Mutagenetix > Incidental Mutation

Incidental Mutation 'R7565:Thnsl2'

585375

Institutional Source

Beutler Lab

Gene Symbol

Thnsl2

Ensembl Gene

ENSMUSG00000054474

Gene Name

threonine synthase-like 2 (bacterial)

Synonyms

TSH2

MMRRC Submission

045710-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.097) question?

Stock #

R7565 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

71128166-71144439 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 71141327 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 39 (D39G)

Ref Sequence

ENSEMBL: ENSMUSP00000124423 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074241] [ENSMUST00000160918]

AlphaFold

Q80W22

Predicted Effect

probably benign
Transcript: ENSMUST00000074241
AA Change: D39G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000073861
Gene: ENSMUSG00000054474
AA Change: D39G

Domain	Start	End	E-Value	Type
Pfam:Thr_synth_N	2	81	2.4e-27	PFAM
Pfam:PALP	93	415	9.6e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000160918
AA Change: D39G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000124423
Gene: ENSMUSG00000054474
AA Change: D39G

Domain	Start	End	E-Value	Type
Pfam:Thr_synth_N	2	81	1.1e-27	PFAM
Pfam:PALP	94	413	8.4e-17	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a threonine synthase-like protein. A similar enzyme in mouse can catalyze the degradation of O-phospho-homoserine to a-ketobutyrate, phosphate, and ammonia. This protein also has phospho-lyase activity on both gamma and beta phosphorylated substrates. In mouse an alternatively spliced form of this protein has been shown to act as a cytokine and can induce the production of the inflammatory cytokine IL6 in osteoblasts. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931408C20Rik	A	T	1: 26,685,270 (GRCm38)	N276K	probably benign	Het
9830107B12Rik	T	A	17: 48,145,579 (GRCm38)	Y63F	possibly damaging	Het
Abi1	A	T	2: 22,946,584 (GRCm38)	I421N	probably benign	Het
Ahnak	A	G	19: 9,016,156 (GRCm38)	I4935V	probably benign	Het
Atg12	A	C	18: 46,734,484 (GRCm38)	V131G	probably damaging	Het
BC028528	CTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTT	CTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTT	3: 95,888,136 (GRCm38)		probably benign	Het
BC028528	CACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGT	CACTGGTTCTGTGGTGACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGT	3: 95,888,138 (GRCm38)		probably benign	Het
BC028528	TTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGG	TTCTGTGGTCACTGGGTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGG	3: 95,888,144 (GRCm38)		probably benign	Het
Bcl3	C	T	7: 19,812,494 (GRCm38)	V139I	probably damaging	Het
Bloc1s4	T	A	5: 36,748,345 (GRCm38)	M101L	probably benign	Het
Bmp6	C	T	13: 38,346,257 (GRCm38)	Q109*	probably null	Het
Cabyr	C	T	18: 12,744,599 (GRCm38)	T28I	possibly damaging	Het
Catsper3	T	C	13: 55,784,725 (GRCm38)	S22P	probably benign	Het
Catsperg2	A	T	7: 29,712,981 (GRCm38)	C395S	probably null	Het
Cd101	T	C	3: 101,018,792 (GRCm38)	T208A	probably benign	Het
Chaf1a	A	G	17: 56,064,148 (GRCm38)	S678G	probably benign	Het
Chrna2	A	C	14: 66,151,035 (GRCm38)	I500L	probably benign	Het
Cln6	C	T	9: 62,850,757 (GRCm38)	T266I	possibly damaging	Het
Col17a1	T	A	19: 47,671,524 (GRCm38)	T330S	possibly damaging	Het
Cyp2d40	A	G	15: 82,760,774 (GRCm38)	V225A	unknown	Het
