Incidental Mutation 'R7621:Lmbrd1'
| ID |
589126 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Lmbrd1
|
| Ensembl Gene |
ENSMUSG00000073725 |
| Gene Name |
LMBR1 domain containing 1 |
| Synonyms |
0910001K20Rik |
| MMRRC Submission |
045688-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R7621 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
1 |
| Chromosomal Location |
24717711-24805382 bp(+) (GRCm39) |
| Type of Mutation |
critical splice acceptor site |
| DNA Base Change (assembly) |
A to T
at 24767625 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000140783
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000095062]
[ENSMUST00000186190]
[ENSMUST00000191471]
|
| AlphaFold |
Q8K0B2 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000095062
|
| SMART Domains |
Protein: ENSMUSP00000092672
Gene: ENSMUSG00000073725
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:LMBR1
|
17 |
292 |
3e-24 |
PFAM |
|
transmembrane domain
|
303 |
325 |
N/A |
INTRINSIC |
|
low complexity region
|
344 |
356 |
N/A |
INTRINSIC |
|
transmembrane domain
|
365 |
387 |
N/A |
INTRINSIC |
|
transmembrane domain
|
407 |
429 |
N/A |
INTRINSIC |
|
transmembrane domain
|
486 |
508 |
N/A |
INTRINSIC |
|
low complexity region
|
522 |
531 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000186190
|
| SMART Domains |
Protein: ENSMUSP00000139893
Gene: ENSMUSG00000073725
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
26 |
N/A |
INTRINSIC |
|
transmembrane domain
|
46 |
68 |
N/A |
INTRINSIC |
|
low complexity region
|
113 |
127 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000191471
|
| SMART Domains |
Protein: ENSMUSP00000140783
Gene: ENSMUSG00000073725
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:LMBR1
|
12 |
289 |
2.7e-19 |
PFAM |
|
transmembrane domain
|
303 |
325 |
N/A |
INTRINSIC |
|
low complexity region
|
344 |
356 |
N/A |
INTRINSIC |
|
transmembrane domain
|
365 |
387 |
N/A |
INTRINSIC |
|
transmembrane domain
|
407 |
429 |
N/A |
INTRINSIC |
|
transmembrane domain
|
486 |
508 |
N/A |
INTRINSIC |
|
low complexity region
|
522 |
531 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.9479 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.7%
- 20x: 99.1%
|
| Validation Efficiency |
100% (45/45) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a lysosomal membrane protein that may be involved in the transport and metabolism of cobalamin. This protein also interacts with the large form of the hepatitis delta antigen and may be required for the nucleocytoplasmic shuttling of the hepatitis delta virus. Mutations in this gene are associated with the vitamin B12 metabolism disorder termed, homocystinuria-megaloblastic anemia complementation type F.[provided by RefSeq, Oct 2009]
PHENOTYPE: Mice heterozygous for a targeted allele exhibit increased cardiac cell glucose uptake. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 47 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca9 |
T |
A |
11: 110,051,359 (GRCm39) |
K112N |
probably benign |
Het |
| Brwd1 |
A |
G |
16: 95,866,087 (GRCm39) |
S232P |
probably damaging |
Het |
| Calm5 |
A |
T |
13: 3,904,629 (GRCm39) |
M108L |
possibly damaging |
Het |
| Ces1g |
A |
T |
8: 94,055,094 (GRCm39) |
V201D |
probably damaging |
Het |
| Cltc |
