Incidental Mutation 'R7619:Wdr25'
ID 589067
Institutional Source Beutler Lab
Gene Symbol Wdr25
Ensembl Gene ENSMUSG00000040877
Gene Name WD repeat domain 25
Synonyms B930090D16Rik
MMRRC Submission 045686-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.932) question?
Stock # R7619 (G1)
Quality Score 225.009
Status Validated
Chromosome 12
Chromosomal Location 108860155-108994380 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 108958819 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glycine to Serine at position 344 (G344S)
Ref Sequence ENSEMBL: ENSMUSP00000035553 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047115] [ENSMUST00000167816] [ENSMUST00000220495]
AlphaFold E9Q349
Predicted Effect possibly damaging
Transcript: ENSMUST00000047115
AA Change: G344S

PolyPhen 2 Score 0.733 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000035553
Gene: ENSMUSG00000040877
AA Change: G344S

DomainStartEndE-ValueType
low complexity region 120 132 N/A INTRINSIC
low complexity region 180 206 N/A INTRINSIC
WD40 226 268 1.83e-7 SMART
WD40 272 311 6.73e-6 SMART
WD40 312 353 2.58e-1 SMART
Blast:WD40 356 402 7e-11 BLAST
Blast:WD40 407 445 6e-8 BLAST
WD40 451 492 9.6e-2 SMART
WD40 495 535 3e-3 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000167816
AA Change: G344S

PolyPhen 2 Score 0.733 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000129855
Gene: ENSMUSG00000040877
AA Change: G344S

