Mutagenetix > Incidental Mutation

Incidental Mutation 'R7606:Rbm27'

588335

Institutional Source

Beutler Lab

Gene Symbol

Rbm27

Ensembl Gene

ENSMUSG00000024491

Gene Name

RNA binding motif protein 27

Synonyms

Psc1

MMRRC Submission

045676-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7606 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

42408418-42474607 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 42460578 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 842 (T842A)

Ref Sequence

ENSEMBL: ENSMUSP00000089540 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000046972] [ENSMUST00000091920]

AlphaFold

Q5SFM8

Predicted Effect

probably damaging
Transcript: ENSMUST00000046972
AA Change: T798A

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000041688
Gene: ENSMUSG00000024491
AA Change: T798A

Domain	Start	End	E-Value	Type
Pfam:PWI	7	77	1.4e-10	PFAM
low complexity region	78	105	N/A	INTRINSIC
low complexity region	123	139	N/A	INTRINSIC
low complexity region	144	158	N/A	INTRINSIC
low complexity region	163	188	N/A	INTRINSIC
low complexity region	213	235	N/A	INTRINSIC
low complexity region	255	268	N/A	INTRINSIC
Pfam:zf-CCCH	274	300	5.2e-7	PFAM
low complexity region	317	358	N/A	INTRINSIC
low complexity region	372	386	N/A	INTRINSIC
low complexity region	448	462	N/A	INTRINSIC
low complexity region	541	555	N/A	INTRINSIC
SCOP:d1l3ka2	598	638	1e-4	SMART
Blast:RRM	601	643	2e-11	BLAST
Blast:RRM_2	744	782	3e-6	BLAST
low complexity region	783	798	N/A	INTRINSIC
low complexity region	853	865	N/A	INTRINSIC
low complexity region	924	938	N/A	INTRINSIC
low complexity region	945	953	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000091920
AA Change: T842A

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000089540
Gene: ENSMUSG00000024491
AA Change: T842A

