Mutagenetix > Incidental Mutation

Incidental Mutation 'R7555:Snx29'

584731

Institutional Source

Beutler Lab

Gene Symbol

Snx29

Ensembl Gene

ENSMUSG00000071669

Gene Name

sorting nexin 29

Synonyms

4933437K13Rik, LOC381035, LOC385605, Gm11170, Rundc2a

MMRRC Submission

045623-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7555 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

11322908-11755472 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 11400942 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Threonine at position 214 (M214T)

Ref Sequence

ENSEMBL: ENSMUSP00000138025 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000096273] [ENSMUST00000115814] [ENSMUST00000180792]

AlphaFold

Q9D3S3

Predicted Effect

probably benign
Transcript: ENSMUST00000096273

SMART Domains

Protein: ENSMUSP00000093993
Gene: ENSMUSG00000071669

Domain	Start	End	E-Value	Type
low complexity region	103	120	N/A	INTRINSIC
coiled coil region	125	206	N/A	INTRINSIC
PX	319	422	3.13e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115814
AA Change: M214T

PolyPhen 2 Score 0.023 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000111481
Gene: ENSMUSG00000071669
AA Change: M214T

Domain	Start	End	E-Value	Type
low complexity region	64	74	N/A	INTRINSIC
RUN	115	178	7.89e-26	SMART
internal_repeat_1	192	211	2.98e-5	PROSPERO
internal_repeat_1	203	222	2.98e-5	PROSPERO
low complexity region	252	262	N/A	INTRINSIC
low complexity region	270	275	N/A	INTRINSIC
low complexity region	314	323	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000180792
AA Change: M214T

PolyPhen 2 Score 0.023 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000138025
Gene: ENSMUSG00000071669
AA Change: M214T

Domain	Start	End	E-Value	Type
low complexity region	64	74	N/A	INTRINSIC
RUN	115	178	7.89e-26	SMART
internal_repeat_1	192	211	2.63e-5	PROSPERO
internal_repeat_1	203	222	2.63e-5	PROSPERO
low complexity region	252	262	N/A	INTRINSIC
low complexity region	270	275	N/A	INTRINSIC
low complexity region	314	323	N/A	INTRINSIC
low complexity region	445	462	N/A	INTRINSIC
coiled coil region	467	548	N/A	INTRINSIC
PX	661	764	3.13e-9	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (83/83)