Dnah10	A	G	5: 124,799,031 (GRCm38)	N2645D	probably damaging	Het
Dph5	T	A	3: 115,892,797 (GRCm38)	V74D	probably benign	Het
Dthd1	A	T	5: 62,843,092 (GRCm38)	I586L	probably damaging	Het
Elane	G	A	10: 79,887,045 (GRCm38)	R95Q	probably benign	Het
Fbxw17	A	G	13: 50,433,362 (GRCm38)	T453A	probably damaging	Het
Fpr3	C	A	17: 17,970,965 (GRCm38)	T166K	probably damaging	Het
Fryl	A	G	5: 73,033,720 (GRCm38)	I2724T	probably benign	Het
Fsip2	C	T	2: 82,949,512 (GRCm38)	R201C	probably damaging	Het
Gm14496	T	A	2: 181,991,257 (GRCm38)	F11Y	possibly damaging	Het
Gm14496	A	G	2: 182,000,837 (GRCm38)	N767S	probably damaging	Het
Hyal4	T	A	6: 24,765,934 (GRCm38)	M429K	possibly damaging	Het
Itgad	A	T	7: 128,183,015 (GRCm38)	T208S	probably damaging	Het
Itpr3	T	G	17: 27,110,888 (GRCm38)	L1552R	probably benign	Het
Kcp	C	T	6: 29,499,187 (GRCm38)	C292Y	probably damaging	Het
Kdr	T	C	5: 75,948,843 (GRCm38)	K958R	probably damaging	Het
Klhl22	T	A	16: 17,789,284 (GRCm38)	W485R	probably damaging	Het
Ldhb	T	A	6: 142,492,519 (GRCm38)	I271F	possibly damaging	Het
Lmo7	A	G	14: 101,885,301 (GRCm38)	R309G	probably damaging	Het
Marco	C	A	1: 120,474,666 (GRCm38)	C517F	probably damaging	Het
Mpdz	G	A	4: 81,303,654 (GRCm38)	T1423I	probably benign	Het
Ncoa2	T	C	1: 13,148,376 (GRCm38)	S1410G	probably benign	Het
Ncor1	T	C	11: 62,401,265 (GRCm38)	N283S	probably damaging	Het
Nlrp14	T	A	7: 107,181,887 (GRCm38)	L97*	probably null	Het
Olfm3	T	G	3: 115,122,744 (GRCm38)	S442A	probably damaging	Het
Olfr116	T	C	17: 37,624,501 (GRCm38)	I45V	probably damaging	Het
Olfr1436	T	C	19: 12,298,848 (GRCm38)	T95A	probably benign	Het
Olfr693	T	C	7: 106,678,126 (GRCm38)	Y120C	probably damaging	Het
Olfr76	T	A	19: 12,120,011 (GRCm38)	S234C	probably benign	Het
Olfr796	A	G	10: 129,608,160 (GRCm38)	V107A	possibly damaging	Het
Pank4	G	A	4: 154,980,550 (GRCm38)	V769I	probably benign	Het
Pdgfrb	G	A	18: 61,083,264 (GRCm38)	D1065N	probably damaging	Het
Ppp1r12a	G	A	10: 108,268,640 (GRCm38)	S911N	probably benign	Het
Prdx6b	A	G	2: 80,292,990 (GRCm38)	T48A	probably damaging	Het
Pttg1ip	A	G	10: 77,597,036 (GRCm38)	K166E	probably damaging	Het
Rabgap1l	T	C	1: 160,251,417 (GRCm38)	D9G		Het
Rpl13a	C	T	7: 45,127,042 (GRCm38)	G69S	probably benign	Het
Rps6ka5	T	A	12: 100,616,083 (GRCm38)	I177F	probably damaging	Het
Rttn	C	A	18: 89,060,479 (GRCm38)	A1343E	probably damaging	Het
Ryr2	C	T	13: 11,560,653 (GRCm38)	V4820I	possibly damaging	Het
Slc12a7	A	G	13: 73,790,772 (GRCm38)	I223V	possibly damaging	Het
Slc9a3	G	A	13: 74,157,694 (GRCm38)	V277M	probably damaging	Het
Spata13	A	T	14: 60,751,849 (GRCm38)	Y988F	probably damaging	Het
Spo11	A	G	2: 172,992,071 (GRCm38)	I329V	possibly damaging	Het
Tcp11l2	A	T	10: 84,587,134 (GRCm38)	D63V	probably damaging	Het
Tdrd3	G	A	14: 87,506,593 (GRCm38)	W659*	probably null	Het
Thumpd1	A	T	7: 119,716,862 (GRCm38)	L288*	probably null	Het
Tram1l1	T	C	3: 124,321,907 (GRCm38)	Y239H	probably damaging	Het
Usp38	T	A	8: 80,981,972 (GRCm38)	E992D	probably damaging	Het
Usp45	A	G	4: 21,784,790 (GRCm38)	T159A	probably benign	Het
Vmn1r218	C	T	13: 23,136,660 (GRCm38)	T59I	probably benign	Het
Vmn2r70	T	C	7: 85,565,291 (GRCm38)	I218V	probably benign	Het
Xpr1	T	C	1: 155,307,742 (GRCm38)	I461V	probably benign	Het
Ydjc	T	C	16: 17,147,005 (GRCm38)	L8P	probably damaging	Het
Yme1l1	A	T	2: 23,160,220 (GRCm38)	N21I	possibly damaging	Het
Zfhx4	T	C	3: 5,390,366 (GRCm38)	L1140P	probably benign	Het

