Mutagenetix > Incidental Mutation

Incidental Mutation 'R7634:Nadk2'

589832

Institutional Source

Beutler Lab

Gene Symbol

Nadk2

Ensembl Gene

ENSMUSG00000022253

Gene Name

NAD kinase 2, mitochondrial

Synonyms

1110020G09Rik, Nadkd1, MNADK, 4933430B08Rik

MMRRC Submission

045693-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7634 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

9071340-9110584 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 9092935 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 247 (D247E)

Ref Sequence

ENSEMBL: ENSMUSP00000068318 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067760] [ENSMUST00000100789] [ENSMUST00000100790]

AlphaFold

Q8C5H8

Predicted Effect

probably benign
Transcript: ENSMUST00000067760
AA Change: D247E

PolyPhen 2 Score 0.412 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000068318
Gene: ENSMUSG00000022253
AA Change: D247E

Domain	Start	End	E-Value	Type
low complexity region	13	33	N/A	INTRINSIC
Pfam:NAD_kinase	58	334	4.7e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000100789
AA Change: D219E

PolyPhen 2 Score 0.139 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000098353
Gene: ENSMUSG00000022253
AA Change: D219E

Domain	Start	End	E-Value	Type
low complexity region	13	33	N/A	INTRINSIC
Pfam:NAD_kinase	58	171	8.2e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000100790
AA Change: D247E

PolyPhen 2 Score 0.136 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000098354
Gene: ENSMUSG00000022253
AA Change: D247E

Domain	Start	End	E-Value	Type
low complexity region	13	33	N/A	INTRINSIC
Pfam:NAD_kinase	58	312	3.9e-12	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

100% (58/58)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a mitochondrial kinase that catalyzes the phosphorylation of NAD to yield NADP. Mutations in this gene result in 2,4-dienoyl-CoA reductase deficiency. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]
PHENOTYPE: Mice homozygous for knock-out allele exhibit increased serum lysine and carnitine levels, develop increased reactive oxygen species levels and hepatic steatosis on an atherogenic high-fat diet, and show impaired fasting-induced fatty acid oxidation. [provided by MGI curators]

Allele List at MGI

All alleles(10) : Gene trapped(10)

