Mutagenetix > Incidental Mutation

Incidental Mutation 'R7622:Wdr25'

589212

Institutional Source

Beutler Lab

Gene Symbol

Wdr25

Ensembl Gene

ENSMUSG00000040877

Gene Name

WD repeat domain 25

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Probably essential (E-score: 0.934) question?

Stock #

R7622 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

108893631-109028452 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 108992893 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Serine at position 344 (G344S)

Ref Sequence

ENSEMBL: ENSMUSP00000035553 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047115] [ENSMUST00000167816] [ENSMUST00000220495]

AlphaFold

E9Q349

Predicted Effect

possibly damaging
Transcript: ENSMUST00000047115
AA Change: G344S

PolyPhen 2 Score 0.733 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000035553
Gene: ENSMUSG00000040877
AA Change: G344S

Domain	Start	End	E-Value	Type
low complexity region	120	132	N/A	INTRINSIC
low complexity region	180	206	N/A	INTRINSIC
WD40	226	268	1.83e-7	SMART
WD40	272	311	6.73e-6	SMART
WD40	312	353	2.58e-1	SMART
Blast:WD40	356	402	7e-11	BLAST
Blast:WD40	407	445	6e-8	BLAST
WD40	451	492	9.6e-2	SMART
WD40	495	535	3e-3	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000167816
AA Change: G344S

PolyPhen 2 Score 0.733 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000129855
Gene: ENSMUSG00000040877
AA Change: G344S

Domain	Start	End	E-Value	Type
low complexity region	120	132	N/A	INTRINSIC
low complexity region	180	206	N/A	INTRINSIC
WD40	226	268	1.83e-7	SMART
WD40	272	311	6.73e-6	SMART
WD40	312	353	2.58e-1	SMART
Blast:WD40	356	402	7e-11	BLAST
Blast:WD40	407	445	6e-8	BLAST
WD40	451	492	9.6e-2	SMART
WD40	495	535	3e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000220495

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

98% (55/56)

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932438A13Rik	C	A	3: 36,948,413	C1502*	probably null	Het
Adgrd1	G	A	5: 129,139,624	D384N	probably benign	Het
Aqp8	T	C	7: 123,466,660	F226S	possibly damaging	Het
Arl6ip6	A	G	2: 53,217,327	Y207C	probably damaging	Het
Cbfa2t2	A	G	2: 154,500,445	E27G	possibly damaging	Het
Cdc42bpb	T	G	12: 111,294,772	E201A	unknown	Het
Cfap54	A	C	10: 92,956,944	V1769G	unknown	Het
Dmxl2	C	T	9: 54,472,218	G7S	probably damaging	Het
Dnah6	G	T	6: 73,124,759	F1927L	possibly damaging	Het
Dnajc6	A	G	4: 101,640,491	E942G	probably damaging	Het
Fam170a	A	G	18: 50,282,902	R324G	probably benign	Het
Gapdhs	G	A	7: 30,739,331	T9I	unknown	Het
Gm10320	T	A	13: 98,489,724	R51*	probably null	Het
Gm19410	A	T	8: 35,810,347	T1776S	possibly damaging	Het
Gm4846	A	T	1: 166,495,872	M94K	possibly damaging	Het
Ighv2-5	G	A	12: 113,685,738	Q32*	probably null	Het
Klc2	T	C	19: 5,111,632	E310G	probably damaging	Het
Krt75	A	G	15: 101,570,272	M309T	probably damaging	Het
Lrp11	G	A	10: 7,590,172	G41R	unknown	Het
Lrrc52	G	T	1: 167,466,095	P207Q	probably benign	Het
Lrrc52	G	T	1: 167,466,096	P207T	probably benign	Het
Lrrk2	A	T	15: 91,812,323	D2438V	probably damaging	Het
Mycbp	C	T	4: 123,905,301	T28M	probably damaging	Het
Myh14	A	G	7: 44,632,422	V804A	probably benign	Het
Myo16	A	G	8: 10,376,238	I332V	unknown	Het
Ncor1	G	T	11: 62,317,968	Q1359K	probably benign	Het
Olfr1055	A	G	2: 86,347,662	Y35H	possibly damaging	Het
Olfr1112	A	T	2: 87,192,250	I188L	probably benign	Het
Olfr50	A	G	2: 36,793,931	K232E	probably benign	Het
Olfr548-ps1	A	G	7: 102,542,623	H229R	probably benign	Het
Oog3	T	C	4: 144,158,319	D349G	probably benign	Het
Pate4	A	G	9: 35,608,299	S32P	possibly damaging	Het
Pcdhb7	A	C	18: 37,342,461	S217R	probably benign	Het
Pde1c	G	A	6: 56,126,925	R580C	probably damaging	Het
Pi4ka	C	A	16: 17,293,977	A1545S		Het
Pign	G	T	1: 105,648,117	T266K	possibly damaging	Het
Pitpnm2	A	G	5: 124,122,027	I1134T	probably benign	Het
Ppfia2	G	A	10: 106,830,659	V409I	possibly damaging	Het
Prr7	A	G	13: 55,472,796	T206A	probably benign	Het
Rnf13	A	T	3: 57,820,534	R212*	probably null	Het
Rwdd2b	T	C	16: 87,434,612	N218S	probably benign	Het
Serpina3m	A	G	12: 104,389,575	D167G	possibly damaging	Het
Slit2	A	T	5: 47,985,205	N56Y	probably damaging	Het
Sprr3	G	T	3: 92,457,285	T84K	probably damaging	Het
Stab2	A	T	10: 86,873,902	H1626Q	possibly damaging	Het
Tex2	C	A	11: 106,546,895	D650Y	unknown	Het
Tmprss6	A	G	15: 78,446,726	S436P	probably benign	Het
Uba2	A	C	7: 34,165,435	F63L	probably damaging	Het
Ubxn2b	C	T	4: 6,214,692	S242L	probably damaging	Het
Vmn1r86	T	G	7: 13,102,758	I64L	probably benign	Het
Vmn2r67	A	T	7: 85,136,454	V781E	probably damaging	Het
Vmn2r80	T	A	10: 79,194,263	F641Y	probably damaging	Het
Wdfy4	A	T	14: 33,078,274	I1965K		Het
Wdr90	G	T	17: 25,854,109	F837L	probably benign	Het
Xpo4	A	G	14: 57,597,011	V704A	possibly damaging	Het
Zc3h12d	A	G	10: 7,867,269	K268E	probably damaging	Het

