Mutagenetix > Incidental Mutation

Incidental Mutation 'R7623:Slc16a4'

589240

Institutional Source

Beutler Lab

Gene Symbol

Slc16a4

Ensembl Gene

ENSMUSG00000027896

Gene Name

solute carrier family 16 (monocarboxylic acid transporters), member 4

Synonyms

MMRRC Submission

045718-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7623 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

107198546-107219431 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 107205297 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 42 (A42T)

Ref Sequence

ENSEMBL: ENSMUSP00000029502 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029502] [ENSMUST00000106723]

AlphaFold

Q8R0M8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000029502
AA Change: A42T

PolyPhen 2 Score 0.715 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000029502
Gene: ENSMUSG00000027896
AA Change: A42T

Domain	Start	End	E-Value	Type
Pfam:MFS_1	27	373	8.2e-26	PFAM
Pfam:MFS_1	305	499	2e-17	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000106723
AA Change: A42T

PolyPhen 2 Score 0.638 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000102334
Gene: ENSMUSG00000027896
AA Change: A42T

Domain	Start	End	E-Value	Type
Pfam:MFS_1	27	375	2.1e-28	PFAM
Pfam:MFS_1	327	462	3.6e-11	PFAM

Meta Mutation Damage Score

0.0906

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

99% (68/69)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2510009E07Rik	G	T	16: 21,513,092 (GRCm39)	L22M	probably damaging	Het
Abca9	T	C	11: 109,998,384 (GRCm39)	N1468S	probably benign	Het
Abcc5	C	T	16: 20,163,446 (GRCm39)	D1264N	possibly damaging	Het
Abhd10	A	G	16: 45,553,099 (GRCm39)		probably benign	Het
Acadvl	G	T	11: 69,901,569 (GRCm39)	A570E	probably damaging	Het
Adgrb3	T	A	1: 25,586,629 (GRCm39)	S355C	probably damaging	Het
Adgrv1	A	G	13: 81,570,344 (GRCm39)	V4953A	possibly damaging	Het
Ano2	T	A	6: 125,992,536 (GRCm39)	Y836*	probably null	Het
Bach1	G	A	16: 87,516,179 (GRCm39)	R240Q	probably benign	Het
Ccdc8	T	A	7: 16,730,537 (GRCm39)	D675E	possibly damaging	Het
Ccnb2	A	G	9: 70,326,170 (GRCm39)	V58A	probably benign	Het
Cdcp3	T	A	7: 130,879,295 (GRCm39)		probably null	Het
Cdh24	A	T	14: 54,875,547 (GRCm39)	Y296N	probably damaging	Het
Cfap46	T	C	7: 139,198,266 (GRCm39)	E2054G	unknown	Het
Cnot1	A	T	8: 96,454,276 (GRCm39)	F2067I	probably damaging	Het
Csmd3	A	G	15: 47,813,334 (GRCm39)	F329S		Het
Dact3	C	A	7: 16,619,840 (GRCm39)	T445K	unknown	Het
Dph6	C	A	2: 114,485,379 (GRCm39)		probably benign	Het
Dst	T	A	1: 34,209,517 (GRCm39)	C1195S	probably damaging	Het
Eeig1	A	G	2: 32,456,346 (GRCm39)	D336G	possibly damaging	Het
Fat3	T	A	9: 15,899,620 (GRCm39)	N3138Y	probably damaging	Het
Fbxw25	T	C	9: 109,483,651 (GRCm39)	N187S		Het
Fuca1	A	G	4: 135,660,405 (GRCm39)	I308V	probably benign	Het