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9430007A20Rik	T	A	4: 144,522,354	I97N	probably damaging	Het
Acvrl1	A	G	15: 101,143,473	H502R	probably benign	Het
Adgrf4	T	C	17: 42,672,603	S63G	probably benign	Het
Agbl2	C	A	2: 90,791,555	L129I	probably damaging	Het
Ankrd11	C	A	8: 122,887,406	A2542S	probably damaging	Het
Armc9	A	G	1: 86,275,678	K818R	probably damaging	Het
Arsj	T	A	3: 126,438,236	C210*	probably null	Het
Aspscr1	C	T	11: 120,673,100	A11V	unknown	Het
Bicc1	G	T	10: 70,956,291	Q296K	possibly damaging	Het
Borcs5	A	C	6: 134,685,979	Q73P	probably benign	Het
Capn15	G	T	17: 25,963,432	D567E	probably damaging	Het
Catsperg1	A	C	7: 29,189,814	I866S	probably damaging	Het
Ccdc27	G	T	4: 154,041,817	H72N	unknown	Het
Ccser2	A	T	14: 36,879,500	M309K	possibly damaging	Het
Cd1d2	A	G	3: 86,987,101	S59G	probably benign	Het
Chml	G	A	1: 175,687,890	P155L	probably benign	Het
Csmd2	C	T	4: 128,452,458	P1504S		Het
Dcbld2	A	G	16: 58,448,718		probably null	Het
Ddx21	C	T	10: 62,598,243	E246K	probably benign	Het
Dhx29	C	T	13: 112,927,642		probably benign	Het
Dis3l	A	C	9: 64,311,937	Y570*	probably null	Het
Dnah14	T	A	1: 181,770,054	Y3623N	probably benign	Het
Dock8	A	G	19: 25,175,400	D1610G	probably damaging	Het
Dync1h1	T	C	12: 110,630,625	S1669P	probably benign	Het
Eif2ak4	T	A	2: 118,417,283	I267N	possibly damaging	Het
Ern2	A	T	7: 122,170,241	V854E	probably damaging	Het
Fuca2	G	A	10: 13,507,430		probably null	Het
Gbp10	G	A	5: 105,236,149		probably benign	Het
Gm1110	T	A	9: 26,893,628	T380S	probably benign	Het
Gm13128	T	C	4: 144,332,741	F341L	probably benign	Het
Gm5788	A	C	12: 87,494,735	K5N	unknown	Het
Gm6460	A	T	5: 11,597,612	N106Y	probably damaging	Het
Golga2	G	A	2: 32,288,166	R29H	probably benign	Het
Grik5	T	C	7: 25,060,597	E259G	probably benign	Het
Grm3	T	C	5: 9,570,000	T415A	probably benign	Het
Gtf3c1	A	G	7: 125,645,670	Y1731H	probably damaging	Het
Hectd2	T	C	19: 36,612,403	C643R	probably damaging	Het
Hgfac	T	C	5: 35,042,628	S118P	probably damaging	Het
Hmcn1	A	G	1: 150,604,874	V4517A	probably benign	Het
Hnrnpc	A	T	14: 52,075,153	L290*	probably null	Het
Homer3	A	G	8: 70,289,413	E108G	probably damaging	Het
Hsd17b3	G	T	13: 64,072,002	S141R	probably benign	Het
Hspa12b	C	T	2: 131,138,476	T105I	probably damaging	Het
Ifi202b	T	C	1: 173,972,221	I231M	probably damaging	Het