C |
A |
11: 86,598,312 (GRCm39) |
V1017L |
probably benign |
Het |
| Cpt1c |
C |
T |
7: 44,616,516 (GRCm39) |
R245Q |
probably damaging |
Het |
| Csrnp1 |
C |
A |
9: 119,806,158 (GRCm39) |
A39S |
probably benign |
Het |
| Elf1 |
A |
G |
14: 79,808,322 (GRCm39) |
D258G |
possibly damaging |
Het |
| Entrep1 |
A |
C |
19: 23,972,168 (GRCm39) |
S179A |
possibly damaging |
Het |
| Glipr1l1 |
A |
T |
10: 111,896,300 (GRCm39) |
D29V |
probably benign |
Het |
| Gm4340 |
T |
C |
10: 104,031,820 (GRCm39) |
V188A |
probably benign |
Het |
| Gsdma2 |
T |
C |
11: 98,540,375 (GRCm39) |
M98T |
probably benign |
Het |
| Hars1 |
A |
T |
18: 36,903,476 (GRCm39) |
D315E |
probably benign |
Het |
| Hsph1 |
A |
C |
5: 149,555,540 (GRCm39) |
Y89D |
probably damaging |
Het |
| Ighv11-2 |
T |
A |
12: 114,012,008 (GRCm39) |
D69V |
probably benign |
Het |
| Kirrel1 |
C |
T |
3: 86,995,528 (GRCm39) |
G438D |
possibly damaging |
Het |
| Krt6a |
G |
T |
15: 101,600,187 (GRCm39) |
T355K |
possibly damaging |
Het |
| Lce1m |
T |
C |
3: 92,925,177 (GRCm39) |
|
probably null |
Het |
| Lmtk3 |
A |
G |
7: 45,442,841 (GRCm39) |
E508G |
probably damaging |
Het |
| Lrrc2 |
G |
A |
9: 110,809,899 (GRCm39) |
V312I |
probably benign |
Het |
| Lyn |
A |
T |
4: 3,789,834 (GRCm39) |
K477* |
probably null |
Het |
| Nfe2l2 |
T |
C |
2: 75,509,757 (GRCm39) |
D21G |
probably damaging |
Het |
| Or14c45 |
G |
A |
7: 86,176,280 (GRCm39) |
C105Y |
probably benign |
Het |
| Or4f14d |
T |
C |
2: 111,960,926 (GRCm39) |
T77A |
probably benign |
Het |
| Or55b3 |
G |
A |
7: 102,126,472 (GRCm39) |
R202C |
possibly damaging |
Het |
| Or8c15 |
T |
C |
9: 38,120,447 (GRCm39) |
F31L |
probably benign |
Het |
| Pgap6 |
C |
A |
17: 26,336,865 (GRCm39) |
P261Q |
probably benign |
Het |
| Pkm |
T |
A |
9: 59,585,441 (GRCm39) |
C474* |
probably null |
Het |
| Prr36 |
T |
A |
8: 4,263,150 (GRCm39) |
I839F |
unknown |
Het |
| Qtrt2 |
A |
G |
16: 43,689,303 (GRCm39) |
|
probably null |
Het |
| Ripk4 |
A |
T |
16: 97,547,125 (GRCm39) |
V379E |
probably damaging |
Het |
| Rreb1 |
C |
A |
13: 38,133,042 (GRCm39) |
P304Q |
|
Het |
| Saxo2 |
A |
T |
7: 82,297,625 (GRCm39) |
C5S |
possibly damaging |
Het |
| Scart2 |
G |
A |
7: 139,876,742 (GRCm39) |
G711D |
probably damaging |
Het |
| Sema5a |
C |
A |
15: 32,609,378 (GRCm39) |
T428N |
possibly damaging |
Het |
| Setd5 |
C |
A |
6: 113,121,010 (GRCm39) |
P1073Q |
possibly damaging |
Het |
| Sh2d5 |
T |
G |
4: 137,984,150 (GRCm39) |
C173G |
probably benign |
Het |
| Slc4a10 |
T |
G |
2: 62,080,823 (GRCm39) |
V350G |
probably damaging |
Het |
| Slco1a6 |
A |
G |
6: 142,106,743 (GRCm39) |
C15R |
probably damaging |
Het |
| Smg7 |
A |
T |
1: 152,717,295 (GRCm39) |
F940Y |
possibly damaging |
Het |
| Spata17 |
T |
A |
1: 186,854,833 (GRCm39) |
|
probably null |
Het |
| Specc1 |
A |
G |
11: 62,019,210 (GRCm39) |
N603S |
possibly damaging |
Het |
| Tbc1d1 |
A |
G |
5: 64,421,673 (GRCm39) |
D355G |
probably damaging |
Het |
| Thbs2 |
T |
C |
17: 14,894,426 (GRCm39) |
D807G |
probably benign |
Het |
| Usp53 |
T |
C |
3: 122,754,934 (GRCm39) |
T174A |
probably benign |
Het |
| Vmn2r52 |
A |
G |
7: 9,907,274 (GRCm39) |
Y151H |
probably benign |
Het |
| Wdr12 |
G |
A |
1: 60,136,748 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Lmbrd1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01369:Lmbrd1
