Mutagenetix > Incidental Mutation

Incidental Mutation 'R7556:Ppp1r42'

584743

Institutional Source

Beutler Lab

Gene Symbol

Ppp1r42

Ensembl Gene

ENSMUSG00000025916

Gene Name

protein phosphatase 1, regulatory subunit 42

Synonyms

1700011J18Rik, 4930418G15Rik, Lrrc67

MMRRC Submission

045624-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7556 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

10038849-10079361 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 10065408 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Arginine at position 172 (H172R)

Ref Sequence

ENSEMBL: ENSMUSP00000027049 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027049] [ENSMUST00000124874] [ENSMUST00000130102] [ENSMUST00000176398]

AlphaFold

Q8R1Z4

Predicted Effect

probably benign
Transcript: ENSMUST00000027049
AA Change: H172R

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000027049
Gene: ENSMUSG00000025916
AA Change: H172R

Domain	Start	End	E-Value	Type
Pfam:LRR_8	50	106	2.5e-8	PFAM
Pfam:LRR_4	72	114	2.3e-11	PFAM
low complexity region	146	164	N/A	INTRINSIC
low complexity region	184	201	N/A	INTRINSIC
low complexity region	243	259	N/A	INTRINSIC
low complexity region	323	332	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000124874
AA Change: H172R

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000115309
Gene: ENSMUSG00000025916
AA Change: H172R

Domain	Start	End	E-Value	Type
Pfam:LRR_8	50	106	2e-8	PFAM
Pfam:LRR_6	71	94	5.9e-3	PFAM
Pfam:LRR_4	72	117	3.8e-11	PFAM
Pfam:LRR_8	72	128	1.3e-8	PFAM
Pfam:LRR_1	73	93	3.4e-3	PFAM
Pfam:LRR_6	145	172	2.2e-3	PFAM
low complexity region	184	201	N/A	INTRINSIC
low complexity region	243	259	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000130102

SMART Domains

Protein: ENSMUSP00000115030
Gene: ENSMUSG00000025916

Domain	Start	End	E-Value	Type
Pfam:LRR_6	49	68	4.4e-2	PFAM
Pfam:LRR_8	50	106	2.3e-8	PFAM
Pfam:LRR_6	71	95	6.8e-3	PFAM
Pfam:LRR_4	72	116	6.9e-11	PFAM
Pfam:LRR_8	72	128	1.5e-8	PFAM
Pfam:LRR_1	73	93	5.1e-3	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000176398

