Incidental Mutation 'R7632:Tfg'
ID 589724
Institutional Source Beutler Lab
Gene Symbol Tfg
Ensembl Gene ENSMUSG00000022757
Gene Name Trk-fused gene
Synonyms
MMRRC Submission 045720-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.928) question?
Stock # R7632 (G1)
Quality Score 225.009
Status Validated
Chromosome 16
Chromosomal Location 56690332-56717450 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 56712634 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Valine to Alanine at position 54 (V54A)
Ref Sequence ENSEMBL: ENSMUSP00000067867 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000065515] [ENSMUST00000128551] [ENSMUST00000136394] [ENSMUST00000141404]
AlphaFold Q9Z1A1
Predicted Effect possibly damaging
Transcript: ENSMUST00000065515
AA Change: V54A

PolyPhen 2 Score 0.899 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000067867
Gene: ENSMUSG00000022757
AA Change: V54A

DomainStartEndE-ValueType
PB1 10 91 5.97e-19 SMART
coiled coil region 97 124 N/A INTRINSIC
low complexity region 208 236 N/A INTRINSIC
low complexity region 241 269 N/A INTRINSIC
low complexity region 272 295 N/A INTRINSIC
low complexity region 304 334 N/A INTRINSIC
low complexity region 361 373 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000128551
AA Change: V54A

PolyPhen 2 Score 0.692 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000119561
Gene: ENSMUSG00000022757
AA Change: V54A

DomainStartEndE-ValueType
PB1 10 91 5.97e-19 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000136394
AA Change: V54A

PolyPhen 2 Score 0.692 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000120677
Gene: ENSMUSG00000022757
AA Change: V54A

DomainStartEndE-ValueType
PB1 10 91 5.97e-19 SMART
coiled coil region 97 124 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000141404
AA Change: V54A

PolyPhen 2 Score 0.692 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000117405
Gene: ENSMUSG00000022757
AA Change: V54A