Galnt5	A	G	2: 57,907,222 (GRCm39)	R562G	probably damaging	Het
Gas8	G	T	8: 124,249,718 (GRCm39)	R44S	probably damaging	Het
Gja5	T	C	3: 96,958,071 (GRCm39)	S43P	possibly damaging	Het
Gm14403	A	G	2: 177,200,405 (GRCm39)	D117G	probably benign	Het
Gmpr2	G	A	14: 55,910,491 (GRCm39)	V58M	probably damaging	Het
Gtpbp6	T	A	5: 110,252,950 (GRCm39)	I301F	probably damaging	Het
H2bc22	T	A	13: 21,971,762 (GRCm39)	D26E	probably benign	Het
Hdhd5	T	C	6: 120,498,212 (GRCm39)	Y129C	probably damaging	Het
Hemgn	A	G	4: 46,396,504 (GRCm39)	M244T	probably benign	Het
Hoxa1	T	G	6: 52,135,238 (GRCm39)		probably null	Het
Iglc1	T	A	16: 18,880,551 (GRCm39)	H90L		Het
Lamb2	C	T	9: 108,366,423 (GRCm39)	S1545F	possibly damaging	Het
Mc4r	T	C	18: 66,992,580 (GRCm39)	T178A	probably benign	Het
Mcam	T	A	9: 44,050,955 (GRCm39)	S346T	probably benign	Het
Mis18bp1	A	G	12: 65,195,626 (GRCm39)	S713P	probably benign	Het
Mybl2	A	G	2: 162,914,752 (GRCm39)	Y290C	probably damaging	Het
Or4k44	T	C	2: 111,368,281 (GRCm39)	M118V	probably damaging	Het
Or7e168	A	T	9: 19,720,225 (GRCm39)	I204F	possibly damaging	Het
Pak6	A	G	2: 118,525,068 (GRCm39)	T565A	probably damaging	Het
Pde5a	A	G	3: 122,568,250 (GRCm39)	T284A	probably benign	Het
Pkd1l2	A	T	8: 117,756,384 (GRCm39)	F1616Y	probably damaging	Het
Pp2d1	T	C	17: 53,822,907 (GRCm39)	E53G	probably benign	Het
Ppp3cc	A	C	14: 70,478,394 (GRCm39)	S269R	probably benign	Het
Ptprb	A	C	10: 116,205,214 (GRCm39)	D1856A	possibly damaging	Het
Rgs22	A	T	15: 36,040,856 (GRCm39)	V1001E	probably benign	Het
Rnf8	T	A	17: 29,847,980 (GRCm39)	V344E	probably benign	Het
Rpn1	T	C	6: 88,061,550 (GRCm39)	L13P	possibly damaging	Het
Rsbn1	A	T	3: 103,822,326 (GRCm39)	H187L	probably benign	Het
Sdr16c6	T	A	4: 4,058,801 (GRCm39)	I262F	not run	Het
Sec22a	A	G	16: 35,149,894 (GRCm39)	F211L	probably benign	Het
Smap1	T	A	1: 23,887,376 (GRCm39)	Q386L	probably benign	Het
Sos1	A	T	17: 80,787,323 (GRCm39)	F10L	probably benign	Het
Sptbn2	A	G	19: 4,776,196 (GRCm39)	T202A	probably damaging	Het
Stab1	C	A	14: 30,862,578 (GRCm39)	V2282L	probably benign	Het
Tex55	C	T	16: 38,648,453 (GRCm39)	D219N	possibly damaging	Het
Tmprss11f	C	T	5: 86,672,019 (GRCm39)	G391D	probably damaging	Het
Tnfaip2	A	G	12: 111,412,072 (GRCm39)	S158G	probably damaging	Het
Trav6d-5	A	G	14: 53,032,843 (GRCm39)	T31A	probably benign	Het
Tst	G	A	15: 78,289,903 (GRCm39)	A44V	probably damaging	Het
Vmn1r210	A	T	13: 23,011,405 (GRCm39)	F294I	probably benign	Het
Vwc2	T	C	11: 11,066,415 (GRCm39)	F168L	probably damaging	Het
Wdr25	G	A	12: 108,958,819 (GRCm39)	G344S	possibly damaging	Het
Zfp605	A	G	5: 110,275,386 (GRCm39)	Y168C	probably benign	Het
Zfp790	T	A	7: 29,525,130 (GRCm39)	Y49*	probably null	Het
Zfp93	T	C	7: 23,975,794 (GRCm39)	F593S	probably damaging	Het
Zfr	C	T	15: 12,160,614 (GRCm39)	T729I	possibly damaging	Het