Inhba	T	A	13: 16,017,637	N114K	probably benign	Het
Kmt2b	C	A	7: 30,569,410	M2631I	possibly damaging	Het
Loxhd1	C	T	18: 77,395,365	T1214I	probably damaging	Het
Lrp1	G	T	10: 127,546,862	N3683K	probably damaging	Het
Lrrc8e	A	G	8: 4,234,363	K196R	probably benign	Het
Lrrn3	A	T	12: 41,452,911	M469K	probably benign	Het
Mafb	T	C	2: 160,365,829	E283G	probably damaging	Het
Mapt	C	A	11: 104,298,702	P182Q	probably benign	Het
Mmp14	G	T	14: 54,437,742	R277L	possibly damaging	Het
Mucl2	T	A	15: 103,897,445	N82I	probably benign	Het
Nsun6	T	A	2: 14,996,339	T469S	possibly damaging	Het
Olfr1076	A	C	2: 86,509,347	D296A	probably damaging	Het
Olfr1342	T	C	4: 118,689,642	D270G	possibly damaging	Het
Olfr507	G	C	7: 108,622,726	A305P	probably damaging	Het
Osbpl5	A	T	7: 143,694,933	F631I	possibly damaging	Het
Otud3	G	T	4: 138,901,885	D190E	possibly damaging	Het
Pcdhb6	A	T	18: 37,335,279	I418F	possibly damaging	Het
Per1	G	A	11: 69,106,513	R838H	probably damaging	Het
Per2	G	A	1: 91,435,135	P395S	probably damaging	Het
Per3	G	A	4: 151,018,058	Q583*	probably null	Het
Pkhd1l1	A	T	15: 44,550,761	H2808L	possibly damaging	Het
Ppfia2	A	G	10: 106,927,826	T1227A	probably benign	Het
Psg17	C	T	7: 18,817,094	D279N	probably benign	Het
Rnf167	A	G	11: 70,650,797	D235G	probably benign	Het
Rxfp3	A	G	15: 11,036,276	S337P	probably damaging	Het
Sall1	T	C	8: 89,033,158	D106G	possibly damaging	Het
Sema4f	A	G	6: 82,914,056	V590A	probably benign	Het
Setd1b	A	G	5: 123,157,757	D1102G	unknown	Het
Six2	C	A	17: 85,687,707	K82N	probably damaging	Het
Son	T	C	16: 91,658,922	L1519P	probably damaging	Het
Spin1	C	T	13: 51,149,049	S226L	probably benign	Het
Stxbp5l	T	C	16: 37,323,603	D131G	probably damaging	Het
Svep1	T	C	4: 58,069,422	Y2788C	probably damaging	Het
Tbl3	C	A	17: 24,701,976		probably null	Het
Themis	A	T	10: 28,781,702	I242L	possibly damaging	Het
Tmem203	G	A	2: 25,255,730	V21M	probably benign	Het
Trp53inp1	T	C	4: 11,169,750	C171R	probably benign	Het
Tsg101	A	G	7: 46,913,411	Y32H	probably damaging	Het
Tyw1	A	G	5: 130,274,706	D305G	probably damaging	Het
Vmn1r40	A	T	6: 89,715,044	Y281F	probably damaging	Het
Vmn2r105	T	A	17: 20,227,675	T296S	probably damaging	Het
Vmn2r13	T	C	5: 109,171,691		probably null	Het
Zfp933	A	G	4: 147,826,132	F336L	probably damaging	Het