Other mutations in Thnsl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00417:Thnsl2	APN	6	71,131,900 (GRCm38)	missense	probably damaging	1.00
IGL00814:Thnsl2	APN	6	71,139,883 (GRCm38)	missense	probably damaging	1.00
IGL01139:Thnsl2	APN	6	71,138,734 (GRCm38)	missense	probably damaging	1.00
IGL01380:Thnsl2	APN	6	71,138,756 (GRCm38)	missense	probably benign
IGL01511:Thnsl2	APN	6	71,139,793 (GRCm38)	missense	probably benign	0.04
IGL02000:Thnsl2	APN	6	71,134,219 (GRCm38)	missense	probably damaging	1.00
IGL03157:Thnsl2	APN	6	71,131,946 (GRCm38)	missense	probably benign	0.00
R0372:Thnsl2	UTSW	6	71,139,790 (GRCm38)	missense	probably damaging	1.00
R0380:Thnsl2	UTSW	6	71,141,330 (GRCm38)	missense	probably damaging	1.00
R0521:Thnsl2	UTSW	6	71,134,259 (GRCm38)	missense	probably damaging	1.00
R0815:Thnsl2	UTSW	6	71,134,224 (GRCm38)	nonsense	probably null
R0863:Thnsl2	UTSW	6	71,134,224 (GRCm38)	nonsense	probably null
R1300:Thnsl2	UTSW	6	71,134,191 (GRCm38)	missense	probably damaging	1.00
R2867:Thnsl2	UTSW	6	71,131,961 (GRCm38)	missense	probably damaging	1.00
R2867:Thnsl2	UTSW	6	71,131,961 (GRCm38)	missense	probably damaging	1.00
R4767:Thnsl2	UTSW	6	71,134,295 (GRCm38)	missense	probably damaging	1.00
R5578:Thnsl2	UTSW	6	71,138,765 (GRCm38)	missense	probably benign	0.40
R5818:Thnsl2	UTSW	6	71,134,143 (GRCm38)	missense	probably benign	0.01
R6627:Thnsl2	UTSW	6	71,134,215 (GRCm38)	missense	possibly damaging	0.70
R6800:Thnsl2	UTSW	6	71,141,280 (GRCm38)	missense	probably benign	0.29
R7192:Thnsl2	UTSW	6	71,139,755 (GRCm38)	missense	probably benign	0.02
R7391:Thnsl2	UTSW	6	71,131,930 (GRCm38)	missense	probably damaging	1.00
R7516:Thnsl2	UTSW	6	71,132,006 (GRCm38)	nonsense	probably null
R7980:Thnsl2	UTSW	6	71,138,668 (GRCm38)	missense	probably damaging	1.00
R7988:Thnsl2	UTSW	6	71,141,319 (GRCm38)	missense	probably benign	0.38
R8170:Thnsl2	UTSW	6	71,129,333 (GRCm38)	missense	probably benign	0.05
R8917:Thnsl2	UTSW	6	71,139,943 (GRCm38)	missense	probably benign
R9547:Thnsl2	UTSW	6	71,139,826 (GRCm38)	missense	probably damaging	1.00
R9696:Thnsl2	UTSW	6	71,131,946 (GRCm38)	missense	possibly damaging	0.95
X0021:Thnsl2	UTSW	6	71,128,704 (GRCm38)	missense	probably benign	0.02
X0066:Thnsl2	UTSW	6	71,139,837 (GRCm38)	nonsense	probably null
Z1177:Thnsl2	UTSW	6	71,128,841 (GRCm38)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GAACTTGCAACTCAGGGAGG -3'
(R):5'- ATATCCCAGTGAGTGGTGGCTC -3'

Sequencing Primer
(F):5'- CTTGCAACTCAGGGAGGGAGTATG -3'
(R):5'- GTCAGAGGACTCCGTATACTTAGC -3'

Posted On

2019-10-17