DomainStartEndE-ValueType
low complexity region 120 132 N/A INTRINSIC
low complexity region 180 206 N/A INTRINSIC
WD40 226 268 1.83e-7 SMART
WD40 272 311 6.73e-6 SMART
WD40 312 353 2.58e-1 SMART
Blast:WD40 356 402 7e-11 BLAST
Blast:WD40 407 445 6e-8 BLAST
WD40 451 492 9.6e-2 SMART
WD40 495 535 3e-3 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000220495
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.3%
Validation Efficiency 96% (50/52)
Allele List at MGI
Other mutations in this stock
Total: 53 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcc1 C G 16: 14,263,283 (GRCm39) P748A probably damaging Het
Abcc12 A G 8: 87,293,182 (GRCm39) V2A probably damaging Het
Anxa3 T C 5: 96,978,263 (GRCm39) Y216H probably damaging Het
Arpc1a C A 5: 145,041,668 (GRCm39) T317K probably benign Het
C330018D20Rik A G 18: 57,095,483 (GRCm39) L34S probably damaging Het
C5ar1 A G 7: 15,982,504 (GRCm39) F172S probably damaging Het
Ccl27a G A 4: 41,774,166 (GRCm39) probably benign Het
Clip1 T C 5: 123,752,342 (GRCm39) N480D Het
Cttnbp2nl A G 3: 104,912,076 (GRCm39) S603P possibly damaging Het
Dmc1 A T 15: 79,480,443 (GRCm39) probably null Het
Dnhd1 A G 7: 105,323,475 (GRCm39) I626V probably benign Het
Dnm2 A G 9: 21,416,930 (GRCm39) N821S probably benign Het
Dst T C 1: 34,238,509 (GRCm39) L1723S probably benign Het
Ep300 T A 15: 81,492,399 (GRCm39) M245K unknown Het
Fam227a T C 15: 79,501,967 (GRCm39) T536A probably benign Het
Fbn2 G T 18: 58,213,299 (GRCm39) R963S possibly damaging Het
Fbxo42 T G 4: 140,927,673 (GRCm39) I651S possibly damaging Het
Ggnbp1 T A 17: 27,237,105 (GRCm39) M1K probably null Het
Gm10800 AAAGAAAACTGAA ACAAGAAAACTGAA 2: 98,497,378 (GRCm39) probably null Het
Grid2 T C 6: 63,908,085 (GRCm39) F242L possibly damaging Het
Igf2r A G 17: 12,917,160 (GRCm39) V1580A possibly damaging Het
Marchf4 A G 1: 72,574,148 (GRCm39) V50A possibly damaging Het
Mettl15 T A 2: 108,923,220 (GRCm39) R401* probably null Het
Mki67 A T 7: 135,301,106 (GRCm39) H1309Q probably benign Het
Mtor T C 4: 148,547,252 (GRCm39) Y412H probably damaging Het
Myef2 C T 2: 124,965,396 (GRCm39) G15S probably benign Het
Napepld A T 5: 21,880,846 (GRCm39) I183N probably damaging Het
Nbeal2 T C 9: 110,454,886 (GRCm39) E2644G probably benign Het
Neb C T 2: 52,186,438 (GRCm39) R878Q possibly damaging Het
Or52l1 A G 7: 104,829,956 (GRCm39) V203A probably damaging Het
Otol1 A T 3: 69,935,202 (GRCm39) H398L probably damaging Het
Pcdhga9 A G 18: 37,871,805 (GRCm39) S545G probably damaging Het
Pramel19 T G 4: 101,798,497 (GRCm39) F156C probably benign Het
Rhbdl1 T C 17: 26,055,991 (GRCm39) S4G possibly damaging Het
Ric1 A G 19: 29,557,175 (GRCm39) E420G probably benign Het
Sap30l G A 11: 57,698,887 (GRCm39) R120H probably damaging Het
Scn2a T C 2: 65,546,247 (GRCm39) F937L probably damaging Het
Sdf2 G A 11: 78,141,989 (GRCm39) G108D probably damaging Het
Skint5 T C 4: 113,381,305 (GRCm39) S1263G unknown Het
Stab1 A G 14: 30,867,194 (GRCm39) I1722T probably benign Het
Syn3 A G 10: 85,893,428 (GRCm39) S472P unknown Het
Tcp11l2 T C 10: 84,430,622 (GRCm39) F249S probably damaging Het
Thoc7 T A 14: 13,961,819 (GRCm38) probably null Het
Tvp23a C A 16: 10,246,602 (GRCm39) C61F probably damaging Het
Ubfd1 G A 7: 121,666,606 (GRCm39) G34D probably benign Het
Vmn1r160 A T 7: 22,570,967 (GRCm39) T107S probably damaging Het
Vmn2r108 T A 17: 20,692,457 (GRCm39) K133I probably benign Het
Vmn2r15 A T 5: 109,436,190 (GRCm39) probably null Het
Zfp354c C T 11: 50,708,635 (GRCm39) probably null Het
Zfp560 G T 9: 20,260,206 (GRCm39) Q219K probably benign Het
Zfp691 C T 4: 119,028,181 (GRCm39) G17E probably damaging Het
Zfp930 T A 8: 69,661,810 (GRCm39) M1K probably null Het
Zkscan14 A G 5: 145,132,169 (GRCm39) F454S probably benign Het
Other mutations in Wdr25
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00946:Wdr25 APN 12 108,990,953 (GRCm39) missense possibly damaging 0.89
IGL02479:Wdr25 APN 12 108,864,527 (GRCm39) missense probably benign
IGL02672:Wdr25 APN 12 108,864,007 (GRCm39) nonsense probably null
IGL03329:Wdr25 APN 12 108,864,262 (GRCm39) missense probably benign
R1061:Wdr25 UTSW 12 108,958,725 (GRCm39) splice site probably null
R1402:Wdr25 UTSW 12 108,992,465 (GRCm39) missense probably damaging 1.00
R1402:Wdr25 UTSW 12 108,992,465 (GRCm39) missense probably damaging 1.00
R1582:Wdr25 UTSW 12 108,863,980 (GRCm39) missense possibly damaging 0.94
R1764:Wdr25 UTSW 12 108,992,364 (GRCm39) nonsense probably null
R1954:Wdr25 UTSW 12 108,864,467 (GRCm39) missense probably damaging 0.99
R2258:Wdr25 UTSW 12 108,864,100 (GRCm39) missense possibly damaging 0.94
R3770:Wdr25 UTSW 12 108,864,346 (GRCm39) missense probably damaging 0.97
R3803:Wdr25 UTSW 12 108,864,479 (GRCm39) missense probably damaging 1.00
R3948:Wdr25 UTSW 12 108,993,208 (GRCm39) missense probably benign 0.02
R4183:Wdr25 UTSW 12 108,993,257 (GRCm39) missense probably benign 0.00
R5246:Wdr25 UTSW 12 108,993,382 (GRCm39) missense probably benign 0.06
R5290:Wdr25 UTSW 12 108,863,968 (GRCm39) missense probably benign 0.26
R5305:Wdr25 UTSW 12 108,992,366 (GRCm39) missense probably damaging 1.00
R5813:Wdr25 UTSW 12 108,993,347 (GRCm39) missense possibly damaging 0.47
R5942:Wdr25 UTSW 12 108,864,392 (GRCm39) missense probably benign 0.00
R6386:Wdr25 UTSW 12 108,990,991 (GRCm39) missense probably damaging 1.00
R7171:Wdr25 UTSW 12 108,990,922 (GRCm39) missense probably damaging 0.98
R7449:Wdr25 UTSW 12 108,992,367 (GRCm39) missense probably damaging 1.00
R7616:Wdr25 UTSW 12 108,958,819 (GRCm39) missense possibly damaging 0.73
R7617:Wdr25 UTSW 12 108,958,819 (GRCm39) missense possibly damaging 0.73
R7622:Wdr25 UTSW 12 108,958,819 (GRCm39) missense possibly damaging 0.73
R7623:Wdr25 UTSW 12 108,958,819 (GRCm39) missense possibly damaging 0.73
R7984:Wdr25 UTSW 12 108,976,983 (GRCm39) splice site probably null
R8504:Wdr25 UTSW 12 108,992,393 (GRCm39) nonsense probably null
R9598:Wdr25 UTSW 12 108,864,613 (GRCm39) missense probably benign 0.10
Predicted Primers PCR Primer
(F):5'- GGTGGCGTGTGAACATTTCC -3'
(R):5'- CTCTCATAGAAAGGCTGGCC -3'

Sequencing Primer
(F):5'- TCCCCTTTAAAATACTTGTGACATG -3'
(R):5'- TGCACTGAGTACACAGCTTAGTCAG -3'
Posted On 2019-10-24