Mutagenetix > Incidental Mutation

Incidental Mutation 'R7612:Trim62'

588658

Institutional Source

Beutler Lab

Gene Symbol

Trim62

Ensembl Gene

ENSMUSG00000041000

Gene Name

tripartite motif-containing 62

Synonyms

6330414G21Rik, Dear1

MMRRC Submission

045680-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.178) question?

Stock #

R7612 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

128777837-128805119 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 128790677 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Arginine at position 158 (Q158R)

Ref Sequence

ENSEMBL: ENSMUSP00000039121 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035667] [ENSMUST00000147852]

AlphaFold

Q80V85

Predicted Effect

probably benign
Transcript: ENSMUST00000035667
AA Change: Q158R

PolyPhen 2 Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000039121
Gene: ENSMUSG00000041000
AA Change: Q158R

Domain	Start	End	E-Value	Type
RING	11	53	1.85e-8	SMART
Pfam:zf-B_box	88	128	4e-8	PFAM
low complexity region	133	147	N/A	INTRINSIC
PRY	294	347	2.07e-20	SMART
Pfam:SPRY	350	467	1.1e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000147852

SMART Domains

Protein: ENSMUSP00000123646
Gene: ENSMUSG00000041000

Domain	Start	End	E-Value	Type
RING	11	53	1.85e-8	SMART
Pfam:zf-B_box	88	128	1.9e-9	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

100% (51/51)

MGI Phenotype

PHENOTYPE: Mice heterozygous or homozygous for a targeted allele exhibit increased tumorigenesis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310057N15Rik	A	T	16: 88,570,496 (GRCm39)	Y181*	probably null	Het
Adgrf2	T	G	17: 43,025,271 (GRCm39)	K71T	possibly damaging	Het
Brca2	T	A	5: 150,464,076 (GRCm39)	M1280K	probably benign	Het
Card14	T	C	11: 119,224,405 (GRCm39)	S541P	possibly damaging	Het
Cd19	G	T	7: 126,013,496 (GRCm39)	Q98K	possibly damaging	Het
Ceacam5	T	A	7: 17,493,341 (GRCm39)	I788N	possibly damaging	Het
Cpne2	A	T	8: 95,284,048 (GRCm39)	I290L	probably benign	Het
Cpsf1	C	T	15: 76,481,209 (GRCm39)	V1216I	probably benign	Het
Csad	G	A	15: 102,097,357 (GRCm39)		probably benign	Het
Depdc7	T	A	2: 104,560,853 (GRCm39)	Q47L	probably benign	Het
Dnajc6	T	A	4: 101,455,123 (GRCm39)	S105T	probably benign	Het
Dsg4	C	A	18: 20,604,047 (GRCm39)	P838Q	probably damaging	Het
Efcab3	T	A	11: 104,999,647 (GRCm39)	Y179N	possibly damaging	Het
Egfr	A	T	11: 16,809,025 (GRCm39)	N73I	possibly damaging	Het
Eya2	T	C	2: 165,529,657 (GRCm39)		probably null	Het
Fubp1	A	G	3: 151,923,652 (GRCm39)	Q123R	possibly damaging	Het
Galns	A	G	8: 123,311,693 (GRCm39)	I439T	possibly damaging	Het
Gm57858	A	T	3: 36,079,506 (GRCm39)	S261R	possibly damaging	Het
Gsdmd	T	G	15: 75,736,803 (GRCm39)	L140R	probably damaging	Het
Hcrtr1	A	G	4: 130,029,478 (GRCm39)	V201A	possibly damaging	Het
Ildr2	T	A	1: 166,135,361 (GRCm39)	M371K	probably benign	Het
Kalrn	G	A	16: 34,134,582 (GRCm39)	T412I	possibly damaging	Het
Kdm5b	C	T	1: 134,552,656 (GRCm39)	Q1211*	probably null	Het
Loxhd1	T	C	18: 77,517,671 (GRCm39)	S1840P	possibly damaging	Het
Maml2	A	G	9: 13,617,781 (GRCm39)	M376V	probably benign	Het
Mgat4e	T	C	1: 134,469,745 (GRCm39)	T100A	probably damaging	Het
Myo18b	T	A	5: 113,013,168 (GRCm39)	T812S	possibly damaging	Het
Nanp	T	A	2: 150,881,158 (GRCm39)	E30V	probably null	Het
Or2w1b	G	T	13: 21,300,217 (GRCm39)	M118I	probably damaging	Het
Or4c107	T	G	2: 88,788,849 (GRCm39)	L13R	probably damaging	Het
Or5ac21	A	T	16: 59,123,990 (GRCm39)	H158L	probably damaging	Het
Parp3	T	A	9: 106,351,393 (GRCm39)	N241I	probably benign	Het
Piezo2	T	C	18: 63,175,610 (GRCm39)	N1924D	probably benign	Het
Pou1f1	A	G	16: 65,326,811 (GRCm39)	N137S	probably damaging	Het
Ptgdr	A	G	14: 45,096,094 (GRCm39)	M206T	probably damaging	Het
Ptprd	T	C	4: 76,004,696 (GRCm39)	T20A	probably benign	Het
Rexo1	G	C	10: 80,385,497 (GRCm39)	S520R	probably benign	Het
Sgip1	T	A	4: 102,727,005 (GRCm39)	S94T	probably benign	Het
Slc35e3	A	G	10: 117,576,785 (GRCm39)	V182A	probably benign	Het
Slfn2	A	G	11: 82,961,089 (GRCm39)	E356G	probably damaging	Het
Spry4	C	A	18: 38,722,982 (GRCm39)	K260N	probably damaging	Het
Sync	A	T	4: 129,187,375 (GRCm39)	M136L	probably benign	Het
Tm7sf2	A	G	19: 6,120,638 (GRCm39)	V425A	probably benign	Het
Trim21	T	A	7: 102,208,742 (GRCm39)	M326L	probably benign	Het
Tubgcp2	T	A	7: 139,580,964 (GRCm39)	K663M	probably damaging	Het
Uggt1	T	C	1: 36,202,316 (GRCm39)	I1094V	probably damaging	Het
Urb1	A	G	16: 90,594,798 (GRCm39)	S245P	probably damaging	Het
Vwa3a	A	T	7: 120,351,838 (GRCm39)	D34V	probably null	Het
Zbtb45	C	T	7: 12,741,326 (GRCm39)	A311T	possibly damaging	Het
Zfp655	T	C	5: 145,173,999 (GRCm39)	S135P	unknown	Het