SMART Domains

Protein: ENSMUSP00000135276
Gene: ENSMUSG00000025916

Domain	Start	End	E-Value	Type
low complexity region	4	21	N/A	INTRINSIC
low complexity region	63	79	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene can interact with gamma-tubulin and PP1 phosphatase, a regulator of centrosome separation. The encoded protein is a positive regulator of PP1 phosphatase and thus plays a role in the control of centrosome integrity. [provided by RefSeq, Feb 2017]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931429L15Rik	C	T	9: 46,221,611 (GRCm39)	W11*	probably null	Het
A2ml1	A	G	6: 128,546,927 (GRCm39)	S401P	probably damaging	Het
Adamtsl1	T	A	4: 86,195,358 (GRCm39)	Y592N	probably benign	Het
Adh6b	C	T	3: 138,058,546 (GRCm39)	T76I	probably damaging	Het
Aebp2	C	A	6: 140,623,137 (GRCm39)	P503Q	probably benign	Het
Ankrd2	A	G	19: 42,028,839 (GRCm39)	D134G		Het
Atf7ip	T	C	6: 136,538,239 (GRCm39)	S491P	probably damaging	Het
Atp1a3	T	C	7: 24,680,991 (GRCm39)	D832G	probably benign	Het
Atrnl1	G	A	19: 57,643,278 (GRCm39)	V389I	probably benign	Het
Bahcc1	T	C	11: 120,178,589 (GRCm39)	S2383P	probably damaging	Het
Brd9	A	G	13: 74,092,886 (GRCm39)	D292G	possibly damaging	Het
Cacna1e	G	T	1: 154,348,419 (GRCm39)	Q781K	probably benign	Het
Ccdc9	T	C	7: 16,018,491 (GRCm39)		probably benign	Het
Cdc42ep4	C	G	11: 113,619,366 (GRCm39)	E342Q	probably damaging	Het
Celf3	C	T	3: 94,387,590 (GRCm39)	T54M	probably damaging	Het
Cenpn	T	C	8: 117,664,008 (GRCm39)	Y267H	probably damaging	Het
Chrnb4	T	C	9: 54,942,339 (GRCm39)	T312A	probably benign	Het
Clcn3	T	A	8: 61,382,521 (GRCm39)	T383S	probably damaging	Het
Cln3	T	C	7: 126,174,242 (GRCm39)	Q327R	probably damaging	Het
Cnep1r1	T	C	8: 88,851,761 (GRCm39)	L50P	probably damaging	Het
Cnot6	T	C	11: 49,566,144 (GRCm39)	N512S	probably benign	Het
Col7a1	T	A	9: 108,811,533 (GRCm39)		probably null	Het
Cryba4	C	T	5: 112,398,969 (GRCm39)	R25Q	probably damaging	Het
Dnah5	A	G	15: 28,290,389 (GRCm39)	I1260V	probably null	Het
Dock2	G	T	11: 34,611,778 (GRCm39)	T195K	probably benign	Het
Dpp9	A	T	17: 56,497,012 (GRCm39)	I740N	possibly damaging	Het
Fbxl21	A	T	13: 56,674,741 (GRCm39)	N31Y	probably benign	Het
Frat1	G	A	19: 41,818,959 (GRCm39)	R118Q	possibly damaging	Het
Gna11	A	G	10: 81,367,208 (GRCm39)	F228S		Het
Golgb1	A	T	16: 36,736,155 (GRCm39)	M1842L	probably benign	Het
Got1	A	T	19: 43,491,469 (GRCm39)	M327K	probably damaging	Het
H4c9	A	G	13: 22,225,414 (GRCm39)	I27T	probably damaging	Het
Hexa	T	A	9: 59,470,582 (GRCm39)	L468Q	probably damaging	Het
Ift57	G	A	16: 49,526,491 (GRCm39)	V178I	probably benign	Het
Kbtbd13	T	C	9: 65,298,757 (GRCm39)	T60A	probably benign	Het
Klk1b5	A	G	7: 43,496,649 (GRCm39)	T194A	probably damaging	Het
Krtap16-3	C	A	16: 88,759,666 (GRCm39)	G16C	unknown	Het
Lamb3	T	C	1: 193,014,757 (GRCm39)	S639P	probably benign	Het
Mapt	C	A	11: 104,189,528 (GRCm39)	P182Q	probably benign	Het
Mcf2l	A	G	8: 13,023,071 (GRCm39)	T86A	probably damaging	Het
Mecom	G	T	3: 30,041,220 (GRCm39)	H125N	probably benign	Het
Med18	T	C	4: 132,187,247 (GRCm39)	H84R	probably benign	Het
Muc2	A	G	7: 141,307,439 (GRCm39)	Y798C		Het
Mycbp	T	C	4: 123,799,060 (GRCm39)	Y17H	probably damaging	Het
Nacad	C	T	11: 6,551,272 (GRCm39)	V640M	possibly damaging	Het
Ncoa1	C	T	12: 4,320,794 (GRCm39)	V1092I	probably damaging	Het
Nomo1	A	G	7: 45,715,642 (GRCm39)	E696G	probably damaging	Het
Notch4	G	A	17: 34,794,444 (GRCm39)	C741Y	probably damaging	Het
Or10g7	A	G	9: 39,905,978 (GRCm39)	N291D	probably damaging	Het
Or6d12	C	T	6: 116,493,697 (GRCm39)	Q320*	probably null	Het
Osbpl10	C	A	9: 115,036,692 (GRCm39)	H229Q	probably damaging	Het
Pif1	A	T	9: 65,496,993 (GRCm39)		probably null	Het
Plk2	T	G	13: 110,533,122 (GRCm39)		probably null	Het
Ring1	A	G	17: 34,240,688 (GRCm39)	I363T	possibly damaging	Het
Rnf168	T	G	16: 32,117,863 (GRCm39)	Y475D	probably damaging	Het
Sbf2	T	A	7: 109,913,260 (GRCm39)	K1671N	probably benign	Het
Sema6d	A	G	2: 124,496,109 (GRCm39)	N51S	probably damaging	Het
Setx	C	A	2: 29,036,505 (GRCm39)	Q997K	possibly damaging	Het
Skint5	T	G	4: 113,425,162 (GRCm39)	Q1088P	unknown	Het
Slc22a27	T	C	19: 7,843,119 (GRCm39)	D528G	probably damaging	Het
Slc6a7	T	A	18: 61,140,514 (GRCm39)	K173*	probably null	Het
Smc2	T	C	4: 52,457,379 (GRCm39)	F380L	probably benign	Het
Spata31d1a	T	C	13: 59,849,798 (GRCm39)	M777V	probably benign	Het
Stkld1	A	T	2: 26,837,307 (GRCm39)	N319I	possibly damaging	Het
Tanc2	T	C	11: 105,799,857 (GRCm39)	V93A		Het
Tbx20	T	C	9: 24,661,573 (GRCm39)		probably null	Het
Trbv20	G	A	6: 41,165,715 (GRCm39)	V47I	probably benign	Het
Trip4	A	T	9: 65,782,155 (GRCm39)	C192*	probably null	Het
Tsbp1	A	T	17: 34,656,691 (GRCm39)	I103F	unknown	Het
Tulp2	A	G	7: 45,168,005 (GRCm39)		probably null	Het
Ush2a	C	A	1: 188,689,690 (GRCm39)	P5084Q	probably benign	Het
Virma	T	C	4: 11,518,927 (GRCm39)	Y675H	probably damaging	Het
Vmn2r102	T	A	17: 19,898,093 (GRCm39)	N369K	probably benign	Het
Vmn2r59	A	T	7: 41,695,233 (GRCm39)	M393K	probably damaging	Het
Vmn2r69	GAAAA	GAAAAA	7: 85,060,768 (GRCm39)		probably null	Het
Xpot	A	G	10: 121,449,411 (GRCm39)	S30P	probably benign	Het
Zfp947	T	C	17: 22,364,597 (GRCm39)	Y359C	probably benign	Het

