Mutagenetix > Incidental Mutation

Incidental Mutation 'R7610:Zscan18'

588546

Institutional Source

Beutler Lab

Gene Symbol

Zscan18

Ensembl Gene

ENSMUSG00000070822

Gene Name

zinc finger and SCAN domain containing 18

Synonyms

EG232875

MMRRC Submission

045679-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.070) question?

Stock #

R7610 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

12502017-12537562 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 12503237 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 774 (K774R)

Ref Sequence

ENSEMBL: ENSMUSP00000047088 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000046245] [ENSMUST00000210650] [ENSMUST00000211392]

AlphaFold

E9PUD6

Predicted Effect

probably damaging
Transcript: ENSMUST00000046245
AA Change: K774R

PolyPhen 2 Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000047088
Gene: ENSMUSG00000070822
AA Change: K774R

Domain	Start	End	E-Value	Type
low complexity region	10	21	N/A	INTRINSIC
low complexity region	30	45	N/A	INTRINSIC
low complexity region	72	102	N/A	INTRINSIC
low complexity region	118	132	N/A	INTRINSIC
low complexity region	134	154	N/A	INTRINSIC
internal_repeat_2	159	204	6.76e-5	PROSPERO
internal_repeat_1	197	221	2.66e-6	PROSPERO
low complexity region	225	256	N/A	INTRINSIC
low complexity region	262	310	N/A	INTRINSIC
low complexity region	312	335	N/A	INTRINSIC
internal_repeat_1	353	377	2.66e-6	PROSPERO
SCAN	397	509	1.16e-37	SMART
ZnF_C2H2	776	798	2.24e-3	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000210650
AA Change: K774R

PolyPhen 2 Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)

Predicted Effect

probably benign
Transcript: ENSMUST00000210891

Predicted Effect

probably damaging
Transcript: ENSMUST00000211392
AA Change: K774R

PolyPhen 2 Score 0.977 (Sensitivity: 0.76; Specificity: 0.96)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (51/51)

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acta2	G	A	19: 34,229,931 (GRCm39)	T8I	probably benign	Het
Adtrp	A	G	13: 41,969,670 (GRCm39)	F110L	probably benign	Het
Akap9	T	G	5: 4,007,677 (GRCm39)	D230E	possibly damaging	Het
Alg11	G	A	8: 22,555,147 (GRCm39)	R136H	probably damaging	Het
Ank3	A	T	10: 69,822,252 (GRCm39)	N307I		Het
Ankrd17	A	G	5: 90,380,222 (GRCm39)	S2489P	possibly damaging	Het
Asf1b	T	G	8: 84,691,678 (GRCm39)	I43S	probably damaging	Het
Cdc37l1	G	T	19: 28,985,132 (GRCm39)	G261W	possibly damaging	Het
Cpped1	C	A	16: 11,712,742 (GRCm39)		probably null	Het
Ctsk	T	C	3: 95,408,155 (GRCm39)	F4L	probably benign	Het
D130043K22Rik	A	T	13: 25,059,985 (GRCm39)	T619S	probably benign	Het
Ddx25	T	A	9: 35,465,893 (GRCm39)	L109F	possibly damaging	Het
Dhrs9	C	A	2: 69,223,291 (GRCm39)	A13D	unknown	Het
Epha7	C	T	4: 28,871,937 (GRCm39)	S422L	probably benign	Het
Fam228a	A	G	12: 4,781,423 (GRCm39)		probably null	Het
Fancm	T	C	12: 65,152,454 (GRCm39)	V970A	probably damaging	Het
Fcrl2	C	A	3: 87,160,004 (GRCm39)	V417F	probably damaging	Het
Fig4	C	A	10: 41,129,709 (GRCm39)	A504S	probably damaging	Het
Frmpd1	T	C	4: 45,279,098 (GRCm39)	S608P	probably damaging	Het
Ggta1	C	T	2: 35,304,230 (GRCm39)		probably null	Het
Grb10	T	C	11: 11,893,955 (GRCm39)	K377R	probably benign	Het
Hivep3	CGG	CG	4: 119,955,108 (GRCm39)	1141	probably null	Het
Klf14	A	G	6: 30,935,005 (GRCm39)	S210P	probably damaging	Het
Mcm3ap	A	G	10: 76,332,554 (GRCm39)		probably null	Het
Mgrn1	T	C	16: 4,752,097 (GRCm39)	*533Q	probably null	Het
Mtarc2	A	G	1: 184,551,483 (GRCm39)	Y318H	probably benign	Het
Notch1	A	T	2: 26,368,191 (GRCm39)	H598Q	probably benign	Het
Nt5el	T	A	13: 105,247,695 (GRCm39)	N338K	probably damaging	Het
Ntng1	A	G	3: 109,842,141 (GRCm39)	S211P	probably damaging	Het
Or13a21	A	T	7: 139,999,466 (GRCm39)	C73*	probably null	Het
Or8i2	A	G	2: 86,852,141 (GRCm39)	V249A	possibly damaging	Het
Pgm5	A	C	19: 24,812,120 (GRCm39)	N137K	probably damaging	Het
Plcb2	T	A	2: 118,550,240 (GRCm39)	N172I	possibly damaging	Het
Pramel26	A	T	4: 143,539,436 (GRCm39)	M19K	probably damaging	Het
Rab11fip1	G	A	8: 27,642,064 (GRCm39)	H912Y	probably benign	Het
Rgl1	A	G	1: 152,428,371 (GRCm39)	V251A	probably damaging	Het
Rgs6	T	C	12: 83,138,553 (GRCm39)	Y296H	probably damaging	Het
Rhpn1	A	G	15: 75,584,245 (GRCm39)	T446A	unknown	Het
Rtn3	A	G	19: 7,435,294 (GRCm39)	S233P	probably damaging	Het
Rwdd1	A	C	10: 33,877,134 (GRCm39)	D203E	probably benign	Het
Samd9l	A	G	6: 3,376,754 (GRCm39)	V169A	probably benign	Het
Slfn5	T	C	11: 82,852,310 (GRCm39)	L812P	probably damaging	Het
Smc1b	T	C	15: 84,955,021 (GRCm39)	D1077G	possibly damaging	Het
Snrnp48	A	G	13: 38,393,937 (GRCm39)	R81G	probably damaging	Het
Syt17	A	T	7: 118,033,682 (GRCm39)		probably null	Het
Tpsg1	G	T	17: 25,592,184 (GRCm39)	G86V	probably damaging	Het
Ttc3	T	C	16: 94,228,697 (GRCm39)	I757T	probably benign	Het
Urb1	CACTTAC	CAC	16: 90,569,461 (GRCm39)		probably benign	Het
Wdr54	C	T	6: 83,129,839 (GRCm39)	V305M	possibly damaging	Het
Xirp2	C	T	2: 67,356,306 (GRCm39)	T3689I	possibly damaging	Het