Domain	Start	End	E-Value	Type
Pfam:PWI	7	77	1.5e-10	PFAM
low complexity region	78	105	N/A	INTRINSIC
low complexity region	123	139	N/A	INTRINSIC
low complexity region	144	158	N/A	INTRINSIC
low complexity region	163	188	N/A	INTRINSIC
low complexity region	213	235	N/A	INTRINSIC
low complexity region	255	268	N/A	INTRINSIC
Pfam:zf-CCCH	274	300	5.5e-7	PFAM
low complexity region	317	358	N/A	INTRINSIC
low complexity region	372	386	N/A	INTRINSIC
low complexity region	486	500	N/A	INTRINSIC
RRM	546	615	7.94e-3	SMART
low complexity region	623	658	N/A	INTRINSIC
Blast:RRM_2	788	826	3e-6	BLAST
low complexity region	827	842	N/A	INTRINSIC
low complexity region	897	909	N/A	INTRINSIC
low complexity region	968	982	N/A	INTRINSIC
low complexity region	989	997	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (59/59)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadac	T	A	3: 59,943,456 (GRCm39)		probably null	Het
Adat1	T	C	8: 112,709,236 (GRCm39)	K196E	possibly damaging	Het
Aire	T	C	10: 77,873,767 (GRCm39)	D314G	probably damaging	Het
Atp11a	C	T	8: 12,894,427 (GRCm39)	T674I	probably damaging	Het
Atp8b1	T	C	18: 64,688,186 (GRCm39)	D644G	probably damaging	Het
Bag4	A	G	8: 26,259,333 (GRCm39)	S289P	probably damaging	Het
Bcat1	G	T	6: 144,994,358 (GRCm39)	H46Q	probably benign	Het
Btg4	A	G	9: 51,029,307 (GRCm39)	N164S	probably damaging	Het
Ccz1	G	A	5: 143,951,626 (GRCm39)	A2V	probably benign	Het
Cd209g	T	C	8: 4,186,839 (GRCm39)	L128P	probably damaging	Het
Col4a2	T	A	8: 11,493,571 (GRCm39)	M1380K	probably benign	Het
Cpox	T	C	16: 58,494,812 (GRCm39)	V283A	probably benign	Het
Dnah10	A	T	5: 124,894,776 (GRCm39)	D3504V	probably benign	Het
Eml1	A	T	12: 108,503,625 (GRCm39)	I741F	probably benign	Het
Fam171a2	A	G	11: 102,335,002 (GRCm39)	V45A	possibly damaging	Het
Fem1a	A	G	17: 56,563,946 (GRCm39)	D13G	probably damaging	Het
Fkbp14	A	G	6: 54,570,003 (GRCm39)	I9T	probably benign	Het
Golt1b	G	A	6: 142,338,068 (GRCm39)	G13D	probably damaging	Het
Heatr5b	T	C	17: 79,070,455 (GRCm39)	N1653D	probably benign	Het
Hrg	A	G	16: 22,769,873 (GRCm39)	M1V	probably null	Het
Itgb2	T	A	10: 77,391,995 (GRCm39)	I356N	probably damaging	Het
Kcnb2	A	G	1: 15,383,064 (GRCm39)	E130G	probably damaging	Het
Kpna2	A	T	11: 106,882,884 (GRCm39)	F124Y	probably damaging	Het
Lyst	T	C	13: 13,812,060 (GRCm39)	I824T	probably damaging	Het
Meis2	T	C	2: 115,893,801 (GRCm39)	H38R	possibly damaging	Het
Mknk1	T	G	4: 115,735,191 (GRCm39)	I353S	probably damaging	Het
Mrc1	T	A	2: 14,242,955 (GRCm39)	I27N	probably damaging	Het
Mup4	T	C	4: 59,958,568 (GRCm39)	T111A	probably damaging	Het
Myo1f	T	C	17: 33,795,424 (GRCm39)	V53A	probably damaging	Het
Neb	T	G	2: 52,116,456 (GRCm39)	E994A		Het
Nlrc5	T	C	8: 95,203,745 (GRCm39)	M615T	possibly damaging	Het
Nup88	T	C	11: 70,852,441 (GRCm39)	E218G	possibly damaging	Het
Or10g3b	A	T	14: 52,587,420 (GRCm39)	F28I	probably benign	Het
Or4c114	A	G	2: 88,905,641 (GRCm39)		probably benign	Het
Parp11	A	G	6: 127,447,723 (GRCm39)	D19G	probably benign	Het
Parp2	A	T	14: 51,057,487 (GRCm39)	T429S	probably damaging	Het
Pcdhb6	G	A	18: 37,468,659 (GRCm39)	E527K	probably damaging	Het
Pde8a	A	G	7: 80,982,715 (GRCm39)	Y778C	probably damaging	Het
Pea15a	T	C	1: 172,028,150 (GRCm39)		probably null	Het
Plcd3	A	G	11: 102,967,683 (GRCm39)	Y420H	probably damaging	Het
Ppp1ca	C	A	19: 4,243,088 (GRCm39)	S85R	possibly damaging	Het
Pth	A	C	7: 112,985,450 (GRCm39)	I13S	probably benign	Het
Rcbtb2	T	A	14: 73,419,806 (GRCm39)		probably null	Het
Rubcnl	C	T	14: 75,276,314 (GRCm39)	L323F	probably benign	Het
Ryr3	A	T	2: 112,475,590 (GRCm39)	Y4539*	probably null	Het
Scamp3	T	A	3: 89,088,525 (GRCm39)	F244I	probably damaging	Het
Sema4d	T	C	13: 51,877,658 (GRCm39)	D58G	probably benign	Het
Skor1	G	T	9: 63,052,664 (GRCm39)	A435E	probably damaging	Het
Slc35a4	A	G	18: 36,815,638 (GRCm39)	Y156C	probably benign	Het
Spryd7	T	C	14: 61,777,607 (GRCm39)	T158A	possibly damaging	Het
Srgap3	A	C	6: 112,716,337 (GRCm39)	I621S	probably benign	Het
Tbc1d31	A	G	15: 57,815,066 (GRCm39)	E581G	probably damaging	Het
Tcf4	C	T	18: 69,776,054 (GRCm39)	T318I	probably damaging	Het
Usf3	C	T	16: 44,039,306 (GRCm39)	T1262M	probably damaging	Het
Vcam1	T	C	3: 115,914,704 (GRCm39)	D316G	possibly damaging	Het
Vmn2r72	T	A	7: 85,400,362 (GRCm39)	E229V	possibly damaging	Het
Zfhx2	T	C	14: 55,304,120 (GRCm39)	E1288G	probably benign	Het

