Mutagenetix > Incidental Mutation

Incidental Mutation 'R7559:Slc35f4'

584976

Institutional Source

Beutler Lab

Gene Symbol

Slc35f4

Ensembl Gene

ENSMUSG00000021852

Gene Name

solute carrier family 35, member F4

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.181) question?

Stock #

R7559 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

49298519-49526046 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 49304275 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 341 (I341V)

Ref Sequence

ENSEMBL: ENSMUSP00000073972 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074368] [ENSMUST00000138884]

AlphaFold

Q8BZK4

Predicted Effect

probably benign
Transcript: ENSMUST00000074368
AA Change: I341V

PolyPhen 2 Score 0.032 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000073972
Gene: ENSMUSG00000021852
AA Change: I341V

Domain	Start	End	E-Value	Type
low complexity region	22	30	N/A	INTRINSIC
transmembrane domain	123	145	N/A	INTRINSIC
transmembrane domain	160	182	N/A	INTRINSIC
Pfam:SLC35F	216	435	7.6e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000138884
AA Change: I191V

PolyPhen 2 Score 0.104 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000119007
Gene: ENSMUSG00000021852
AA Change: I191V

Domain	Start	End	E-Value	Type
Pfam:EmrE	18	143	1e-12	PFAM
Pfam:EamA	57	135	8.4e-9	PFAM
Pfam:DUF914	68	314	4.8e-8	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

99% (68/69)

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adap1	C	A	5: 139,279,540	R206L	probably damaging	Het
Adcy3	A	G	12: 4,198,440	K501E	probably benign	Het
Agl	T	C	3: 116,752,115	D679G		Het
Ankrd10	A	T	8: 11,612,548	V395D	probably damaging	Het
Ano5	A	G	7: 51,574,888	I531V	probably damaging	Het
Apol9a	T	A	15: 77,404,561	H202L	possibly damaging	Het
Atp6v1c2	A	C	12: 17,301,214	I105M	probably benign	Het
Cfap57	C	T	4: 118,614,931	V84I	probably benign	Het
Coro1b	T	C	19: 4,150,221		probably null	Het
D930020B18Rik	A	G	10: 121,656,226		probably benign	Het
Dcst2	T	C	3: 89,368,714	F384S	possibly damaging	Het
Ddx39	T	A	8: 83,720,966	F147I	possibly damaging	Het
Drosha	A	G	15: 12,842,422	E393G	probably damaging	Het
Etfdh	T	C	3: 79,623,579	Y45C	probably damaging	Het
Fam20c	G	T	5: 138,793,199	E287D	possibly damaging	Het
Flnc	T	A	6: 29,459,010	D2463E	probably damaging	Het
Flt4	A	T	11: 49,644,371	I1209F	possibly damaging	Het
Foxp1	T	C	6: 98,945,560	D437G	unknown	Het
Fras1	T	C	5: 96,740,854	V2753A	possibly damaging	Het
Ftsj3	T	C	11: 106,252,987	D277G	possibly damaging	Het
Gad1	T	C	2: 70,563,912		probably null	Het
Gal3st2c	A	G	1: 94,009,353	Y340C	probably damaging	Het
Gbp9	A	G	5: 105,085,109	F226L	probably damaging	Het
Gm11992	C	T	11: 9,052,747	P37S	possibly damaging	Het
Gm19668	G	T	10: 77,798,738	C132*	probably null	Het
Hdac3	A	T	18: 37,945,516	F139I	possibly damaging	Het
Hectd4	A	G	5: 121,315,510		probably null	Het
Helz	T	A	11: 107,600,278	S162T	possibly damaging	Het
Hspb6	C	A	7: 30,554,287	S75Y	probably damaging	Het
Il17rb	T	A	14: 29,997,043	I361F	probably damaging	Het
Iqsec3	A	T	6: 121,387,780	V850D	probably damaging	Het
Knl1	A	G	2: 119,094,006	E1840G	possibly damaging	Het
Lamc3	A	G	2: 31,922,368	K939R	probably benign	Het
Lmo7	C	T	14: 101,887,226	R496*	probably null	Het
Lsm14a	A	T	7: 34,353,401	C374*	probably null	Het
Luc7l	T	C	17: 26,255,115	L49P	probably damaging	Het
Mdga2	A	C	12: 66,473,229	C988G	probably damaging	Het
Mtf1	T	C	4: 124,820,206	V136A	probably damaging	Het
Myo7b	T	A	18: 31,983,360	I1016F	probably benign	Het
Nadsyn1	C	A	7: 143,808,067	A306S	probably benign	Het
Naip5	T	C	13: 100,219,696	Q1137R	probably benign	Het
Naip5	G	T	13: 100,219,697	Q1137K	not run	Het
Nr4a1	T	C	15: 101,270,899	V272A	probably damaging	Het
Olfr504	C	T	7: 108,565,556	A80T	probably damaging	Het
Olfr538	T	A	7: 140,574,443	C97S	probably damaging	Het
Olfr654	C	A	7: 104,587,880	H25Q	probably damaging	Het
Opcml	A	T	9: 28,903,324	T291S	probably benign	Het
Osbp2	C	G	11: 3,712,493	K196N	probably damaging	Het
Otoa	T	C	7: 121,143,926	V792A	probably damaging	Het
Pcmtd1	A	G	1: 7,169,542	D245G	probably damaging	Het
Pcnx	T	C	12: 81,993,122	V1428A	unknown	Het
Pik3r4	A	G	9: 105,678,153	H1103R	probably benign	Het
Pjvk	C	T	2: 76,655,810	H185Y	probably benign	Het
Pkd1l3	T	C	8: 109,624,440	V639A	probably benign	Het
Pklr	T	C	3: 89,143,058	S405P	probably damaging	Het
Pla2g12a	T	A	3: 129,878,920	Y68N	probably damaging	Het
Proz	A	G	8: 13,063,455	H92R	probably benign	Het
Sec23ip	G	T	7: 128,777,350	V844F	possibly damaging	Het
Sema3f	A	G	9: 107,684,578	V520A	possibly damaging	Het
Serpinb12	A	G	1: 106,953,723	I197V	probably damaging	Het
Sim2	A	T	16: 94,109,359	I207F	possibly damaging	Het
Slc15a2	C	T	16: 36,751,897	V702I	probably benign	Het
Spam1	A	G	6: 24,800,453	Y397C	probably damaging	Het
Spire1	A	T	18: 67,501,117	M417K	probably benign	Het
Srcap	T	C	7: 127,530,550	S515P	unknown	Het
Tfrc	T	A	16: 32,621,417		probably null	Het
Topors	A	G	4: 40,261,401	S628P	unknown	Het
Trim71	T	C	9: 114,513,042	Y724C	probably damaging	Het
Ttn	C	T	2: 76,792,855	V15413I	probably damaging	Het
Vmn1r21	A	T	6: 57,844,242	N72K	probably damaging	Het
Vmn2r80	A	T	10: 79,194,625	M762L	probably benign	Het
Wdr62	A	G	7: 30,270,773	I203T	probably damaging	Het

