Mutagenetix > Incidental Mutation

Incidental Mutation 'R7615:Neo1'

588850

Institutional Source

Beutler Lab

Gene Symbol

Neo1

Ensembl Gene

ENSMUSG00000032340

Gene Name

neogenin

Synonyms

2610028H22Rik, D930014N22Rik, Igdcc2

MMRRC Submission

045683-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7615 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

58874687-59036441 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 58884503 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Threonine at position 1321 (S1321T)

Ref Sequence

ENSEMBL: ENSMUSP00000063656 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068664] [ENSMUST00000214547]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000068664
AA Change: S1321T

PolyPhen 2 Score 0.074 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000063656
Gene: ENSMUSG00000032340
AA Change: S1321T

Domain	Start	End	E-Value	Type
signal peptide	1	41	N/A	INTRINSIC
IGc2	76	147	9.49e-5	SMART
IGc2	175	239	4.43e-5	SMART
IGc2	272	338	6.15e-13	SMART
IGc2	364	428	7.76e-10	SMART
low complexity region	446	458	N/A	INTRINSIC
FN3	470	553	8.23e-12	SMART
FN3	570	649	1.78e-16	SMART
FN3	665	749	1.54e-11	SMART
FN3	770	849	5.27e-10	SMART
FN3	885	970	7.63e-7	SMART
FN3	986	1072	2.78e-9	SMART
transmembrane domain	1136	1158	N/A	INTRINSIC
Pfam:Neogenin_C	1189	1492	1.9e-122	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000214547
AA Change: S1294T

