Mutagenetix > Incidental Mutation

Incidental Mutation 'R7611:Hmg20b'

588613

Institutional Source

Beutler Lab

Gene Symbol

Hmg20b

Ensembl Gene

ENSMUSG00000020232

Gene Name

high mobility group 20B

Synonyms

BRCA2-associated factor 35, Hmgxb2, Hmgx2, Smarce1r, BRAF35

MMRRC Submission

045715-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.373) question?

Stock #

R7611 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

81181882-81186314 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to A at 81185432 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000128807 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020454] [ENSMUST00000105323] [ENSMUST00000105324] [ENSMUST00000122993] [ENSMUST00000154609] [ENSMUST00000167481]

AlphaFold

Q9Z104

Predicted Effect

probably benign
Transcript: ENSMUST00000020454

SMART Domains

Protein: ENSMUSP00000020454
Gene: ENSMUSG00000020232

Domain	Start	End	E-Value	Type
low complexity region	4	22	N/A	INTRINSIC
low complexity region	52	64	N/A	INTRINSIC
HMG	69	139	8.68e-22	SMART
coiled coil region	190	257	N/A	INTRINSIC
low complexity region	266	280	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000105323

SMART Domains

Protein: ENSMUSP00000100960
Gene: ENSMUSG00000020232

Domain	Start	End	E-Value	Type
low complexity region	4	22	N/A	INTRINSIC
low complexity region	52	64	N/A	INTRINSIC
HMG	69	139	8.68e-22	SMART
coiled coil region	190	257	N/A	INTRINSIC
low complexity region	266	280	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000105324

SMART Domains

Protein: ENSMUSP00000100961
Gene: ENSMUSG00000020232

Domain	Start	End	E-Value	Type
low complexity region	4	22	N/A	INTRINSIC
low complexity region	52	64	N/A	INTRINSIC
HMG	69	139	8.68e-22	SMART
coiled coil region	190	257	N/A	INTRINSIC
low complexity region	266	280	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000122993

SMART Domains

Protein: ENSMUSP00000137861
Gene: ENSMUSG00000020232

Domain	Start	End	E-Value	Type
Pfam:HMG_box	1	36	1.2e-7	PFAM
coiled coil region	88	155	N/A	INTRINSIC
low complexity region	164	178	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000141171

SMART Domains

Protein: ENSMUSP00000117322
Gene: ENSMUSG00000020232

Domain	Start	End	E-Value	Type
low complexity region	1	14	N/A	INTRINSIC
HMG	19	89	8.68e-22	SMART
coiled coil region	139	206	N/A	INTRINSIC
low complexity region	234	246	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154609

SMART Domains

Protein: ENSMUSP00000115459
Gene: ENSMUSG00000020232

Domain	Start	End	E-Value	Type
low complexity region	4	22	N/A	INTRINSIC
low complexity region	52	64	N/A	INTRINSIC
HMG	69	139	8.68e-22	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000167481

