	T	C	5: 109,171,691 (GRCm38)		probably null	Het
Zfp933	A	G	4: 147,826,132 (GRCm38)	F336L	probably damaging	Het

Other mutations in Psg17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00885:Psg17	APN	7	18,820,166 (GRCm38)	missense	probably damaging	1.00
IGL01649:Psg17	APN	7	18,816,802 (GRCm38)	missense	possibly damaging	0.60
IGL02171:Psg17	APN	7	18,818,787 (GRCm38)	missense	probably damaging	0.98
PIT4151001:Psg17	UTSW	7	18,814,605 (GRCm38)	missense	probably benign	0.26
R1178:Psg17	UTSW	7	18,814,455 (GRCm38)	missense	probably benign	0.13
R1767:Psg17	UTSW	7	18,816,802 (GRCm38)	missense	possibly damaging	0.60
R1991:Psg17	UTSW	7	18,814,652 (GRCm38)	missense	probably benign	0.02
R4428:Psg17	UTSW	7	18,816,792 (GRCm38)	missense	probably benign	0.31
R5285:Psg17	UTSW	7	18,820,201 (GRCm38)	missense	probably benign	0.01
R5507:Psg17	UTSW	7	18,819,926 (GRCm38)	missense	probably benign	0.04
R5516:Psg17	UTSW	7	18,814,533 (GRCm38)	missense	probably benign	0.30
R5837:Psg17	UTSW	7	18,820,215 (GRCm38)	missense	possibly damaging	0.58
R6481:Psg17	UTSW	7	18,814,450 (GRCm38)	missense	probably damaging	1.00
R6817:Psg17	UTSW	7	18,814,640 (GRCm38)	missense	probably damaging	1.00
R7124:Psg17	UTSW	7	18,814,497 (GRCm38)	missense	probably damaging	1.00
R7124:Psg17	UTSW	7	18,814,496 (GRCm38)	missense	probably damaging	1.00
R7243:Psg17	UTSW	7	18,818,715 (GRCm38)	missense	probably damaging	1.00
R7268:Psg17	UTSW	7	18,814,661 (GRCm38)	missense	possibly damaging	0.64
R7384:Psg17	UTSW	7	18,818,660 (GRCm38)	missense	possibly damaging	0.67
R7544:Psg17	UTSW	7	18,819,972 (GRCm38)	missense	probably benign	0.25
R7634:Psg17	UTSW	7	18,814,491 (GRCm38)	missense	probably damaging	1.00
R8716:Psg17	UTSW	7	18,821,385 (GRCm38)	missense	probably benign	0.30
R8755:Psg17	UTSW	7	18,816,911 (GRCm38)	missense	possibly damaging	0.64
R9105:Psg17	UTSW	7	18,821,408 (GRCm38)	missense	probably benign	0.04
R9145:Psg17	UTSW	7	18,819,926 (GRCm38)	missense	probably benign	0.01
R9296:Psg17	UTSW	7	18,820,066 (GRCm38)	missense	probably benign	0.10
Z1088:Psg17	UTSW	7	18,816,910 (GRCm38)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- TTCTCAGTGACATCCTGGAGCAG -3'
(R):5'- TAGATACACCCACAGGCCTG -3'

Sequencing Primer
(F):5'- CAGGGATCCATTGGTATACACTGTC -3'
(R):5'- GTTTAGGCTGAGTGAAGAATCCATC -3'

Posted On

2019-10-17