PolyPhen 2 Score 0.540 (Sensitivity: 0.88; Specificity: 0.90)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (101/101)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a cell surface protein that is a member of the immunoglobulin superfamily. The encoded protein consists of four N-terminal immunoglobulin-like domains, six fibronectin type III domains, a transmembrane domain and a C-terminal internal domain that shares homology with the tumor suppressor candidate gene DCC. This protein may be involved in cell growth and differentiation and in cell-cell adhesion. Defects in this gene are associated with cell proliferation in certain cancers. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Feb 2010]
PHENOTYPE: Mice homozygous for a gene trap allele display perinatal lethality and abnormal trigeminal nerve development. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 100 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931406B18Rik	T	C	7: 43,497,849 (GRCm38)	I320V	possibly damaging	Het
Adat2	A	G	10: 13,553,276 (GRCm38)	K4R	probably benign	Het
Adgb	G	A	10: 10,436,010 (GRCm38)	L226F	probably damaging	Het
Adgrb3	C	T	1: 25,098,897 (GRCm38)	V1192I	probably damaging	Het
Ahsa2	T	A	11: 23,496,750 (GRCm38)	N71I	possibly damaging	Het
Amigo2	T	G	15: 97,245,342 (GRCm38)	T400P	probably damaging	Het
Ankhd1	A	T	18: 36,656,773 (GRCm38)	Q466L		Het
Auh	T	C	13: 52,919,013 (GRCm38)	I111V	probably benign	Het
Brwd1	A	G	16: 96,033,839 (GRCm38)	F942L	probably damaging	Het
C1qtnf7	A	G	5: 43,616,144 (GRCm38)	N262D	probably damaging	Het
Cdh9	T	A	15: 16,856,230 (GRCm38)	S785R	probably damaging	Het
Celsr3	A	G	9: 108,837,652 (GRCm38)	T2046A	possibly damaging	Het
Cep170b	T	C	12: 112,744,665 (GRCm38)	V1493A	probably damaging	Het
Cep290	C	T	10: 100,492,681 (GRCm38)	R111W	probably benign	Het
Chd2	T	A	7: 73,441,642 (GRCm38)	H1617L	probably damaging	Het
Clnk	T	C	5: 38,706,698 (GRCm38)	D404G	probably damaging	Het
Col18a1	C	T	10: 77,067,005 (GRCm38)	G795D	probably damaging	Het
Csf3r	T	A	4: 126,037,656 (GRCm38)	Y477*	probably null	Het
Ddx58	T	A	4: 40,229,653 (GRCm38)	I89F	possibly damaging	Het
Dnah17	T	A	11: 118,110,547 (GRCm38)	K857*	probably null	Het
Dnah2	T	G	11: 69,435,304 (GRCm38)	I3674L	probably damaging	Het
Dnah6	A	C	6: 73,095,206 (GRCm38)	I2431S	possibly damaging	Het
Eml6	T	A	11: 29,802,501 (GRCm38)	I971F	possibly damaging	Het
Fam135b	A	T	15: 71,463,323 (GRCm38)	I674N	probably damaging	Het
Fancc	T	A	13: 63,317,558 (GRCm38)		probably null	Het
Gabrb2	A	C	11: 42,626,742 (GRCm38)	K464Q	probably benign	Het
Gbp4	T	A	5: 105,122,982 (GRCm38)	D261V	possibly damaging	Het
Gdf3	A	G	6: 122,606,916 (GRCm38)	V164A	probably benign	Het
Gm19410	A	G	8: 35,796,359 (GRCm38)	D978G	probably damaging	Het
Gm20730	C	T	6: 43,081,774 (GRCm38)	G35R	probably null	Het
Gm9733	A	G	3: 15,320,485 (GRCm38)	V119A	probably damaging	Het
Grin2b	G	A	6: 135,923,364 (GRCm38)	T173I	probably damaging	Het
Gtf3c3	A	T	1: 54,423,572 (GRCm38)	V344E	possibly damaging	Het
Hsd3b5	A	G	3: 98,630,104 (GRCm38)	I32T	probably damaging	Het
Ido1	G	C	8: 24,593,188 (GRCm38)	L74V	probably damaging	Het
Igkv1-88	T	A	6: 68,862,373 (GRCm38)	D85V	probably damaging	Het
Il22ra1	A	G	4: 135,737,459 (GRCm38)	I159V	probably benign	Het
Iqgap1	A	G	7: 80,751,346 (GRCm38)	V531A	probably benign	Het
Iqgap1	A	T	7: 80,730,100 (GRCm38)	F1175Y	probably damaging	Het
Itga1	T	A	13: 114,996,922 (GRCm38)	Q484L	probably null	Het
Itga11	A	T	9: 62,744,018 (GRCm38)	E281V	probably benign	Het
Kpna3	T	C	14: 61,372,962 (GRCm38)	N343S	possibly damaging	Het