Other mutations in Rbm27

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01064:Rbm27	APN	18	42,452,879 (GRCm39)	missense	possibly damaging	0.82
IGL01630:Rbm27	APN	18	42,434,905 (GRCm39)	missense	probably damaging	1.00
IGL02045:Rbm27	APN	18	42,452,978 (GRCm39)	missense	possibly damaging	0.52
IGL03031:Rbm27	APN	18	42,466,464 (GRCm39)	critical splice donor site	probably null
IGL03085:Rbm27	APN	18	42,460,589 (GRCm39)	splice site	probably benign
IGL03249:Rbm27	APN	18	42,434,812 (GRCm39)	missense	probably damaging	0.99
IGL03372:Rbm27	APN	18	42,438,781 (GRCm39)	missense	probably damaging	0.99
messenger	UTSW	18	42,466,468 (GRCm39)	splice site	probably null
R0048:Rbm27	UTSW	18	42,431,529 (GRCm39)	missense	probably benign	0.02
R0048:Rbm27	UTSW	18	42,431,529 (GRCm39)	missense	probably benign	0.02
R0111:Rbm27	UTSW	18	42,438,737 (GRCm39)	splice site	probably benign
R0122:Rbm27	UTSW	18	42,447,033 (GRCm39)	intron	probably benign
R0707:Rbm27	UTSW	18	42,459,091 (GRCm39)	critical splice donor site	probably null
R1253:Rbm27	UTSW	18	42,434,839 (GRCm39)	missense	probably damaging	0.99
R1268:Rbm27	UTSW	18	42,466,367 (GRCm39)	missense	probably damaging	1.00
R1317:Rbm27	UTSW	18	42,457,116 (GRCm39)	splice site	probably benign
R1403:Rbm27	UTSW	18	42,450,746 (GRCm39)	missense	probably damaging	0.97
R1403:Rbm27	UTSW	18	42,450,746 (GRCm39)	missense	probably damaging	0.97
R2187:Rbm27	UTSW	18	42,459,022 (GRCm39)	missense	probably damaging	1.00
R2358:Rbm27	UTSW	18	42,425,177 (GRCm39)	splice site	probably benign
R3123:Rbm27	UTSW	18	42,460,230 (GRCm39)	missense	probably damaging	1.00
R3711:Rbm27	UTSW	18	42,425,177 (GRCm39)	splice site	probably benign
R3712:Rbm27	UTSW	18	42,425,177 (GRCm39)	splice site	probably benign
R4616:Rbm27	UTSW	18	42,434,840 (GRCm39)	missense	probably damaging	0.96
R4839:Rbm27	UTSW	18	42,460,510 (GRCm39)	missense	probably damaging	1.00
R5151:Rbm27	UTSW	18	42,471,509 (GRCm39)	missense	probably damaging	1.00
R5308:Rbm27	UTSW	18	42,460,275 (GRCm39)	missense	probably damaging	1.00
R5696:Rbm27	UTSW	18	42,450,731 (GRCm39)	missense	probably damaging	1.00
R5868:Rbm27	UTSW	18	42,433,450 (GRCm39)	missense	possibly damaging	0.86
R6058:Rbm27	UTSW	18	42,460,570 (GRCm39)	missense	probably damaging	1.00
R6477:Rbm27	UTSW	18	42,466,383 (GRCm39)	missense	probably damaging	1.00
R6499:Rbm27	UTSW	18	42,470,076 (GRCm39)	missense	probably damaging	1.00
R6658:Rbm27	UTSW	18	42,457,178 (GRCm39)	missense	probably damaging	1.00
R6700:Rbm27	UTSW	18	42,459,004 (GRCm39)	missense	probably damaging	1.00
R6784:Rbm27	UTSW	18	42,434,929 (GRCm39)	missense	probably benign	0.00
R6812:Rbm27	UTSW	18	42,466,468 (GRCm39)	splice site	probably null
R7162:Rbm27	UTSW	18	42,447,092 (GRCm39)	missense	unknown
R7904:Rbm27	UTSW	18	42,465,921 (GRCm39)	missense	probably damaging	1.00
R7969:Rbm27	UTSW	18	42,408,545 (GRCm39)	start gained	probably benign
R8177:Rbm27	UTSW	18	42,457,175 (GRCm39)	missense	probably damaging	1.00
R9052:Rbm27	UTSW	18	42,465,893 (GRCm39)	missense	probably damaging	1.00
R9091:Rbm27	UTSW	18	42,438,829 (GRCm39)	missense	probably benign	0.06
R9206:Rbm27	UTSW	18	42,447,163 (GRCm39)	nonsense	probably null
R9269:Rbm27	UTSW	18	42,460,572 (GRCm39)	missense	probably benign	0.02
R9270:Rbm27	UTSW	18	42,438,829 (GRCm39)	missense	probably benign	0.06
R9680:Rbm27	UTSW	18	42,455,186 (GRCm39)	missense	probably damaging	0.98
X0065:Rbm27	UTSW	18	42,432,385 (GRCm39)	missense	possibly damaging	0.70
Z1176:Rbm27	UTSW	18	42,466,299 (GRCm39)	frame shift	probably null
Z1177:Rbm27	UTSW	18	42,471,517 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CCTTTGCATTCTGGAATGGTC -3'
(R):5'- AGCCCAGCACATTTGTCCAC -3'

Sequencing Primer
(F):5'- GCCAAATATAGGCTTAGTTTTTCCTG -3'
(R):5'- AGCACATTTGTCCACGTAGG -3'

Posted On

2019-10-24