Other mutations in Slc35f4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01511:Slc35f4	APN	14	49298877	missense	probably benign	0.15
IGL01640:Slc35f4	APN	14	49318768	missense	probably damaging	0.99
IGL01942:Slc35f4	APN	14	49525505	splice site	probably benign
IGL01990:Slc35f4	APN	14	49304169	critical splice donor site	probably null
IGL02097:Slc35f4	APN	14	49306246	missense	probably damaging	1.00
IGL02803:Slc35f4	APN	14	49304257	missense	probably benign	0.00
R0005:Slc35f4	UTSW	14	49322486	splice site	probably benign
R0238:Slc35f4	UTSW	14	49304256	missense	possibly damaging	0.78
R0238:Slc35f4	UTSW	14	49304256	missense	possibly damaging	0.78
R0239:Slc35f4	UTSW	14	49304256	missense	possibly damaging	0.78
R0239:Slc35f4	UTSW	14	49304256	missense	possibly damaging	0.78
R0764:Slc35f4	UTSW	14	49306339	splice site	probably benign
R1884:Slc35f4	UTSW	14	49313634	missense	probably damaging	1.00
R1916:Slc35f4	UTSW	14	49303923	intron	probably benign
R2047:Slc35f4	UTSW	14	49303572	intron	probably benign
R2239:Slc35f4	UTSW	14	49306203	critical splice donor site	probably null
R2380:Slc35f4	UTSW	14	49306203	critical splice donor site	probably null
R4273:Slc35f4	UTSW	14	49304301	missense	possibly damaging	0.81
R4420:Slc35f4	UTSW	14	49313577	unclassified	probably benign
R4425:Slc35f4	UTSW	14	49318850	missense	possibly damaging	0.85
R5261:Slc35f4	UTSW	14	49303489	intron	probably benign
R5398:Slc35f4	UTSW	14	49298847	missense	probably damaging	1.00
R5402:Slc35f4	UTSW	14	49318874	missense	probably damaging	1.00
R6310:Slc35f4	UTSW	14	49322457	missense	probably damaging	1.00
R6596:Slc35f4	UTSW	14	49525600	missense	probably damaging	1.00
R6729:Slc35f4	UTSW	14	49318960	missense	probably benign	0.16
R6864:Slc35f4	UTSW	14	49318853	missense	possibly damaging	0.55
R7427:Slc35f4	UTSW	14	49298898	missense	probably damaging	0.99
R7428:Slc35f4	UTSW	14	49298898	missense	probably damaging	0.99
R7596:Slc35f4	UTSW	14	49306209	missense	probably damaging	1.00
R7722:Slc35f4	UTSW	14	49306274	missense	probably benign	0.22
R8263:Slc35f4	UTSW	14	49313627	missense	probably damaging	1.00
R8525:Slc35f4	UTSW	14	49304224	missense	possibly damaging	0.56
R9198:Slc35f4	UTSW	14	49318920	missense	unknown
R9615:Slc35f4	UTSW	14	49318849	missense	probably benign	0.00
R9751:Slc35f4	UTSW	14	49298834	missense	possibly damaging	0.49
R9772:Slc35f4	UTSW	14	49313718	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCAGCAAGTGAAGTCATCGC -3'
(R):5'- AGGGCATTTTAATTCTTTGTCACCC -3'

Sequencing Primer
(F):5'- CGCACTATAACCATCTGTTCAAGTGG -3'
(R):5'- CAGATGACATGGAGCCTAAACTCTAG -3'

Posted On

2019-10-17