Other mutations in Snx29

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00733:Snx29	APN	16	11,403,502 (GRCm38)	missense	probably damaging	0.97
IGL02207:Snx29	APN	16	11,738,352 (GRCm38)	missense	probably damaging	1.00
PIT1430001:Snx29	UTSW	16	11,403,624 (GRCm38)	missense	probably benign	0.00
PIT4810001:Snx29	UTSW	16	11,400,981 (GRCm38)	missense	probably damaging	1.00
R0240:Snx29	UTSW	16	11,660,553 (GRCm38)	missense	probably damaging	1.00
R0240:Snx29	UTSW	16	11,660,553 (GRCm38)	missense	probably damaging	1.00
R0276:Snx29	UTSW	16	11,738,373 (GRCm38)	missense	probably benign	0.01
R0506:Snx29	UTSW	16	11,395,303 (GRCm38)	missense	probably benign	0.15
R0621:Snx29	UTSW	16	11,405,787 (GRCm38)	splice site	probably null
R0975:Snx29	UTSW	16	11,347,871 (GRCm38)	missense	possibly damaging	0.66
R1225:Snx29	UTSW	16	11,420,686 (GRCm38)	intron	probably benign
R1406:Snx29	UTSW	16	11,399,793 (GRCm38)	missense	probably benign	0.38
R1406:Snx29	UTSW	16	11,399,793 (GRCm38)	missense	probably benign	0.38
R1452:Snx29	UTSW	16	11,631,471 (GRCm38)	missense	probably damaging	1.00
R1515:Snx29	UTSW	16	11,399,837 (GRCm38)	critical splice donor site	probably null
R1874:Snx29	UTSW	16	11,367,681 (GRCm38)	missense	probably benign	0.01
R1953:Snx29	UTSW	16	11,399,783 (GRCm38)	nonsense	probably null
R1978:Snx29	UTSW	16	11,367,724 (GRCm38)	missense	probably benign	0.23
R2054:Snx29	UTSW	16	11,631,492 (GRCm38)	missense	probably damaging	1.00
R2105:Snx29	UTSW	16	11,511,034 (GRCm38)	missense	possibly damaging	0.72
R2128:Snx29	UTSW	16	11,400,971 (GRCm38)	missense	probably damaging	0.98
R2152:Snx29	UTSW	16	11,400,843 (GRCm38)	missense	possibly damaging	0.95
R2912:Snx29	UTSW	16	11,447,453 (GRCm38)	missense	probably damaging	0.99
R2913:Snx29	UTSW	16	11,447,453 (GRCm38)	missense	probably damaging	0.99
R2914:Snx29	UTSW	16	11,447,453 (GRCm38)	missense	probably damaging	0.99
R4468:Snx29	UTSW	16	11,420,701 (GRCm38)	splice site	probably null
R4469:Snx29	UTSW	16	11,420,701 (GRCm38)	splice site	probably null
R4612:Snx29	UTSW	16	11,447,495 (GRCm38)	missense	probably damaging	0.99
R4744:Snx29	UTSW	16	11,349,909 (GRCm38)	nonsense	probably null
R4798:Snx29	UTSW	16	11,420,736 (GRCm38)	missense	probably damaging	1.00
R5000:Snx29	UTSW	16	11,403,507 (GRCm38)	missense	probably damaging	0.99
R5165:Snx29	UTSW	16	11,420,775 (GRCm38)	missense	probably damaging	0.98
R5207:Snx29	UTSW	16	11,738,363 (GRCm38)	missense	probably damaging	1.00
R5235:Snx29	UTSW	16	11,413,246 (GRCm38)	missense	possibly damaging	0.94
R5274:Snx29	UTSW	16	11,738,404 (GRCm38)	missense	probably damaging	1.00
R5277:Snx29	UTSW	16	11,399,824 (GRCm38)	missense	possibly damaging	0.82
R5462:Snx29	UTSW	16	11,511,012 (GRCm38)	missense	possibly damaging	0.89
R5655:Snx29	UTSW	16	11,755,321 (GRCm38)	missense	probably damaging	1.00
R6036:Snx29	UTSW	16	11,738,437 (GRCm38)	splice site	probably null
R6036:Snx29	UTSW	16	11,738,437 (GRCm38)	splice site	probably null
R6326:Snx29	UTSW	16	11,403,566 (GRCm38)	missense	probably benign
R6576:Snx29	UTSW	16	11,715,056 (GRCm38)	critical splice donor site	probably null
R7406:Snx29	UTSW	16	11,755,316 (GRCm38)	missense	probably damaging	1.00
R7552:Snx29	UTSW	16	11,420,785 (GRCm38)	critical splice donor site	probably null
R7736:Snx29	UTSW	16	11,367,724 (GRCm38)	missense	probably benign	0.23
R7962:Snx29	UTSW	16	11,413,357 (GRCm38)	critical splice donor site	probably null
R8101:Snx29	UTSW	16	11,571,716 (GRCm38)	missense	probably benign	0.16
R8415:Snx29	UTSW	16	11,447,427 (GRCm38)	missense	probably damaging	1.00
R8549:Snx29	UTSW	16	11,715,056 (GRCm38)	critical splice donor site	probably null
R9010:Snx29	UTSW	16	11,631,527 (GRCm38)	missense	probably benign	0.00
R9091:Snx29	UTSW	16	11,395,291 (GRCm38)	missense	probably benign	0.33
R9099:Snx29	UTSW	16	11,660,571 (GRCm38)	missense	probably damaging	1.00
R9176:Snx29	UTSW	16	11,418,864 (GRCm38)	missense	probably benign
R9258:Snx29	UTSW	16	11,714,935 (GRCm38)	missense	possibly damaging	0.78
R9270:Snx29	UTSW	16	11,395,291 (GRCm38)	missense	probably benign	0.33
R9672:Snx29	UTSW	16	11,660,651 (GRCm38)	missense	probably benign	0.00
R9778:Snx29	UTSW	16	11,405,745 (GRCm38)	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- GCTGAAGATGAGTTCTTGTCCTC -3'
(R):5'- AGTGACAGCATCAGGGGTTC -3'

Sequencing Primer
(F):5'- AAGATGAGTTCTTGTCCTCTTGTGTC -3'
(R):5'- AGCATCAGGGGTTCCTCTCAG -3'

Posted On

2019-10-17