Incidental Mutation 'R7632:Caprin2'
ID 589692
Institutional Source Beutler Lab
Gene Symbol Caprin2
Ensembl Gene ENSMUSG00000030309
Gene Name caprin family member 2
Synonyms RNG140, C1qdc1, Eeg1
MMRRC Submission 045720-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7632 (G1)
Quality Score 225.009
Status Validated
Chromosome 6
Chromosomal Location 148743990-148797735 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 148784954 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Glycine at position 107 (S107G)
Ref Sequence ENSEMBL: ENSMUSP00000107195 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072324] [ENSMUST00000111569] [ENSMUST00000139914]
AlphaFold Q05A80
Predicted Effect unknown
Transcript: ENSMUST00000072324
AA Change: S107G
SMART Domains Protein: ENSMUSP00000072165
Gene: ENSMUSG00000030309
AA Change: S107G

DomainStartEndE-ValueType
coiled coil region 48 125 N/A INTRINSIC
coiled coil region 239 264 N/A INTRINSIC
Pfam:Caprin-1_C 317 618 1.2e-32 PFAM
C1Q 676 812 1.27e-35 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000111569
AA Change: S107G

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000107195
Gene: ENSMUSG00000030309
AA Change: S107G

DomainStartEndE-ValueType
coiled coil region 48 125 N/A INTRINSIC
coiled coil region 239 264 N/A INTRINSIC
low complexity region 330 344 N/A INTRINSIC
Pfam:Caprin-1_C 536 836 2.9e-106 PFAM
C1Q 895 1031 1.27e-35 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000139914
AA Change: S107G

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000121685
Gene: ENSMUSG00000030309
AA Change: S107G

