Mutagenetix > Incidental Mutation

Incidental Mutation 'R7632:Pabpc1'

589722

Institutional Source

Beutler Lab

Gene Symbol

Pabpc1

Ensembl Gene

ENSMUSG00000022283

Gene Name

poly(A) binding protein, cytoplasmic 1

Synonyms

Pabp1, Pabpl1

MMRRC Submission

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.537) question?

Stock #

R7632 (G1)

Quality Score

217.468

Status

Validated

Chromosome

Chromosomal Location

36595661-36609668 bp(-) (GRCm38)

Type of Mutation

frame shift

DNA Base Change (assembly)

TGTACCTGTTGCATGGTA to TGTA at 36597968 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000001809 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001809]

AlphaFold

P29341

Predicted Effect

probably null
Transcript: ENSMUST00000001809

SMART Domains

Protein: ENSMUSP00000001809
Gene: ENSMUSG00000022283

Domain	Start	End	E-Value	Type
RRM	12	85	6.86e-22	SMART
RRM	100	171	2.72e-25	SMART
RRM	192	264	5.39e-29	SMART
RRM	295	366	5.83e-25	SMART
low complexity region	455	462	N/A	INTRINSIC
low complexity region	492	509	N/A	INTRINSIC
PolyA	554	617	6.9e-42	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000155116

SMART Domains

Protein: ENSMUSP00000117063
Gene: ENSMUSG00000022283

Domain	Start	End	E-Value	Type
PolyA	36	99	6.9e-42	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.5%

Validation Efficiency

95% (63/66)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a poly(A) binding protein. The protein shuttles between the nucleus and cytoplasm and binds to the 3' poly(A) tail of eukaryotic messenger RNAs via RNA-recognition motifs. The binding of this protein to poly(A) promotes ribosome recruitment and translation initiation; it is also required for poly(A) shortening which is the first step in mRNA decay. The gene is part of a small gene family including three protein-coding genes and several pseudogenes.[provided by RefSeq, Aug 2010]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ap2a2	A	G	7: 141,631,323	D924G	probably benign	Het
Armh1	C	A	4: 117,213,741	A396S	probably benign	Het
Atrnl1	A	G	19: 57,630,306	D152G	probably damaging	Het
B3gnt8	A	G	7: 25,628,435	I97V	possibly damaging	Het
Bach1	A	G	16: 87,720,143	D524G	probably benign	Het
BC067074	C	A	13: 113,320,886	S1155R		Het
Caprin2	T	C	6: 148,883,456	S107G	probably damaging	Het
Ccnb1	A	G	13: 100,781,701	I207T	probably benign	Het
Cdh11	T	C	8: 102,673,883	D151G	probably damaging	Het
Cdh9	A	G	15: 16,851,029		probably null	Het
Cep83	A	T	10: 94,750,640	R433W	probably damaging	Het
D3Ertd751e	A	G	3: 41,753,728	E100G	probably benign	Het
Dchs2	C	T	3: 83,348,050	A2351V	probably benign	Het
Dhx40	T	C	11: 86,799,437	T253A	probably benign	Het
Dqx1	A	G	6: 83,059,699	D228G	probably benign	Het
Dync1h1	T	C	12: 110,660,893	M4002T	probably benign	Het
Flcn	C	T	11: 59,795,799	W376*	probably null	Het
Flnc	A	T	6: 29,446,985	Y1037F	probably damaging	Het
Fut11	T	A	14: 20,695,028	V9E	probably benign	Het
Fv1	T	A	4: 147,869,935	N319K	possibly damaging	Het
Ghrhr	G	T	6: 55,384,742	G298V	probably benign	Het
Gm5800	T	A	14: 51,716,448		probably null	Het
Grin2b	A	G	6: 135,732,555	M1331T	probably benign	Het
Hyou1	A	G	9: 44,381,136		probably null	Het
Igkv1-117	C	A	6: 68,121,808	Q114K	probably damaging	Het
Igkv4-68	A	G	6: 69,305,064	V41A	possibly damaging	Het
Inpp4b	A	G	8: 82,046,339	N754S	probably damaging	Het
Isl2	G	A	9: 55,541,156		probably null	Het
Kat2a	G	A	11: 100,708,596	Q523*	probably null	Het
Lypd3	T	C	7: 24,638,440	F77S	possibly damaging	Het
Map4k2	T	C	19: 6,344,054	L297P	probably benign	Het
Naca	T	C	10: 128,040,506	V469A	unknown	Het
Notch3	C	T	17: 32,158,506	V199I	probably benign	Het
Olfr1294	T	C	2: 111,538,176	I38V	possibly damaging	Het
Olfr1475	T	C	19: 13,479,431	M256V	possibly damaging	Het
Pcdhb8	A	T	18: 37,355,595	I109L	probably benign	Het
Pde2a	A	G	7: 101,484,594	D104G	possibly damaging	Het
Phip	A	G	9: 82,903,190	V824A	probably benign	Het
Plekhg4	T	C	8: 105,380,150	Y853H	probably damaging	Het
Plod1	T	C	4: 147,927,024	K248R	probably damaging	Het
Plxnd1	A	T	6: 115,976,639	Y656N	probably benign	Het
Pogz	G	A	3: 94,856,206		probably null	Het
Ppp1r3e	T	A	14: 54,877,069	S79C	probably damaging	Het
Pprc1	T	A	19: 46,072,282	D1595E	probably damaging	Het
Ptprq	A	G	10: 107,711,922	V205A	probably benign	Het
Rad51ap2	T	C	12: 11,457,115	V346A	possibly damaging	Het
Rgs12	T	A	5: 34,965,590	L239H	probably damaging	Het
Rrp8	T	C	7: 105,736,520		probably benign	Het
Rsf1	GGCG	GGCGACCGCCGCG	7: 97,579,906		probably benign	Het
Scaf1	A	T	7: 45,007,079	V792D	unknown	Het
Scrn2	G	T	11: 97,033,142	R284L	possibly damaging	Het
Sgsm1	T	A	5: 113,276,082	Q461L	possibly damaging	Het
Slc18b1	A	G	10: 23,826,182	T434A	probably benign	Het
Sltm	C	G	9: 70,586,673	P802R	possibly damaging	Het
Smc4	CTA	CTATA	3: 69,018,067		probably benign	Het
Snx33	A	T	9: 56,926,418	D122E	probably damaging	Het
Srebf2	G	T	15: 82,185,296	V680L	probably benign	Het
Sry	GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG	GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG	Y: 2,662,638		probably benign	Het
Tecpr1	C	T	5: 144,218,726	V5M	probably benign	Het
Tfg	A	G	16: 56,712,634	V54A	possibly damaging	Het
Tmem237	C	T	1: 59,116,901	C30Y	probably benign	Het
Tmem245	T	C	4: 56,916,787	K444R	probably benign	Het
Trim25	T	G	11: 89,015,776	L446R	probably null	Het
Usp37	T	C	1: 74,468,374	T495A	probably benign	Het
Vmn1r94	T	G	7: 20,167,771	T203P	probably damaging	Het
Ywhah	T	A	5: 33,026,666	M71K	probably benign	Het