SMART Domains

Protein: ENSMUSP00000128807
Gene: ENSMUSG00000020232

Domain	Start	End	E-Value	Type
low complexity region	4	22	N/A	INTRINSIC
low complexity region	52	64	N/A	INTRINSIC
HMG	69	139	8.68e-22	SMART
coiled coil region	190	257	N/A	INTRINSIC
low complexity region	266	280	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acta2	G	A	19: 34,229,931 (GRCm39)	T8I	probably benign	Het
Adcy8	C	T	15: 64,792,882 (GRCm39)	G25S	probably benign	Het
Ahnak2	G	T	12: 112,751,749 (GRCm39)	D35E		Het
Birc6	T	C	17: 74,969,713 (GRCm39)	M4261T	probably damaging	Het
Caln1	T	G	5: 130,534,918 (GRCm39)	F45V	probably damaging	Het
Camta2	A	T	11: 70,572,372 (GRCm39)	I313N	possibly damaging	Het
Capns1	T	A	7: 29,889,539 (GRCm39)	E220V	probably damaging	Het
Carmil1	C	A	13: 24,197,315 (GRCm39)	V1374L	probably benign	Het
Casp2	T	G	6: 42,250,972 (GRCm39)	L290R	possibly damaging	Het
Cdkn2b	C	A	4: 89,228,980 (GRCm39)	V19L	probably benign	Het
Ces1c	T	C	8: 93,851,139 (GRCm39)	N162D	probably benign	Het
Cfap96	A	G	8: 46,423,488 (GRCm39)	Y75H	probably damaging	Het
Chd9	T	C	8: 91,763,017 (GRCm39)	S2281P	probably damaging	Het
Chst13	T	C	6: 90,285,999 (GRCm39)	D321G	probably damaging	Het
Ckap2l	G	T	2: 129,127,600 (GRCm39)	P193T	possibly damaging	Het
Clca4b	T	A	3: 144,627,757 (GRCm39)	T405S	probably benign	Het
Cmah	T	C	13: 24,619,630 (GRCm39)	V265A	probably benign	Het
Cyp3a11	A	T	5: 145,797,191 (GRCm39)	M396K	probably benign	Het
Ddr2	A	T	1: 169,825,727 (GRCm39)	M291K	possibly damaging	Het
Ddx43	T	A	9: 78,309,635 (GRCm39)	I145N	probably benign	Het
Ephb2	T	A	4: 136,388,212 (GRCm39)		probably null	Het
Fgfr1	A	T	8: 26,048,221 (GRCm39)	K106*	probably null	Het
Gpr6	A	G	10: 40,946,875 (GRCm39)	F236L	probably benign	Het
Grin2c	A	G	11: 115,143,511 (GRCm39)	S750P	probably damaging	Het
Hecw2	A	G	1: 53,952,459 (GRCm39)	S925P	probably damaging	Het
Hivep3	CGG	CG	4: 119,955,108 (GRCm39)	1141	probably null	Het
Kcnk10	T	A	12: 98,484,899 (GRCm39)	Y79F	probably damaging	Het
Lrrc30	A	T	17: 67,939,424 (GRCm39)	F52Y	probably damaging	Het
Lrriq1	T	C	10: 103,036,432 (GRCm39)	K907R	possibly damaging	Het
Mbd3	T	C	10: 80,231,352 (GRCm39)	D63G	probably damaging	Het
Mettl21a	C	T	1: 64,654,266 (GRCm39)	A84T	probably benign	Het
Mmp19	A	G	10: 128,634,857 (GRCm39)	D491G	probably benign	Het
Mug1	A	T	6: 121,852,387 (GRCm39)		probably null	Het
Myh1	A	T	11: 67,101,243 (GRCm39)	H673L	possibly damaging	Het
Nlrc5	T	C	8: 95,239,276 (GRCm39)		probably null	Het
Nme9	T	A	9: 99,352,843 (GRCm39)	S264R	probably benign	Het
Nup153	T	C	13: 46,840,798 (GRCm39)	T937A	probably benign	Het
Obsl1	T	C	1: 75,482,024 (GRCm39)	E282G	probably damaging	Het
Or1o3	A	G	17: 37,573,745 (GRCm39)	V270A	probably benign	Het
Or2w2	A	G	13: 21,758,488 (GRCm39)	V46A	probably benign	Het
Or4l15	C	A	14: 50,198,368 (GRCm39)	A54S	probably benign	Het
Or5an10	T	A	19: 12,276,242 (GRCm39)	M85L	probably damaging	Het
Or5b99	T	A	19: 12,976,431 (GRCm39)	I27N	possibly damaging	Het
Or5m5	T	A	2: 85,814,407 (GRCm39)	C74*	probably null	Het
Or8k30	T	A	2: 86,339,397 (GRCm39)	I198K	possibly damaging	Het
Pcdhga12	T	C	18: 37,901,478 (GRCm39)	F770S	possibly damaging	Het
Pfkp	T	A	13: 6,655,119 (GRCm39)		probably null	Het
Prr29	C	G	11: 106,267,158 (GRCm39)	H58D	probably damaging	Het
Ptprz1	T	A	6: 23,001,219 (GRCm39)	M1103K	probably benign	Het
Rigi	T	C	4: 40,225,651 (GRCm39)	E250G	probably damaging	Het
Rsph4a	C	T	10: 33,781,473 (GRCm39)	P108S	probably benign	Het
Setd1b	A	C	5: 123,290,657 (GRCm39)	M875L	unknown	Het
Slc15a2	A	G	16: 36,576,673 (GRCm39)	S485P	probably benign	Het
Smoc1	A	G	12: 81,226,444 (GRCm39)	D423G	probably damaging	Het
Spast	T	A	17: 74,676,198 (GRCm39)	V337D	probably damaging	Het
Spesp1	T	C	9: 62,179,987 (GRCm39)	K307R	possibly damaging	Het
Sulf1	A	G	1: 12,906,467 (GRCm39)	E503G	probably benign	Het
Susd6	T	C	12: 80,921,341 (GRCm39)	Y313H	probably damaging	Het
Them4	A	T	3: 94,238,865 (GRCm39)	D224V	possibly damaging	Het
Tpsg1	G	T	17: 25,592,184 (GRCm39)	G86V	probably damaging	Het
Tspear	A	T	10: 77,717,049 (GRCm39)	T575S	probably benign	Het
Usp21	A	T	1: 171,113,142 (GRCm39)	H211Q	probably benign	Het
Vmn1r189	T	C	13: 22,286,322 (GRCm39)	S172G	probably benign	Het
Vmn2r114	T	C	17: 23,515,944 (GRCm39)	S516G	probably damaging	Het
Vmn2r28	T	A	7: 5,484,255 (GRCm39)	R648S	probably benign	Het
Vmn2r6	C	A	3: 64,472,563 (GRCm39)	V53F	probably damaging	Het
Vmn2r76	A	G	7: 85,879,388 (GRCm39)	I304T	probably benign	Het
Vmn2r88	A	C	14: 51,651,454 (GRCm39)	Y256S		Het
Zfhx4	A	T	3: 5,468,831 (GRCm39)	K3021N	probably damaging	Het
Zfp647	T	C	15: 76,795,988 (GRCm39)	H224R	probably damaging	Het
Zfp865	A	G	7: 5,034,130 (GRCm39)	E705G	probably damaging	Het

