Incidental Mutation 'R7587:Smco1'
ID 587231
Institutional Source Beutler Lab
Gene Symbol Smco1
Ensembl Gene ENSMUSG00000046345
Gene Name single-pass membrane protein with coiled-coil domains 1
Synonyms 2310010M20Rik
MMRRC Submission 045712-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.077) question?
Stock # R7587 (G1)
Quality Score 225.009
Status Validated
Chromosome 16
Chromosomal Location 32090298-32093599 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 32092541 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Valine at position 71 (M71V)
Ref Sequence ENSEMBL: ENSMUSP00000090873 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000014218] [ENSMUST00000093183] [ENSMUST00000171474]
AlphaFold Q8CEZ1
Predicted Effect probably benign
Transcript: ENSMUST00000014218
SMART Domains Protein: ENSMUSP00000014218
Gene: ENSMUSG00000014074

DomainStartEndE-ValueType
RING 16 54 8.23e-6 SMART
coiled coil region 114 184 N/A INTRINSIC
low complexity region 208 221 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000093183
AA Change: M71V

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
SMART Domains Protein: ENSMUSP00000090873
Gene: ENSMUSG00000046345
AA Change: M71V

DomainStartEndE-ValueType
Pfam:DUF4547 19 214 5e-120 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000171474
SMART Domains Protein: ENSMUSP00000126484
Gene: ENSMUSG00000014074