|
APN |
1 |
24,745,055 (GRCm39) |
splice site |
probably benign |
|
|
IGL01897:Lmbrd1
|
APN |
1 |
24,782,977 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
IGL01950:Lmbrd1
|
APN |
1 |
24,750,683 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02342:Lmbrd1
|
APN |
1 |
24,743,959 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02888:Lmbrd1
|
APN |
1 |
24,754,053 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
P0033:Lmbrd1
|
UTSW |
1 |
24,724,646 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R0479:Lmbrd1
|
UTSW |
1 |
24,785,878 (GRCm39) |
splice site |
probably benign |
|
|
R0549:Lmbrd1
|
UTSW |
1 |
24,784,001 (GRCm39) |
missense |
probably benign |
0.17 |
|
R1015:Lmbrd1
|
UTSW |
1 |
24,770,959 (GRCm39) |
nonsense |
probably null |
|
|
R1423:Lmbrd1
|
UTSW |
1 |
24,785,959 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1636:Lmbrd1
|
UTSW |
1 |
24,786,011 (GRCm39) |
nonsense |
probably null |
|
|
R1650:Lmbrd1
|
UTSW |
1 |
24,750,639 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R1815:Lmbrd1
|
UTSW |
1 |
24,724,642 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R2354:Lmbrd1
|
UTSW |
1 |
24,724,622 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3690:Lmbrd1
|
UTSW |
1 |
24,801,374 (GRCm39) |
makesense |
probably null |
|
|
R3713:Lmbrd1
|
UTSW |
1 |
24,732,076 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4241:Lmbrd1
|
UTSW |
1 |
24,732,049 (GRCm39) |
nonsense |
probably null |
|
|
R4627:Lmbrd1
|
UTSW |
1 |
24,745,080 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4782:Lmbrd1
|
UTSW |
1 |
24,784,056 (GRCm39) |
splice site |
probably null |
|
|
R4799:Lmbrd1
|
UTSW |
1 |
24,784,056 (GRCm39) |
splice site |
probably null |
|
|
R5341:Lmbrd1
|
UTSW |
1 |
24,785,892 (GRCm39) |
nonsense |
probably null |
|
|
R5430:Lmbrd1
|
UTSW |
1 |
24,732,061 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5483:Lmbrd1
|
UTSW |
1 |
24,783,989 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5633:Lmbrd1
|
UTSW |
1 |
24,787,943 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R6188:Lmbrd1
|
UTSW |
1 |
24,750,626 (GRCm39) |
missense |
probably benign |
|
|
R6383:Lmbrd1
|
UTSW |
1 |
24,745,115 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6617:Lmbrd1
|
UTSW |
1 |
24,724,509 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7060:Lmbrd1
|
UTSW |
1 |
24,732,047 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7365:Lmbrd1
|
UTSW |
1 |
24,783,948 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R8807:Lmbrd1
|
UTSW |
1 |
24,770,843 (GRCm39) |
missense |
probably benign |
0.16 |
|
R8871:Lmbrd1
|
UTSW |
1 |
24,783,435 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8944:Lmbrd1
|
UTSW |
1 |
24,767,407 (GRCm39) |
intron |
probably benign |
|
|
R8954:Lmbrd1
|
UTSW |
1 |
24,745,121 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R9345:Lmbrd1
|
UTSW |
1 |
24,724,593 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9665:Lmbrd1
|
UTSW |
1 |
24,732,065 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCTGTACACATGTAACTGGGG -3'
(R):5'- TCTTGAAGGACCACAACGGC -3'
Sequencing Primer
(F):5'- CCTGTACACATGTAACTGGGGTAAAG -3'
(R):5'- ACCACAACGGCAGGGTGAC -3'
|
| Posted On |
2019-10-24 |
Incidental Mutation