Mutagenetix > Incidental Mutation

Incidental Mutation 'R7578:Garin2'

586599

Institutional Source

Beutler Lab

Gene Symbol

Garin2

Ensembl Gene

ENSMUSG00000056987

Gene Name

golgi associated RAB2 interactor 2

Synonyms

Fam71d, 4921509E07Rik, 4930516C23Rik

MMRRC Submission

045663-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.053) question?

Stock #

R7578 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

78738309-78781290 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to C at 78762275 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000077119 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000077968] [ENSMUST00000219507] [ENSMUST00000219551] [ENSMUST00000220101] [ENSMUST00000220396]

AlphaFold

D3YV92

Predicted Effect

probably null
Transcript: ENSMUST00000077968

SMART Domains

Protein: ENSMUSP00000077119
Gene: ENSMUSG00000056987

Domain	Start	End	E-Value	Type
low complexity region	1	13	N/A	INTRINSIC
Pfam:DUF3699	111	184	1.6e-25	PFAM
low complexity region	237	250	N/A	INTRINSIC
low complexity region	265	284	N/A	INTRINSIC
low complexity region	391	402	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000219507

Predicted Effect

probably null
Transcript: ENSMUST00000219551

Predicted Effect

probably benign
Transcript: ENSMUST00000220101

Predicted Effect

probably benign
Transcript: ENSMUST00000220212

Predicted Effect

probably benign
Transcript: ENSMUST00000220396

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

97% (66/68)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700001J03Rik	A	T	5: 146,120,343 (GRCm39)	V165E	probably damaging	Het
1700025G04Rik	T	G	1: 151,796,841 (GRCm39)	T75P	probably benign	Het
4930516K23Rik	T	C	7: 103,708,104 (GRCm39)	E235G	probably benign	Het
Adam15	A	G	3: 89,251,499 (GRCm39)	C449R	probably damaging	Het
Adam24	T	C	8: 41,133,294 (GRCm39)	V254A	probably benign	Het
Akap9	C	G	5: 4,018,745 (GRCm39)	H1109D	probably benign	Het
Aldh1a1	A	C	19: 20,595,366 (GRCm39)	R98S	probably damaging	Het
Alg9	A	G	9: 50,700,835 (GRCm39)	I202V	probably benign	Het
Anks1b	G	A	10: 89,885,789 (GRCm39)	E162K	probably damaging	Het
Atp6v1b2	A	G	8: 69,556,128 (GRCm39)	T268A	probably benign	Het
Atxn1	C	T	13: 45,720,834 (GRCm39)	V354I	probably benign	Het
B3galt1	A	G	2: 67,948,896 (GRCm39)	T204A	probably damaging	Het
Catsperb	T	A	12: 101,554,544 (GRCm39)	I746K	probably benign	Het
Cdh23	G	A	10: 60,243,186 (GRCm39)	T1063M	probably benign	Het
Cherp	G	A	8: 73,218,102 (GRCm39)	R543C		Het
Cldn20	A	G	17: 3,583,274 (GRCm39)	D149G	probably damaging	Het
Clk2	A	G	3: 89,083,807 (GRCm39)	Q474R	probably benign	Het
Cp	A	G	3: 20,043,262 (GRCm39)	T1017A	possibly damaging	Het
Cyp2c39	T	C	19: 39,499,400 (GRCm39)	L29P	probably damaging	Het
Ebf3	C	T	7: 136,915,261 (GRCm39)	V93M	probably damaging	Het
Eef1akmt1	T	A	14: 57,787,328 (GRCm39)	M183L	probably damaging	Het
Fhip1a	G	T	3: 85,573,205 (GRCm39)	L915I	probably damaging	Het
Filip1l	A	G	16: 57,333,645 (GRCm39)	E146G	probably damaging	Het