Larp1b	A	G	3: 41,035,816 (GRCm38)	N133S	probably benign	Het
Larp1b	A	G	3: 41,033,534 (GRCm38)	K64E	possibly damaging	Het
Lctl	T	A	9: 64,122,110 (GRCm38)	L161H	probably damaging	Het
Mlip	A	G	9: 77,230,483 (GRCm38)	S381P	probably damaging	Het
Mroh9	A	G	1: 163,046,032 (GRCm38)	I518T	probably benign	Het
Mst1r	A	G	9: 107,920,012 (GRCm38)	Q1360R	probably benign	Het
Muc5b	T	A	7: 141,864,892 (GRCm38)	C3858*	probably null	Het
Naip1	A	T	13: 100,425,776 (GRCm38)	H960Q	probably benign	Het
Narfl	C	T	17: 25,782,129 (GRCm38)	P452S	probably benign	Het
Nid2	C	A	14: 19,802,530 (GRCm38)	T1102K	probably damaging	Het
Nsmaf	C	T	4: 6,408,563 (GRCm38)	V739M	probably damaging	Het
Olfr1019	T	A	2: 85,841,657 (GRCm38)	M45L	probably benign	Het
Olfr1167	T	C	2: 88,149,518 (GRCm38)	Q167R	probably benign	Het
Olfr1464-ps1	A	G	19: 13,282,590 (GRCm38)	I156T	probably damaging	Het
Olfr727	T	G	14: 50,126,989 (GRCm38)	S137R	probably benign	Het
Olfr97	T	G	17: 37,231,450 (GRCm38)	K307Q	probably benign	Het
Osbpl9	G	A	4: 109,086,339 (GRCm38)	P159S	probably damaging	Het
Parpbp	A	G	10: 88,093,637 (GRCm38)	S450P	probably damaging	Het
Pdgfrb	A	G	18: 61,064,046 (GRCm38)	T185A	probably benign	Het
Pkd1	T	C	17: 24,593,502 (GRCm38)	V3803A	probably damaging	Het
Plau	A	T	14: 20,839,466 (GRCm38)	K200*	probably null	Het
Plce1	A	T	19: 38,524,665 (GRCm38)	Q136L	probably benign	Het
Plekhd1	C	T	12: 80,722,445 (GRCm38)	T493I	probably benign	Het
Pofut1	T	C	2: 153,259,418 (GRCm38)	S31P	unknown	Het
Prlr	T	A	15: 10,325,924 (GRCm38)	I243N	probably damaging	Het
Ptgis	A	G	2: 167,223,988 (GRCm38)	L174P	probably damaging	Het
Ralgapb	T	A	2: 158,450,270 (GRCm38)	I792K	probably damaging	Het
Retreg3	C	T	11: 101,102,980 (GRCm38)	S136N	probably damaging	Het
Rnf213	C	T	11: 119,467,297 (GRCm38)	T4291M		Het
Rtn1	A	G	12: 72,304,143 (GRCm38)	Y431H	probably damaging	Het
Rwdd3	A	G	3: 121,171,604 (GRCm38)		probably benign	Het
Scyl3	A	T	1: 163,950,338 (GRCm38)		probably null	Het
Sh2b2	G	T	5: 136,219,657 (GRCm38)	Q510K	probably damaging	Het
Sh2b3	G	A	5: 121,818,700 (GRCm38)	P333S	probably benign	Het
Slc27a6	A	T	18: 58,609,183 (GRCm38)	N490Y	probably damaging	Het
Slc45a1	C	T	4: 150,638,545 (GRCm38)	R294Q	probably benign	Het
Sorl1	A	C	9: 41,977,582 (GRCm38)	I1974S	possibly damaging	Het
Specc1l	C	A	10: 75,263,286 (GRCm38)	N857K	probably benign	Het
Speg	T	C	1: 75,429,242 (GRCm38)	L3030P	probably damaging	Het
Spsb1	A	C	4: 149,906,900 (GRCm38)	D70E	probably benign	Het
Srsf11	A	G	3: 158,016,425 (GRCm38)	S270P	unknown	Het
Ssr3	A	C	3: 65,387,792 (GRCm38)	V100G	probably damaging	Het
Synpo	G	A	18: 60,604,475 (GRCm38)	T133I	probably damaging	Het
Tas2r120	T	G	6: 132,657,810 (GRCm38)	V285G	probably benign	Het
Tenm4	T	A	7: 96,845,926 (GRCm38)	V1187D	probably damaging	Het
Tmed8	C	A	12: 87,181,388 (GRCm38)		probably null	Het
Tmem51	G	A	4: 142,037,564 (GRCm38)	T61M	probably damaging	Het
Tonsl	A	T	15: 76,630,607 (GRCm38)	D1132E	probably benign	Het
Tor1aip1	C	T	1: 156,007,584 (GRCm38)	V358I	possibly damaging	Het
Txlna	A	T	4: 129,630,319 (GRCm38)	M415K	probably damaging	Het
Tyms	T	A	5: 30,073,560 (GRCm38)		probably benign	Het
Uggt2	G	T	14: 119,089,269 (GRCm38)	L177I	probably benign	Het
Uqcrh	T	C	4: 116,069,879 (GRCm38)	H74R	probably benign	Het
Wnk1	A	T	6: 119,932,738 (GRCm38)	S33T	probably benign	Het
Zfp553	T	A	7: 127,236,016 (GRCm38)	C248S	probably damaging	Het
Zfp574	G	A	7: 25,080,576 (GRCm38)	C341Y	possibly damaging	Het
Zfp729b	T	C	13: 67,591,498 (GRCm38)	T883A	possibly damaging	Het
Zfp738	T	A	13: 67,670,203 (GRCm38)	K556N	probably damaging	Het