Other mutations in Trim62

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01530:Trim62	APN	4	128,778,252 (GRCm39)	missense	probably benign	0.05
R0201:Trim62	UTSW	4	128,796,343 (GRCm39)	missense	probably benign
R0744:Trim62	UTSW	4	128,778,008 (GRCm39)	missense	probably damaging	1.00
R1619:Trim62	UTSW	4	128,803,281 (GRCm39)	missense	probably damaging	0.98
R1834:Trim62	UTSW	4	128,803,018 (GRCm39)	missense	possibly damaging	0.69
R5223:Trim62	UTSW	4	128,803,204 (GRCm39)	missense	probably damaging	1.00
R5494:Trim62	UTSW	4	128,778,999 (GRCm39)	missense	possibly damaging	0.96
R6909:Trim62	UTSW	4	128,778,021 (GRCm39)	missense	probably damaging	1.00
R6959:Trim62	UTSW	4	128,802,955 (GRCm39)	missense	probably damaging	1.00
R7507:Trim62	UTSW	4	128,790,664 (GRCm39)	missense	probably benign	0.01
R7544:Trim62	UTSW	4	128,796,346 (GRCm39)	missense	probably benign	0.04
R7624:Trim62	UTSW	4	128,777,471 (GRCm39)	start gained	probably benign
R7817:Trim62	UTSW	4	128,794,478 (GRCm39)	missense	probably benign
R8404:Trim62	UTSW	4	128,803,233 (GRCm39)	missense	probably benign	0.01
R8502:Trim62	UTSW	4	128,803,233 (GRCm39)	missense	probably benign	0.01
R8692:Trim62	UTSW	4	128,794,465 (GRCm39)	missense	possibly damaging	0.72
R9061:Trim62	UTSW	4	128,802,963 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACTCAATATGGTGGGTGAGC -3'
(R):5'- AGAGAAATGGCCCCACTCAG -3'

Sequencing Primer
(F):5'- GCTATGATGGGAGATGGACATTG -3'
(R):5'- CCACTCAGTGACATTGACATTGGG -3'

Posted On

2019-10-24