Other mutations in Zscan18

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01930:Zscan18	APN	7	12,509,275 (GRCm39)	unclassified	probably benign
IGL02152:Zscan18	APN	7	12,509,223 (GRCm39)	unclassified	probably benign
IGL02236:Zscan18	APN	7	12,503,251 (GRCm39)	missense	probably benign	0.02
IGL02591:Zscan18	APN	7	12,509,206 (GRCm39)	unclassified	probably benign
IGL02619:Zscan18	APN	7	12,508,793 (GRCm39)	unclassified	probably benign
IGL02711:Zscan18	APN	7	12,509,044 (GRCm39)	unclassified	probably benign
IGL03397:Zscan18	APN	7	12,507,488 (GRCm39)	missense	probably damaging	0.97
R0014:Zscan18	UTSW	7	12,503,344 (GRCm39)	missense	possibly damaging	0.48
R0465:Zscan18	UTSW	7	12,509,413 (GRCm39)	unclassified	probably benign
R0548:Zscan18	UTSW	7	12,508,103 (GRCm39)	missense	probably damaging	1.00
R1506:Zscan18	UTSW	7	12,508,129 (GRCm39)	missense	probably damaging	1.00
R1725:Zscan18	UTSW	7	12,504,784 (GRCm39)	missense	probably damaging	1.00
R2323:Zscan18	UTSW	7	12,509,386 (GRCm39)	unclassified	probably benign
R5034:Zscan18	UTSW	7	12,508,072 (GRCm39)	missense	probably damaging	1.00
R5180:Zscan18	UTSW	7	12,509,216 (GRCm39)	unclassified	probably benign
R5579:Zscan18	UTSW	7	12,509,308 (GRCm39)	unclassified	probably benign
R5635:Zscan18	UTSW	7	12,504,791 (GRCm39)	missense	probably benign	0.00
R5708:Zscan18	UTSW	7	12,508,383 (GRCm39)	missense	probably benign	0.01
R6088:Zscan18	UTSW	7	12,509,125 (GRCm39)	unclassified	probably benign
R6320:Zscan18	UTSW	7	12,509,147 (GRCm39)	unclassified	probably benign
R7048:Zscan18	UTSW	7	12,508,671 (GRCm39)	unclassified	probably benign
R7683:Zscan18	UTSW	7	12,503,532 (GRCm39)	nonsense	probably null
R8287:Zscan18	UTSW	7	12,509,298 (GRCm39)	missense	unknown
R8674:Zscan18	UTSW	7	12,504,827 (GRCm39)	splice site	probably benign
R8735:Zscan18	UTSW	7	12,503,625 (GRCm39)	missense	probably benign	0.16
R8928:Zscan18	UTSW	7	12,509,120 (GRCm39)	nonsense	probably null
R9028:Zscan18	UTSW	7	12,506,116 (GRCm39)	intron	probably benign
R9290:Zscan18	UTSW	7	12,508,054 (GRCm39)	missense	probably damaging	0.99
R9342:Zscan18	UTSW	7	12,505,612 (GRCm39)	missense	probably damaging	1.00
R9471:Zscan18	UTSW	7	12,508,343 (GRCm39)	missense	possibly damaging	0.70
R9522:Zscan18	UTSW	7	12,503,297 (GRCm39)	missense	possibly damaging	0.91
R9631:Zscan18	UTSW	7	12,505,657 (GRCm39)	missense	possibly damaging	0.90
RF055:Zscan18	UTSW	7	12,508,352 (GRCm39)	small deletion	probably benign
Z1088:Zscan18	UTSW	7	12,509,020 (GRCm39)	unclassified	probably benign
Z1088:Zscan18	UTSW	7	12,508,994 (GRCm39)	missense	probably benign	0.18

Predicted Primers

PCR Primer
(F):5'- CCACCAGTGAGTTTTGCTTC -3'
(R):5'- AAAGAGGCCCCATCCAGATG -3'

Sequencing Primer
(F):5'- TTCTGGCAGAGAAGGGCTC -3'
(R):5'- CCCATCCAGATGACGAGGATG -3'

Posted On

2019-10-24