DomainStartEndE-ValueType
coiled coil region 48 94 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.5%
Validation Efficiency 95% (63/66)
MGI Phenotype FUNCTION: This gene encodes a member of the caprin family. The encoded protein may function as an RNA-binding protein that induces the formation of RNA granules and plays an important role in brain function. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ap2a2 A G 7: 141,211,236 (GRCm39) D924G probably benign Het
Armh1 C A 4: 117,070,938 (GRCm39) A396S probably benign Het
Atrnl1 A G 19: 57,618,738 (GRCm39) D152G probably damaging Het
B3gnt8 A G 7: 25,327,860 (GRCm39) I97V possibly damaging Het
Bach1 A G 16: 87,517,031 (GRCm39) D524G probably benign Het
Ccnb1 A G 13: 100,918,209 (GRCm39) I207T probably benign Het
Cdh11 T C 8: 103,400,515 (GRCm39) D151G probably damaging Het
Cdh9 A G 15: 16,851,115 (GRCm39) probably null Het
Cep83 A T 10: 94,586,502 (GRCm39) R433W probably damaging Het
Cspg4b C A 13: 113,457,420 (GRCm39) S1155R Het
D3Ertd751e A G 3: 41,708,163 (GRCm39) E100G probably benign Het
Dchs2 C T 3: 83,255,357 (GRCm39) A2351V probably benign Het
Dhx40 T C 11: 86,690,263 (GRCm39) T253A probably benign Het
Dqx1 A G 6: 83,036,680 (GRCm39) D228G probably benign Het
Dync1h1 T C 12: 110,627,327 (GRCm39) M4002T probably benign Het
Flcn C T 11: 59,686,625 (GRCm39) W376* probably null Het
Flnc A T 6: 29,446,984 (GRCm39) Y1037F probably damaging Het
Fut11 T A 14: 20,745,096 (GRCm39) V9E probably benign Het
Fv1 T A 4: 147,954,392 (GRCm39) N319K possibly damaging Het
Ghrhr G T 6: 55,361,727 (GRCm39) G298V probably benign Het
Gm5800 T A 14: 51,953,905 (GRCm39) probably null Het
Grin2b A G 6: 135,709,553 (GRCm39) M1331T probably benign Het
Hyou1 A G 9: 44,292,433 (GRCm39) probably null Het
Igkv1-117 C A 6: 68,098,792 (GRCm39) Q114K probably damaging Het
Igkv4-68 A G 6: 69,282,048 (GRCm39) V41A possibly damaging Het
Inpp4b A G 8: 82,772,968 (GRCm39) N754S probably damaging Het
Isl2 G A 9: 55,448,440 (GRCm39) probably null Het
Kat2a G A 11: 100,599,422 (GRCm39) Q523* probably null Het
Lypd3 T C 7: 24,337,865 (GRCm39) F77S possibly damaging Het
Map4k2 T C 19: 6,394,084 (GRCm39) L297P probably benign Het
Naca T C 10: 127,876,375 (GRCm39) V469A unknown Het
Notch3 C T 17: 32,377,480 (GRCm39) V199I probably benign Het
Or4k44 T C 2: 111,368,521 (GRCm39) I38V possibly damaging Het
Or5b119 T C 19: 13,456,795 (GRCm39) M256V possibly damaging Het
Pabpc1 TGTACCTGTTGCATGGTA TGTA 15: 36,598,212 (GRCm39) probably null Het
Pcdhb8 A T 18: 37,488,648 (GRCm39) I109L probably benign Het
Pde2a A G 7: 101,133,801 (GRCm39) D104G possibly damaging Het
Phip A G 9: 82,785,243 (GRCm39) V824A probably benign Het
Plekhg4 T C 8: 106,106,782 (GRCm39) Y853H probably damaging Het
Plod1 T C 4: 148,011,481 (GRCm39) K248R probably damaging Het
Plxnd1 A T 6: 115,953,600 (GRCm39) Y656N probably benign Het
Pogz G A 3: 94,763,517 (GRCm39) probably null Het
Ppp1r3e T A 14: 55,114,526 (GRCm39) S79C probably damaging Het
Pprc1 T A 19: 46,060,721 (GRCm39) D1595E probably damaging Het
Ptprq A G 10: 107,547,783 (GRCm39) V205A probably benign Het
Rad51ap2 T C 12: 11,507,116 (GRCm39) V346A possibly damaging Het
Rgs12 T A 5: 35,122,934 (GRCm39) L239H probably damaging Het
Rrp8 T C 7: 105,385,727 (GRCm39) probably benign Het
Rsf1 GGCG GGCGACCGCCGCG 7: 97,229,113 (GRCm39) probably benign Het
Scaf1 A T 7: 44,656,503 (GRCm39) V792D unknown Het
Scrn2 G T 11: 96,923,968 (GRCm39) R284L possibly damaging Het
Sgsm1 T A 5: 113,423,948 (GRCm39) Q461L possibly damaging Het
Slc18b1 A G 10: 23,702,080 (GRCm39) T434A probably benign Het
Sltm C G 9: 70,493,955 (GRCm39) P802R possibly damaging Het
Smc4 CTA CTATA 3: 68,925,400 (GRCm39) probably benign Het