Other mutations in Pabpc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01602:Pabpc1	APN	15	36599306	missense	probably benign	0.36
IGL01605:Pabpc1	APN	15	36599306	missense	probably benign	0.36
IGL01973:Pabpc1	APN	15	36599275	missense	probably benign	0.13
R0309:Pabpc1	UTSW	15	36597493	missense	possibly damaging	0.93
R0667:Pabpc1	UTSW	15	36598031	missense	probably benign
R0883:Pabpc1	UTSW	15	36599054	unclassified	probably benign
R1682:Pabpc1	UTSW	15	36605541	missense	possibly damaging	0.75
R1749:Pabpc1	UTSW	15	36608340	missense	probably damaging	1.00
R4731:Pabpc1	UTSW	15	36599284	missense	probably benign	0.21
R4732:Pabpc1	UTSW	15	36599284	missense	probably benign	0.21
R4733:Pabpc1	UTSW	15	36599284	missense	probably benign	0.21
R4825:Pabpc1	UTSW	15	36597011	missense	probably damaging	0.98
R5324:Pabpc1	UTSW	15	36600625	missense	probably damaging	1.00
R5328:Pabpc1	UTSW	15	36602877	missense	probably benign	0.03
R5711:Pabpc1	UTSW	15	36605830	missense	probably benign	0.03
R6073:Pabpc1	UTSW	15	36600651	missense	probably damaging	0.97
R6751:Pabpc1	UTSW	15	36597534	missense	possibly damaging	0.71
R8042:Pabpc1	UTSW	15	36598309	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AACCCCATGTGGCACATCTG -3'
(R):5'- ACGAGTCATGTCAACACAGCG -3'

Sequencing Primer
(F):5'- CATCTGTGCTTGAGATGCAATTAC -3'
(R):5'- GGTGAGTCTTAAACCTCTCTGTAAAG -3'

Posted On

2019-10-24