Fpr-rs3	T	C	17: 20,844,293 (GRCm39)	S283G	possibly damaging	Het
Fras1	A	T	5: 96,832,296 (GRCm39)	Y1543F	probably damaging	Het
Gbp10	G	A	5: 105,384,015 (GRCm39)		probably benign	Het
Gjd3	A	G	11: 98,873,301 (GRCm39)	V181A	probably damaging	Het
Gm49368	T	A	7: 127,711,430 (GRCm39)	C711*	probably null	Het
Gtf3c2	A	G	5: 31,330,341 (GRCm39)	S210P	probably benign	Het
Herc2	A	G	7: 55,784,548 (GRCm39)	Y1404C	probably benign	Het
Il22ra2	T	A	10: 19,507,372 (GRCm39)	D128E	probably benign	Het
Itgav	T	A	2: 83,578,219 (GRCm39)	D113E	probably benign	Het
Kcnd3	A	G	3: 105,366,933 (GRCm39)	M268V	probably benign	Het
Kirrel3	G	T	9: 34,850,408 (GRCm39)	G19V	probably damaging	Het
Klf17	T	G	4: 117,617,916 (GRCm39)	Y147S	possibly damaging	Het
Leng1	C	T	7: 3,668,382 (GRCm39)	R22H	probably damaging	Het
Lysmd4	T	A	7: 66,876,037 (GRCm39)	Y233*	probably null	Het
Lyzl6	A	G	11: 103,525,832 (GRCm39)	V96A	probably benign	Het
Mki67	T	C	7: 135,302,644 (GRCm39)	T797A	possibly damaging	Het
Nuf2	G	T	1: 169,332,097 (GRCm39)	H399Q	probably benign	Het
Nuggc	T	C	14: 65,885,623 (GRCm39)	V766A	probably damaging	Het
Oas1c	A	T	5: 120,940,244 (GRCm39)	D307E	probably damaging	Het
Odad2	A	T	18: 7,211,593 (GRCm39)	D760E	probably benign	Het
Or10aa3	T	A	1: 173,878,266 (GRCm39)	M109K	possibly damaging	Het
Or6c5b	T	C	10: 129,245,544 (GRCm39)	I103T	probably damaging	Het
P4ha3	T	C	7: 99,943,121 (GRCm39)	Y169H	probably benign	Het
Perm1	TGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCT	TGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCTGAGCCTGACACGGCTTTGTCTACACCCGCCTCT	4: 156,302,525 (GRCm39)		probably benign	Het
Pkhd1	T	C	1: 20,417,585 (GRCm39)	D2522G	probably damaging	Het
Prickle2	T	C	6: 92,388,271 (GRCm39)	D433G	probably benign	Het
Ptcd3	A	G	6: 71,885,691 (GRCm39)	S12P	probably benign	Het
Ptpn23	T	A	9: 110,216,676 (GRCm39)	Q1060L	probably benign	Het
Rai14	G	T	15: 10,574,914 (GRCm39)	N710K	probably benign	Het
Rai14	C	T	15: 10,593,189 (GRCm39)	G152R	probably damaging	Het
Rsf1	CGGC	CGGCGGCGGGGGC	7: 97,229,139 (GRCm39)		probably benign	Het
Satb2	A	G	1: 56,910,943 (GRCm39)	V234A	probably benign	Het
Scg2	T	C	1: 79,414,612 (GRCm39)	Q37R	probably damaging	Het
Slc35e3	A	T	10: 117,576,484 (GRCm39)	S230T	probably damaging	Het
Slc39a2	T	C	14: 52,132,873 (GRCm39)	V272A	probably damaging	Het
Smg7	T	A	1: 152,721,181 (GRCm39)	Y677F	probably damaging	Het
Spinkl	A	G	18: 44,301,213 (GRCm39)	Y42H	probably damaging	Het
Srsf6	T	C	2: 162,774,782 (GRCm39)	F102L	probably benign	Het
Sstr3	T	C	15: 78,424,717 (GRCm39)	E10G	probably benign	Het
Tekt3	A	T	11: 62,985,486 (GRCm39)	I431F	probably damaging	Het
Trio	C	T	15: 27,855,025 (GRCm39)	R778H	possibly damaging	Het
Ush2a	T	A	1: 188,282,110 (GRCm39)	V1875D	probably damaging	Het
Vmn2r29	A	C	7: 7,234,441 (GRCm39)	I815S	probably damaging	Het
Vmn2r78	A	T	7: 86,603,552 (GRCm39)	K577*	probably null	Het
Vps26c	A	C	16: 94,299,928 (GRCm39)	N275K	probably damaging	Het
Yes1	G	A	5: 32,802,430 (GRCm39)	R115Q	probably benign	Het