Other mutations in Slc16a4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01065:Slc16a4	APN	3	107,210,416 (GRCm39)	missense	possibly damaging	0.67
IGL01311:Slc16a4	APN	3	107,199,821 (GRCm39)	missense	possibly damaging	0.83
IGL01509:Slc16a4	APN	3	107,218,750 (GRCm39)	critical splice acceptor site	probably null
IGL01780:Slc16a4	APN	3	107,210,415 (GRCm39)	missense	probably benign	0.00
IGL02294:Slc16a4	APN	3	107,208,384 (GRCm39)	missense	probably benign	0.00
IGL02350:Slc16a4	APN	3	107,210,415 (GRCm39)	missense	probably benign	0.00
IGL02357:Slc16a4	APN	3	107,210,415 (GRCm39)	missense	probably benign	0.00
IGL02792:Slc16a4	APN	3	107,206,193 (GRCm39)	missense	probably benign
IGL02873:Slc16a4	APN	3	107,208,111 (GRCm39)	missense	probably benign	0.00
IGL03001:Slc16a4	APN	3	107,218,858 (GRCm39)	missense	possibly damaging	0.91
IGL03002:Slc16a4	APN	3	107,208,102 (GRCm39)	missense	probably benign	0.07
R0370:Slc16a4	UTSW	3	107,208,413 (GRCm39)	missense	possibly damaging	0.66
R0525:Slc16a4	UTSW	3	107,205,255 (GRCm39)	splice site	probably benign
R1192:Slc16a4	UTSW	3	107,206,189 (GRCm39)	missense	probably benign	0.07
R1458:Slc16a4	UTSW	3	107,208,248 (GRCm39)	missense	probably benign	0.00
R1939:Slc16a4	UTSW	3	107,208,317 (GRCm39)	missense	probably benign	0.00
R2061:Slc16a4	UTSW	3	107,208,027 (GRCm39)	missense	probably benign	0.00
R2098:Slc16a4	UTSW	3	107,208,163 (GRCm39)	nonsense	probably null
R2102:Slc16a4	UTSW	3	107,211,819 (GRCm39)	splice site	probably null
R3411:Slc16a4	UTSW	3	107,208,188 (GRCm39)	missense	probably benign
R4983:Slc16a4	UTSW	3	107,208,176 (GRCm39)	missense	probably benign	0.00
R5394:Slc16a4	UTSW	3	107,199,758 (GRCm39)	missense	probably benign
R5804:Slc16a4	UTSW	3	107,206,280 (GRCm39)	missense	probably benign	0.04
R6077:Slc16a4	UTSW	3	107,208,381 (GRCm39)	missense	possibly damaging	0.91
R6626:Slc16a4	UTSW	3	107,208,512 (GRCm39)	missense	possibly damaging	0.95
R6693:Slc16a4	UTSW	3	107,210,380 (GRCm39)	missense	probably damaging	1.00
R6811:Slc16a4	UTSW	3	107,206,233 (GRCm39)	missense	probably benign	0.06
R6823:Slc16a4	UTSW	3	107,218,814 (GRCm39)	missense	probably benign	0.02
R6982:Slc16a4	UTSW	3	107,206,589 (GRCm39)	missense	probably benign	0.01
R7050:Slc16a4	UTSW	3	107,208,148 (GRCm39)	missense	probably benign
R7103:Slc16a4	UTSW	3	107,218,787 (GRCm39)	missense	probably damaging	1.00
R7608:Slc16a4	UTSW	3	107,210,443 (GRCm39)	missense	probably damaging	1.00
R8013:Slc16a4	UTSW	3	107,218,794 (GRCm39)	missense	probably damaging	1.00
R8014:Slc16a4	UTSW	3	107,218,794 (GRCm39)	missense	probably damaging	1.00
R8713:Slc16a4	UTSW	3	107,218,901 (GRCm39)	makesense	probably null
R8876:Slc16a4	UTSW	3	107,208,101 (GRCm39)	missense	probably benign	0.12
R9266:Slc16a4	UTSW	3	107,199,788 (GRCm39)	missense	probably benign	0.10
R9661:Slc16a4	UTSW	3	107,213,359 (GRCm39)	missense	probably benign
X0018:Slc16a4	UTSW	3	107,208,131 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TCCATGAATCTGTCCTGACAC -3'
(R):5'- TACATTACTTCAGCCCTAAAGGAGTG -3'

Sequencing Primer
(F):5'- TAGAGAGGAATGAACTGCTTCTCCC -3'
(R):5'- TTCAGCCCTAAAGGAGTGATGGTG -3'

Posted On

2019-10-24