DomainStartEndE-ValueType
RING 18 56 8.23e-6 SMART
coiled coil region 116 186 N/A INTRINSIC
low complexity region 210 223 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.5%
Validation Efficiency 100% (63/63)
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Agl T C 3: 116,585,736 (GRCm39) T131A probably damaging Het
Asah1 A T 8: 41,827,578 (GRCm39) V15D probably benign Het
Asic1 A C 15: 99,593,471 (GRCm39) Q276P probably damaging Het
Atl2 A T 17: 80,172,496 (GRCm39) V158E probably benign Het
Atrn T A 2: 130,822,034 (GRCm39) I909N probably damaging Het
BC034090 A G 1: 155,093,232 (GRCm39) V742A probably damaging Het
Capzb T A 4: 138,989,334 (GRCm39) D85E possibly damaging Het
Cdh20 T C 1: 104,869,004 (GRCm39) F165S probably damaging Het
Cfap44 A G 16: 44,224,469 (GRCm39) E59G probably benign Het
Clpsl2 G A 17: 28,768,515 (GRCm39) V10I probably benign Het
D630003M21Rik T C 2: 158,038,308 (GRCm39) Y1046C probably benign Het
D630003M21Rik T A 2: 158,042,976 (GRCm39) S855C probably damaging Het
D6Wsu163e A G 6: 126,932,859 (GRCm39) I361V probably benign Het
Dchs2 A G 3: 83,211,822 (GRCm39) I1874V probably benign Het
Dennd2a T G 6: 39,460,069 (GRCm39) K679Q probably damaging Het
Dio2 A G 12: 90,696,334 (GRCm39) V218A probably benign Het
Gpr107 A T 2: 31,058,838 (GRCm39) K109N probably benign Het
Gpr108 C T 17: 57,543,732 (GRCm39) R448Q probably damaging Het
Gucy2c A G 6: 136,681,288 (GRCm39) V932A probably damaging Het
Kcnj8 T C 6: 142,512,065 (GRCm39) T181A probably damaging Het
Kdm3b A G 18: 34,930,080 (GRCm39) probably null Het
Lipc A G 9: 70,726,206 (GRCm39) Y168H probably damaging Het
Lipi C T 16: 75,347,103 (GRCm39) V439M probably benign Het
Lpp A T 16: 24,581,029 (GRCm39) probably null Het
Lrp1b T G 2: 40,620,729 (GRCm39) D3583A Het
Ltbr T C 6: 125,289,315 (GRCm39) T165A probably benign Het
Mroh3 A G 1: 136,118,736 (GRCm39) I527T probably benign Het
Mylk A G 16: 34,742,887 (GRCm39) E1133G probably benign Het
Nat3 T C 8: 68,000,226 (GRCm39) I35T probably damaging Het
Ncbp3 T C 11: 72,957,591 (GRCm39) probably null Het
Nedd1 G A 10: 92,534,592 (GRCm39) T306M probably benign Het
Nexn T C 3: 151,952,815 (GRCm39) R316G probably benign Het
Nox4 A G 7: 86,966,510 (GRCm39) H207R probably damaging Het
Nsun6 T C 2: 15,044,636 (GRCm39) Q110R probably benign Het
Or1e1b-ps1 C T 11: 73,846,010 (GRCm39) Q165* probably null Het
Or52n2c C T 7: 104,574,263 (GRCm39) R236H probably benign Het
Or7g32 T A 9: 19,408,818 (GRCm39) V258E probably damaging Het
Pappa2 T C 1: 158,678,701 (GRCm39) D905G probably damaging Het
Pepd T C 7: 34,668,965 (GRCm39) L195S probably damaging Het
Pms1 A G 1: 53,246,475 (GRCm39) S355P probably benign Het
Pop1 A T 15: 34,502,559 (GRCm39) K82M probably damaging Het
Ppp1r9b T A 11: 94,892,766 (GRCm39) D655E possibly damaging Het
Ppt2 A G 17: 34,845,777 (GRCm39) probably null Het
Pramel57 A G 5: 95,669,270 (GRCm39) T100A probably damaging Het
Prss35 T A 9: 86,637,427 (GRCm39) C66S probably damaging Het
Rfc3 A T 5: 151,574,616 (GRCm39) M1K probably null Het
Rffl T C 11: 82,700,974 (GRCm39) D284G probably damaging Het
Robo3 T C 9: 37,340,942 (GRCm39) D110G probably damaging Het
Rtel1 G A 2: 180,964,108 (GRCm39) V36M probably damaging Het
Slc1a7 T A 4: 107,867,683 (GRCm39) I457K possibly damaging Het
Snrnp200 G A 2: 127,069,822 (GRCm39) S989N probably damaging Het
Spef2 T A 15: 9,713,305 (GRCm39) I356F probably damaging Het
Stk24 C T 14: 121,539,699 (GRCm39) A166T probably damaging Het
Tada2b T C 5: 36,634,111 (GRCm39) I156V probably benign Het
Tasor2 T C 13: 3,618,849 (GRCm39) K2251E possibly damaging Het
Tbce C T 13: 14,194,327 (GRCm39) V111M probably damaging Het
Tlnrd1 A G 7: 83,532,155 (GRCm39) L92P probably damaging Het
Tnr T A 1: 159,713,778 (GRCm39) D735E probably benign Het
Tram1 T C 1: 13,649,771 (GRCm39) H110R probably damaging Het
Ttll3 CAAAGTAA CAAAGTAAAGTAA 6: 113,376,118 (GRCm39) probably null Het
Unc5b C T 10: 60,618,899 (GRCm39) C81Y probably damaging Het
Vps13a G A 19: 16,681,153 (GRCm39) T1041M probably benign Het
Other mutations in Smco1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01015:Smco1 APN 16 32,092,887 (GRCm39) missense probably damaging 1.00
IGL01704:Smco1 APN 16 32,092,704 (GRCm39) missense probably benign 0.26
IGL02000:Smco1 APN 16 32,092,751 (GRCm39) missense possibly damaging 0.75
R0217:Smco1 UTSW 16 32,092,599 (GRCm39) missense possibly damaging 0.77
R0602:Smco1 UTSW 16 32,092,062 (GRCm39) missense probably damaging 0.98
R1794:Smco1 UTSW 16 32,092,950 (GRCm39) missense probably benign 0.03
R1913:Smco1 UTSW 16 32,092,700 (GRCm39) missense probably damaging 1.00
R1996:Smco1 UTSW 16 32,092,730 (GRCm39) missense probably benign 0.00
R1998:Smco1 UTSW 16 32,092,658 (GRCm39) missense probably damaging 1.00
R3801:Smco1 UTSW 16 32,092,716 (GRCm39) missense probably benign 0.00
R3802:Smco1 UTSW 16 32,092,716 (GRCm39) missense probably benign 0.00
R3915:Smco1 UTSW 16 32,092,583 (GRCm39) missense probably benign 0.01
R5194:Smco1 UTSW 16 32,092,592 (GRCm39) missense probably damaging 1.00
R5464:Smco1 UTSW 16 32,092,694 (GRCm39) missense probably damaging 1.00
R5850:Smco1 UTSW 16 32,092,674 (GRCm39) missense probably damaging 1.00
R6221:Smco1 UTSW 16 32,092,023 (GRCm39) missense probably benign 0.00
R6267:Smco1 UTSW 16 32,092,832 (GRCm39) missense probably benign 0.00
R6454:Smco1 UTSW 16 32,092,041 (GRCm39) missense possibly damaging 0.46
R7068:Smco1 UTSW 16 32,092,929 (GRCm39) missense probably benign 0.01
R7196:Smco1 UTSW 16 32,092,620 (GRCm39) missense probably damaging 1.00
R7227:Smco1 UTSW 16 32,092,833 (GRCm39) missense possibly damaging 0.93
R7517:Smco1 UTSW 16 32,092,785 (GRCm39) missense possibly damaging 0.88
R7923:Smco1 UTSW 16 32,092,865 (GRCm39) missense possibly damaging 0.58
R8247:Smco1 UTSW 16 32,092,557 (GRCm39) missense probably benign 0.06
R8684:Smco1 UTSW 16 32,092,841 (GRCm39) missense probably damaging 0.96
Z1088:Smco1 UTSW 16 32,092,033 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGAAGTTCCTGCTCCATGC -3'
(R):5'- AGAGTGCTGAGACATCCCTC -3'

Sequencing Primer
(F):5'- ATGCACAGCGCCCCCTATG -3'
(R):5'- GAGACATCCCTCTCCTGCAG -3'
Posted On 2019-10-24