Snx33 A T 9: 56,833,702 (GRCm39) D122E probably damaging Het
Srebf2 G T 15: 82,069,497 (GRCm39) V680L probably benign Het
Sry GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG Y: 2,662,638 (GRCm39) probably benign Het
Tecpr1 C T 5: 144,155,544 (GRCm39) V5M probably benign Het
Tfg A G 16: 56,532,997 (GRCm39) V54A possibly damaging Het
Tmem237 C T 1: 59,156,060 (GRCm39) C30Y probably benign Het
Tmem245 T C 4: 56,916,787 (GRCm39) K444R probably benign Het
Trim25 T G 11: 88,906,602 (GRCm39) L446R probably null Het
Usp37 T C 1: 74,507,533 (GRCm39) T495A probably benign Het
Vmn1r94 T G 7: 19,901,696 (GRCm39) T203P probably damaging Het
Ywhah T A 5: 33,184,010 (GRCm39) M71K probably benign Het
Other mutations in Caprin2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00236:Caprin2 APN 6 148,744,569 (GRCm39) missense probably damaging 1.00
IGL01364:Caprin2 APN 6 148,774,526 (GRCm39) missense probably benign 0.00
IGL02738:Caprin2 APN 6 148,744,360 (GRCm39) missense probably damaging 1.00
IGL02819:Caprin2 APN 6 148,749,756 (GRCm39) missense probably damaging 0.99
IGL03117:Caprin2 APN 6 148,763,964 (GRCm39) missense possibly damaging 0.91
IGL03123:Caprin2 APN 6 148,796,505 (GRCm39) missense probably damaging 1.00
IGL03378:Caprin2 APN 6 148,779,352 (GRCm39) missense probably benign 0.23
R0242:Caprin2 UTSW 6 148,744,452 (GRCm39) missense probably damaging 1.00
R0242:Caprin2 UTSW 6 148,744,452 (GRCm39) missense probably damaging 1.00
R0621:Caprin2 UTSW 6 148,760,176 (GRCm39) missense possibly damaging 0.94
R0930:Caprin2 UTSW 6 148,785,009 (GRCm39) splice site probably null
R1540:Caprin2 UTSW 6 148,777,969 (GRCm39) missense probably benign 0.01
R1591:Caprin2 UTSW 6 148,774,606 (GRCm39) missense possibly damaging 0.94
R1763:Caprin2 UTSW 6 148,744,619 (GRCm39) missense probably damaging 1.00
R1885:Caprin2 UTSW 6 148,779,383 (GRCm39) splice site probably null
R2027:Caprin2 UTSW 6 148,779,385 (GRCm39) missense probably damaging 0.98
R2867:Caprin2 UTSW 6 148,747,738 (GRCm39) synonymous silent
R4856:Caprin2 UTSW 6 148,774,509 (GRCm39) missense probably benign 0.19
R5580:Caprin2 UTSW 6 148,760,232 (GRCm39) missense possibly damaging 0.79
R5696:Caprin2 UTSW 6 148,779,316 (GRCm39) missense possibly damaging 0.49
R5765:Caprin2 UTSW 6 148,744,666 (GRCm39) missense probably damaging 1.00
R5778:Caprin2 UTSW 6 148,770,820 (GRCm39) missense probably benign
R5961:Caprin2 UTSW 6 148,765,038 (GRCm39) missense probably damaging 1.00
R6255:Caprin2 UTSW 6 148,779,390 (GRCm39) missense probably benign 0.28
R6440:Caprin2 UTSW 6 148,771,143 (GRCm39) missense probably damaging 1.00
R6997:Caprin2 UTSW 6 148,779,474 (GRCm39) missense probably damaging 1.00
R7034:Caprin2 UTSW 6 148,749,703 (GRCm39) missense possibly damaging 0.64
R7344:Caprin2 UTSW 6 148,774,565 (GRCm39) missense probably benign 0.02
R7808:Caprin2 UTSW 6 148,744,528 (GRCm39) missense probably damaging 1.00
R8075:Caprin2 UTSW 6 148,770,590 (GRCm39) missense probably benign 0.03
R8083:Caprin2 UTSW 6 148,744,346 (GRCm39) nonsense probably null
R8128:Caprin2 UTSW 6 148,784,940 (GRCm39) splice site probably null
R8393:Caprin2 UTSW 6 148,770,650 (GRCm39) missense probably benign 0.01
R8839:Caprin2 UTSW 6 148,774,525 (GRCm39) missense probably benign 0.00
R9041:Caprin2 UTSW 6 148,771,030 (GRCm39) missense probably benign 0.03
R9188:Caprin2 UTSW 6 148,767,422 (GRCm39) missense probably benign
R9234:Caprin2 UTSW 6 148,744,337 (GRCm39) nonsense probably null
R9587:Caprin2 UTSW 6 148,770,500 (GRCm39) missense probably benign
R9605:Caprin2 UTSW 6 148,744,332 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CCGAGAGATTAAGAACTGGCC -3'
(R):5'- GCAGGGGAATCACAAGTTTG -3'

Sequencing Primer
(F):5'- GAACTGGCCTGCAAGAACTCTG -3'
(R):5'- TACGGGTAACTAACTGCCTGATG -3'
Posted On 2019-10-24