Other mutations in Neo1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00514:Neo1	APN	9	58,921,919 (GRCm38)	splice site	probably benign
IGL00885:Neo1	APN	9	58,888,463 (GRCm38)	missense	probably damaging	1.00
IGL01103:Neo1	APN	9	58,880,799 (GRCm38)	missense	possibly damaging	0.60
IGL01322:Neo1	APN	9	58,907,085 (GRCm38)	missense	possibly damaging	0.68
IGL02216:Neo1	APN	9	58,917,053 (GRCm38)	missense	probably damaging	0.96
IGL02327:Neo1	APN	9	58,903,088 (GRCm38)	missense	probably benign	0.08
IGL02392:Neo1	APN	9	58,925,811 (GRCm38)	missense	possibly damaging	0.49
IGL02458:Neo1	APN	9	58,893,867 (GRCm38)	splice site	probably benign
IGL03057:Neo1	APN	9	58,878,059 (GRCm38)	missense	probably damaging	1.00
IGL03091:Neo1	APN	9	58,978,668 (GRCm38)	missense	probably damaging	0.98
IGL03193:Neo1	APN	9	58,908,484 (GRCm38)	missense	probably damaging	1.00
R0097:Neo1	UTSW	9	58,882,021 (GRCm38)	intron	probably benign
R0419:Neo1	UTSW	9	58,990,180 (GRCm38)	splice site	probably benign
R0571:Neo1	UTSW	9	58,985,786 (GRCm38)	missense	probably benign
R0646:Neo1	UTSW	9	58,931,034 (GRCm38)	missense	probably damaging	1.00
R0736:Neo1	UTSW	9	58,917,081 (GRCm38)	missense	possibly damaging	0.78
R0739:Neo1	UTSW	9	58,921,877 (GRCm38)	missense	probably benign	0.22
R1636:Neo1	UTSW	9	58,913,277 (GRCm38)	missense	probably damaging	1.00
R1694:Neo1	UTSW	9	58,880,603 (GRCm38)	missense	probably damaging	1.00
R1827:Neo1	UTSW	9	58,917,031 (GRCm38)	nonsense	probably null
R1927:Neo1	UTSW	9	58,990,385 (GRCm38)	missense	probably benign	0.12
R2354:Neo1	UTSW	9	58,985,634 (GRCm38)	missense	probably benign
R2365:Neo1	UTSW	9	58,956,003 (GRCm38)	missense	probably benign
R3156:Neo1	UTSW	9	58,888,979 (GRCm38)	splice site	probably null
R3552:Neo1	UTSW	9	58,893,878 (GRCm38)	missense	probably damaging	1.00
R3829:Neo1	UTSW	9	58,913,169 (GRCm38)	missense	possibly damaging	0.58
R4477:Neo1	UTSW	9	58,877,299 (GRCm38)	missense	probably damaging	0.99
R4613:Neo1	UTSW	9	58,889,041 (GRCm38)	missense	possibly damaging	0.94
R5023:Neo1	UTSW	9	58,990,271 (GRCm38)	missense	probably damaging	1.00
R5046:Neo1	UTSW	9	58,893,911 (GRCm38)	missense	possibly damaging	0.77
R5057:Neo1	UTSW	9	58,990,271 (GRCm38)	missense	probably damaging	1.00
R5323:Neo1	UTSW	9	58,906,648 (GRCm38)	critical splice donor site	probably null
R5394:Neo1	UTSW	9	58,990,234 (GRCm38)	missense	probably benign	0.10
R5470:Neo1	UTSW	9	58,931,067 (GRCm38)	missense	probably damaging	1.00
R5473:Neo1	UTSW	9	58,880,843 (GRCm38)	missense	possibly damaging	0.88
R5500:Neo1	UTSW	9	58,917,054 (GRCm38)	missense	possibly damaging	0.94
R5503:Neo1	UTSW	9	58,985,650 (GRCm38)	missense	possibly damaging	0.67
R6122:Neo1	UTSW	9	58,917,008 (GRCm38)	missense	probably benign
R6191:Neo1	UTSW	9	58,889,029 (GRCm38)	missense	probably damaging	1.00
R6431:Neo1	UTSW	9	58,907,071 (GRCm38)	missense	probably benign	0.27
R6560:Neo1	UTSW	9	58,880,601 (GRCm38)	missense	possibly damaging	0.95
R6658:Neo1	UTSW	9	58,921,849 (GRCm38)	missense	probably benign	0.14
R6772:Neo1	UTSW	9	58,902,976 (GRCm38)	missense	probably damaging	1.00
R6912:Neo1	UTSW	9	58,917,052 (GRCm38)	missense	probably benign	0.00
R7061:Neo1	UTSW	9	58,990,441 (GRCm38)	missense	possibly damaging	0.95
R7145:Neo1	UTSW	9	58,889,179 (GRCm38)	missense	probably damaging	1.00
R7156:Neo1	UTSW	9	58,902,923 (GRCm38)	missense	probably damaging	1.00
R7485:Neo1	UTSW	9	58,884,543 (GRCm38)	missense	probably benign	0.04
R7519:Neo1	UTSW	9	58,878,065 (GRCm38)	missense	probably benign	0.13
R7665:Neo1	UTSW	9	58,925,795 (GRCm38)	missense	probably damaging	1.00
R7695:Neo1	UTSW	9	58,902,929 (GRCm38)	missense	possibly damaging	0.81
R7753:Neo1	UTSW	9	58,956,005 (GRCm38)	missense	probably benign	0.00
R7807:Neo1	UTSW	9	58,990,494 (GRCm38)	missense	probably benign	0.01
R7915:Neo1	UTSW	9	58,930,981 (GRCm38)	missense	probably benign	0.42
R7973:Neo1	UTSW	9	58,990,193 (GRCm38)	missense	probably damaging	1.00
R8356:Neo1	UTSW	9	58,878,119 (GRCm38)	missense	probably damaging	1.00
R8505:Neo1	UTSW	9	58,913,283 (GRCm38)	missense	probably benign	0.02
R8700:Neo1	UTSW	9	58,918,630 (GRCm38)	missense	probably benign	0.28
R8798:Neo1	UTSW	9	58,913,166 (GRCm38)	missense	probably damaging	1.00
R8952:Neo1	UTSW	9	58,990,262 (GRCm38)	missense	probably benign	0.01
R9779:Neo1	UTSW	9	58,978,726 (GRCm38)	nonsense	probably null
R9784:Neo1	UTSW	9	58,982,220 (GRCm38)	missense	probably benign
R9789:Neo1	UTSW	9	58,894,024 (GRCm38)	critical splice acceptor site	probably null
X0063:Neo1	UTSW	9	58,990,298 (GRCm38)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GCACCTTGCACTGAATACTTAAAC -3'
(R):5'- GTCTGTGCAAGCATGTTAAGC -3'

Sequencing Primer
(F):5'- GCACTGAATACTTAAACTCAGGG -3'
(R):5'- GTGCAAGCATGTTAAGCATCTCTCTG -3'

Posted On

2019-10-24