Other mutations in Ppp1r42

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01469:Ppp1r42	APN	1	10,073,458 (GRCm39)	critical splice donor site	probably null
IGL02739:Ppp1r42	APN	1	10,039,078 (GRCm39)	missense	probably benign	0.34
G1patch:Ppp1r42	UTSW	1	10,069,732 (GRCm39)	missense	probably damaging	1.00
R0920:Ppp1r42	UTSW	1	10,069,750 (GRCm39)	missense	probably damaging	1.00
R1829:Ppp1r42	UTSW	1	10,070,311 (GRCm39)	missense	probably benign	0.00
R2151:Ppp1r42	UTSW	1	10,073,572 (GRCm39)	missense	probably benign	0.10
R2909:Ppp1r42	UTSW	1	10,073,637 (GRCm39)	intron	probably benign
R4828:Ppp1r42	UTSW	1	10,069,636 (GRCm39)	missense	probably benign
R4863:Ppp1r42	UTSW	1	10,073,611 (GRCm39)	intron	probably benign
R5384:Ppp1r42	UTSW	1	10,069,660 (GRCm39)	missense	probably damaging	1.00
R5394:Ppp1r42	UTSW	1	10,069,630 (GRCm39)	missense	probably damaging	1.00
R6725:Ppp1r42	UTSW	1	10,069,732 (GRCm39)	missense	probably damaging	1.00
R7343:Ppp1r42	UTSW	1	10,039,082 (GRCm39)	missense	probably benign
R8722:Ppp1r42	UTSW	1	10,055,894 (GRCm39)	missense	probably benign	0.15
R9477:Ppp1r42	UTSW	1	10,055,854 (GRCm39)	missense	probably damaging	1.00
R9612:Ppp1r42	UTSW	1	10,039,067 (GRCm39)	missense	possibly damaging	0.79
R9668:Ppp1r42	UTSW	1	10,073,563 (GRCm39)	missense	probably benign	0.42
R9752:Ppp1r42	UTSW	1	10,073,674 (GRCm39)	intron	probably benign
Z1177:Ppp1r42	UTSW	1	10,069,652 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGTGACGTATGAAGACCTTGGG -3'
(R):5'- ACCTGGGCTGATGCTTTGAAG -3'

Sequencing Primer
(F):5'- TGACGTATGAAGACCTTGGGTATAG -3'
(R):5'- GCTTTTAAAGACCTGAGACCTGAGTC -3'

Posted On

2019-10-17