DomainStartEndE-ValueType
PB1 10 89 3.76e-16 SMART
Meta Mutation Damage Score 0.5924 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.5%
Validation Efficiency 95% (63/66)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] There are several documented fusion oncoproteins encoded partially by this gene. This gene also participates in several oncogenic rearrangements resulting in anaplastic lymphoma and mixoid chondrosarcoma, and may play a role in the NF-kappaB pathway. Multiple transcript variants have been found for this gene. [provided by RefSeq, Sep 2010]
Allele List at MGI
Other mutations in this stock
Total: 66 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ap2a2 A G 7: 141,631,323 D924G probably benign Het
Armh1 C A 4: 117,213,741 A396S probably benign Het
Atrnl1 A G 19: 57,630,306 D152G probably damaging Het
B3gnt8 A G 7: 25,628,435 I97V possibly damaging Het
Bach1 A G 16: 87,720,143 D524G probably benign Het
BC067074 C A 13: 113,320,886 S1155R Het
Caprin2 T C 6: 148,883,456 S107G probably damaging Het
Ccnb1 A G 13: 100,781,701 I207T probably benign Het
Cdh11 T C 8: 102,673,883 D151G probably damaging Het
Cdh9 A G 15: 16,851,029 probably null Het
Cep83 A T 10: 94,750,640 R433W probably damaging Het
D3Ertd751e A G 3: 41,753,728 E100G probably benign Het
Dchs2 C T 3: 83,348,050 A2351V probably benign Het
Dhx40 T C 11: 86,799,437 T253A probably benign Het
Dqx1 A G 6: 83,059,699 D228G probably benign Het
Dync1h1 T C 12: 110,660,893 M4002T probably benign Het
Flcn C T 11: 59,795,799 W376* probably null Het
Flnc A T 6: 29,446,985 Y1037F probably damaging Het
Fut11 T A 14: 20,695,028 V9E probably benign Het
Fv1 T A 4: 147,869,935 N319K possibly damaging Het
Ghrhr G T 6: 55,384,742 G298V probably benign Het
Gm5800 T A 14: 51,716,448 probably null Het
Grin2b A G 6: 135,732,555 M1331T probably benign Het
Hyou1 A G 9: 44,381,136 probably null Het
Igkv1-117 C A 6: 68,121,808 Q114K probably damaging Het
Igkv4-68 A G 6: 69,305,064 V41A possibly damaging Het
Inpp4b A G 8: 82,046,339 N754S probably damaging Het
Isl2 G A 9: 55,541,156 probably null Het
Kat2a G A 11: 100,708,596 Q523* probably null Het
Lypd3 T C 7: 24,638,440 F77S possibly damaging Het
Map4k2 T C 19: 6,344,054 L297P probably benign Het
Naca T C 10: 128,040,506 V469A unknown Het
Notch3 C T 17: 32,158,506 V199I probably benign Het
Olfr1294 T C 2: 111,538,176 I38V possibly damaging Het
Olfr1475 T C 19: 13,479,431 M256V possibly damaging Het
Pabpc1 TGTACCTGTTGCATGGTA TGTA 15: 36,597,968 probably null Het
Pcdhb8 A T 18: 37,355,595 I109L probably benign Het
Pde2a A G 7: 101,484,594 D104G possibly damaging Het
Phip A G 9: 82,903,190 V824A probably benign Het
Plekhg4 T C 8: 105,380,150 Y853H probably damaging Het
Plod1 T C 4: 147,927,024 K248R probably damaging Het
Plxnd1 A T 6: 115,976,639 Y656N probably benign Het
Pogz G A 3: 94,856,206 probably null Het
Ppp1r3e T A 14: 54,877,069 S79C probably damaging Het
Pprc1 T A 19: 46,072,282 D1595E probably damaging Het
Ptprq A G 10: 107,711,922 V205A probably benign Het
Rad51ap2 T C 12: 11,457,115 V346A possibly damaging Het
Rgs12 T A 5: 34,965,590 L239H probably damaging Het
Rrp8 T C 7: 105,736,520 probably benign Het
Rsf1 GGCG GGCGACCGCCGCG 7: 97,579,906 probably benign Het
Scaf1 A T 7: 45,007,079 V792D unknown Het
Scrn2 G T 11: 97,033,142 R284L possibly damaging Het
Sgsm1 T A 5: 113,276,082 Q461L possibly damaging Het
Slc18b1 A G 10: 23,826,182 T434A probably benign Het
Sltm C G 9: 70,586,673 P802R possibly damaging Het
Smc4 CTA CTATA 3: 69,018,067 probably benign Het
Snx33 A T 9: 56,926,418 D122E probably damaging Het
Srebf2 G T 15: 82,185,296 V680L probably benign Het
Sry GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG GCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTGGTGGTGGTCATGGAACTGCTGCTTCTGCTG Y: 2,662,638 probably benign Het
Tecpr1 C T 5: 144,218,726 V5M probably benign Het
Tmem237 C T 1: 59,116,901 C30Y probably benign Het
Tmem245 T C 4: 56,916,787 K444R probably benign Het
Trim25 T G 11: 89,015,776 L446R probably null Het
Usp37 T C 1: 74,468,374 T495A probably benign Het
Vmn1r94 T G 7: 20,167,771 T203P probably damaging Het
Ywhah T A 5: 33,026,666 M71K probably benign Het
Other mutations in Tfg
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01402:Tfg APN 16 56694493 splice site probably benign
IGL01404:Tfg APN 16 56694493 splice site probably benign
IGL01548:Tfg APN 16 56701102 missense probably damaging 1.00
trafalgar UTSW 16 56712634 missense possibly damaging 0.90
R0003:Tfg UTSW 16 56690988 missense possibly damaging 0.96
R0003:Tfg UTSW 16 56690988 missense possibly damaging 0.96
R0036:Tfg UTSW 16 56690995 missense probably benign 0.18
R1730:Tfg UTSW 16 56712789 missense probably damaging 1.00
R2025:Tfg UTSW 16 56705625 missense possibly damaging 0.65
R4629:Tfg UTSW 16 56712676 missense probably damaging 1.00
R4676:Tfg UTSW 16 56694491 splice site probably null
R4879:Tfg UTSW 16 56701157 missense probably damaging 1.00
R4916:Tfg UTSW 16 56694396 splice site probably null
R5237:Tfg UTSW 16 56712708 missense possibly damaging 0.80
R5568:Tfg UTSW 16 56701087 missense probably benign 0.14
R5698:Tfg UTSW 16 56701104 missense probably damaging 0.98
R5887:Tfg UTSW 16 56694416 nonsense probably null
R7213:Tfg UTSW 16 56701153 missense probably benign 0.03
R7392:Tfg UTSW 16 56712609 critical splice donor site probably null
R7514:Tfg UTSW 16 56705609 critical splice donor site probably null
R8304:Tfg UTSW 16 56701218 missense possibly damaging 0.87
R9254:Tfg UTSW 16 56705687 missense probably damaging 1.00
R9432:Tfg UTSW 16 56704505 nonsense probably null
Predicted Primers PCR Primer
(F):5'- ACATACATGTGGAAATCTGAGCAG -3'
(R):5'- TGGACTCCACAATGAACGGAC -3'

Sequencing Primer
(F):5'- TGTGAAAATGTCAGACACTCCCTTC -3'
(R):5'- CTCCACAATGAACGGACAGTTGG -3'
Posted On 2019-10-24