Other mutations in Hmg20b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01611:Hmg20b	APN	10	81,183,309 (GRCm39)	missense	probably benign	0.44
IGL02751:Hmg20b	APN	10	81,182,385 (GRCm39)	splice site	probably benign
PIT4585001:Hmg20b	UTSW	10	81,184,789 (GRCm39)	missense	possibly damaging	0.81
R0903:Hmg20b	UTSW	10	81,184,329 (GRCm39)	critical splice donor site	probably null
R2337:Hmg20b	UTSW	10	81,184,347 (GRCm39)	missense	probably damaging	1.00
R2843:Hmg20b	UTSW	10	81,182,404 (GRCm39)	missense	probably benign	0.18
R4646:Hmg20b	UTSW	10	81,184,416 (GRCm39)	missense	probably damaging	0.99
R4647:Hmg20b	UTSW	10	81,184,416 (GRCm39)	missense	probably damaging	0.99
R4648:Hmg20b	UTSW	10	81,184,416 (GRCm39)	missense	probably damaging	0.99
R4850:Hmg20b	UTSW	10	81,182,761 (GRCm39)	missense	probably damaging	1.00
R6863:Hmg20b	UTSW	10	81,182,854 (GRCm39)	missense	probably damaging	1.00
R7567:Hmg20b	UTSW	10	81,182,493 (GRCm39)	missense	possibly damaging	0.95
R7881:Hmg20b	UTSW	10	81,182,442 (GRCm39)	missense	probably damaging	1.00
R8839:Hmg20b	UTSW	10	81,184,749 (GRCm39)	missense	probably damaging	1.00
R8921:Hmg20b	UTSW	10	81,184,821 (GRCm39)	missense	probably damaging	1.00
R9405:Hmg20b	UTSW	10	81,185,258 (GRCm39)	missense	probably benign
Z1088:Hmg20b	UTSW	10	81,182,407 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- CTTTTCAGATGGGGACTCACC -3'
(R):5'- GTACTCCCTGTAGAACTGCC -3'

Sequencing Primer
(F):5'- TCAGATGGGGACTCACCTCCTC -3'
(R):5'- TGTAGAACTGCCAAGACACCCTATG -3'

Posted On

2019-10-24