Other mutations in Garin2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02123:Garin2	APN	12	78,780,981 (GRCm39)	critical splice donor site	probably null
IGL02738:Garin2	APN	12	78,780,989 (GRCm39)	splice site	probably benign
R0760:Garin2	UTSW	12	78,761,927 (GRCm39)	missense	probably damaging	1.00
R1832:Garin2	UTSW	12	78,762,280 (GRCm39)	unclassified	probably benign
R1833:Garin2	UTSW	12	78,762,280 (GRCm39)	unclassified	probably benign
R4335:Garin2	UTSW	12	78,759,006 (GRCm39)	missense	possibly damaging	0.77
R4437:Garin2	UTSW	12	78,761,824 (GRCm39)	missense	probably damaging	1.00
R4850:Garin2	UTSW	12	78,761,927 (GRCm39)	missense	probably damaging	1.00
R5234:Garin2	UTSW	12	78,762,045 (GRCm39)	nonsense	probably null
R5445:Garin2	UTSW	12	78,761,890 (GRCm39)	missense	probably damaging	1.00
R5587:Garin2	UTSW	12	78,761,849 (GRCm39)	missense	probably damaging	0.99
R5965:Garin2	UTSW	12	78,757,080 (GRCm39)	missense	unknown
R5993:Garin2	UTSW	12	78,762,210 (GRCm39)	missense	probably damaging	0.98
R6644:Garin2	UTSW	12	78,762,060 (GRCm39)	missense	probably damaging	1.00
R6660:Garin2	UTSW	12	78,762,131 (GRCm39)	missense	possibly damaging	0.88
R7052:Garin2	UTSW	12	78,766,176 (GRCm39)	missense	probably benign	0.00
R7098:Garin2	UTSW	12	78,766,408 (GRCm39)	critical splice donor site	probably null
R7189:Garin2	UTSW	12	78,758,982 (GRCm39)	missense	probably benign	0.22
R7305:Garin2	UTSW	12	78,761,809 (GRCm39)	missense	possibly damaging	0.85
R7604:Garin2	UTSW	12	78,761,788 (GRCm39)	missense	probably damaging	1.00
R7720:Garin2	UTSW	12	78,758,907 (GRCm39)	missense	probably damaging	1.00
R7786:Garin2	UTSW	12	78,766,403 (GRCm39)	missense	probably benign	0.18
R8008:Garin2	UTSW	12	78,761,817 (GRCm39)	missense	probably benign	0.33
R8680:Garin2	UTSW	12	78,762,057 (GRCm39)	unclassified	probably benign
R8683:Garin2	UTSW	12	78,762,057 (GRCm39)	unclassified	probably benign
R8792:Garin2	UTSW	12	78,761,924 (GRCm39)	missense	probably damaging	1.00
R9026:Garin2	UTSW	12	78,757,097 (GRCm39)	missense	probably benign	0.00
R9112:Garin2	UTSW	12	78,757,202 (GRCm39)	critical splice donor site	probably null
R9290:Garin2	UTSW	12	78,759,028 (GRCm39)	missense	possibly damaging	0.94
R9620:Garin2	UTSW	12	78,762,077 (GRCm39)	missense	probably damaging	1.00
U24488:Garin2	UTSW	12	78,761,811 (GRCm39)	missense	probably damaging	1.00
Z1190:Garin2	UTSW	12	78,758,994 (GRCm39)	missense	possibly damaging	0.67

Predicted Primers

PCR Primer
(F):5'- ACTGATGTCACCGATATGCTG -3'
(R):5'- GCTGCTTCTGATACTGGAAGG -3'

Sequencing Primer
(F):5'- GATGTCACCGATATGCTGGACAAC -3'
(R):5'- ACTGGAAGGATGGTCACTATTTCAG -3'

Posted On

2019-10-24