Other mutations in Wdr25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00946:Wdr25	APN	12	109025027	missense	possibly damaging	0.89
IGL02479:Wdr25	APN	12	108898601	missense	probably benign
IGL02672:Wdr25	APN	12	108898081	nonsense	probably null
IGL03329:Wdr25	APN	12	108898336	missense	probably benign
R1061:Wdr25	UTSW	12	108992799	splice site	probably null
R1402:Wdr25	UTSW	12	109026539	missense	probably damaging	1.00
R1402:Wdr25	UTSW	12	109026539	missense	probably damaging	1.00
R1582:Wdr25	UTSW	12	108898054	missense	possibly damaging	0.94
R1764:Wdr25	UTSW	12	109026438	nonsense	probably null
R1954:Wdr25	UTSW	12	108898541	missense	probably damaging	0.99
R2258:Wdr25	UTSW	12	108898174	missense	possibly damaging	0.94
R3770:Wdr25	UTSW	12	108898420	missense	probably damaging	0.97
R3803:Wdr25	UTSW	12	108898553	missense	probably damaging	1.00
R3948:Wdr25	UTSW	12	109027282	missense	probably benign	0.02
R4183:Wdr25	UTSW	12	109027331	missense	probably benign	0.00
R5246:Wdr25	UTSW	12	109027456	missense	probably benign	0.06
R5290:Wdr25	UTSW	12	108898042	missense	probably benign	0.26
R5305:Wdr25	UTSW	12	109026440	missense	probably damaging	1.00
R5813:Wdr25	UTSW	12	109027421	missense	possibly damaging	0.47
R5942:Wdr25	UTSW	12	108898466	missense	probably benign	0.00
R6386:Wdr25	UTSW	12	109025065	missense	probably damaging	1.00
R7171:Wdr25	UTSW	12	109024996	missense	probably damaging	0.98
R7449:Wdr25	UTSW	12	109026441	missense	probably damaging	1.00
R7616:Wdr25	UTSW	12	108992893	missense	possibly damaging	0.73
R7617:Wdr25	UTSW	12	108992893	missense	possibly damaging	0.73
R7619:Wdr25	UTSW	12	108992893	missense	possibly damaging	0.73
R7623:Wdr25	UTSW	12	108992893	missense	possibly damaging	0.73
R7984:Wdr25	UTSW	12	109011057	splice site	probably null
R8504:Wdr25	UTSW	12	109026467	nonsense	probably null
R9598:Wdr25	UTSW	12	108898687	missense	probably benign	0.10

Predicted Primers

PCR Primer
(F):5'- GTCTATACTGGACCGCATAGGG -3'
(R):5'- CTCTCATAGAAAGGCTGGCC -3'

Sequencing Primer
(F):5'- ACCGCATAGGGCCATGGTG -3'
(R):5'- TGCACTGAGTACACAGCTTAGTCAG -3'

Posted On

2019-10-24