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadat	A	T	8: 60,969,102 (GRCm39)	M116L	probably benign	Het
Adam25	A	G	8: 41,207,883 (GRCm39)	D383G	probably benign	Het
Adam26b	T	A	8: 43,974,034 (GRCm39)	M323L	probably benign	Het
Adgrf3	T	C	5: 30,407,245 (GRCm39)	H227R	probably benign	Het
Antxr1	G	A	6: 87,114,273 (GRCm39)	T498I	probably benign	Het
Arg1	T	A	10: 24,791,627 (GRCm39)	T285S	possibly damaging	Het
Arhgdig	T	C	17: 26,418,365 (GRCm39)	D206G	probably damaging	Het
Asb10	C	A	5: 24,745,875 (GRCm39)	C17F	possibly damaging	Het
Atg2b	T	C	12: 105,618,379 (GRCm39)	D891G	probably damaging	Het
Cacna1h	A	T	17: 25,611,083 (GRCm39)	S572T	possibly damaging	Het
Cenpj	T	C	14: 56,780,257 (GRCm39)	T985A	probably benign	Het
Cfap65	G	T	1: 74,941,593 (GRCm39)	N1780K	probably damaging	Het
Cyp26c1	T	C	19: 37,681,447 (GRCm39)	Y417H	probably damaging	Het
Dnajb13	G	T	7: 100,152,393 (GRCm39)	Q308K	probably benign	Het
Fam107b	T	C	2: 3,771,777 (GRCm39)	S3P	possibly damaging	Het
Gm3127	A	G	14: 15,425,787 (GRCm39)	N64S	probably damaging	Het
Gm4847	A	C	1: 166,460,249 (GRCm39)	N412K	probably benign	Het
Gtf3c3	A	T	1: 54,458,800 (GRCm39)		probably null	Het
Guf1	T	C	5: 69,721,887 (GRCm39)	S349P	probably damaging	Het
Hvcn1	A	G	5: 122,371,586 (GRCm39)	Y42C	probably damaging	Het
Insm1	A	G	2: 146,065,027 (GRCm39)	Y281C	probably damaging	Het
Lrrc71	A	G	3: 87,650,281 (GRCm39)	I264T	probably damaging	Het
Lrriq1	T	C	10: 103,036,462 (GRCm39)	N897S	probably damaging	Het
Mtmr6	T	A	14: 60,533,596 (GRCm39)	F375I	probably damaging	Het
Mtor	G	C	4: 148,536,807 (GRCm39)	S27T	possibly damaging	Het
Mylk4	T	A	13: 32,892,891 (GRCm39)	K387N	possibly damaging	Het
Nfya	T	C	17: 48,699,445 (GRCm39)	T213A	probably damaging	Het
Nlrp1a	A	G	11: 70,990,354 (GRCm39)	V1067A	probably benign	Het
Nrbp2	C	T	15: 75,959,257 (GRCm39)	R206Q	possibly damaging	Het
Oas2	A	G	5: 120,871,293 (GRCm39)	V722A	probably benign	Het
Odad4	G	A	11: 100,452,731 (GRCm39)		probably null	Het
Or4c108	G	T	2: 88,804,001 (GRCm39)	P78Q	probably damaging	Het
Pcdhb2	G	T	18: 37,428,000 (GRCm39)		probably benign	Het
Pdpr	T	A	8: 111,852,317 (GRCm39)	H561Q	probably damaging	Het
Plcz1	A	G	6: 139,961,853 (GRCm39)	F233L	probably damaging	Het
Ppp1r3d	A	G	2: 178,055,165 (GRCm39)	I279T	probably damaging	Het
Psg17	A	G	7: 18,548,416 (GRCm39)	Y452H	probably damaging	Het
Reg4	T	C	3: 98,140,428 (GRCm39)		probably null	Het
Rint1	A	G	5: 24,010,477 (GRCm39)	T229A	probably benign	Het
Robo1	T	G	16: 72,839,866 (GRCm39)		probably null	Het
Slc22a26	A	C	19: 7,779,952 (GRCm39)		probably null	Het
Slc22a7	C	T	17: 46,749,156 (GRCm39)	A54T	probably benign	Het
Slc52a3	C	A	2: 151,846,534 (GRCm39)	T165N	possibly damaging	Het
Slc7a11	C	T	3: 50,378,486 (GRCm39)		probably null	Het
Smap2	T	C	4: 120,873,996 (GRCm39)	N18S	probably benign	Het
Spag6l	T	C	16: 16,595,278 (GRCm39)	E369G	probably damaging	Het
Tars3	T	A	7: 65,325,760 (GRCm39)	Y445N	probably damaging	Het
Tmem161b	C	A	13: 84,370,537 (GRCm39)		probably benign	Het
Tmprss7	C	T	16: 45,483,637 (GRCm39)	G579D	probably benign	Het
Tpi1	T	A	6: 124,789,817 (GRCm39)	K109*	probably null	Het
Ttn	T	C	2: 76,628,856 (GRCm39)	E14466G	possibly damaging	Het
Usp40	A	T	1: 87,890,152 (GRCm39)	C903*	probably null	Het
Vinac1	T	A	2: 128,880,192 (GRCm39)	D578V		Het
Vmn2r104	T	A	17: 20,261,971 (GRCm39)	L386F	possibly damaging	Het
Vmn2r54	G	A	7: 12,349,630 (GRCm39)	P651S	probably damaging	Het
Wnk4	C	A	11: 101,153,721 (GRCm39)	T261K	probably damaging	Het
Wnt2b	T	C	3: 104,854,432 (GRCm39)	Y342C	probably damaging	Het
Zbtb8b	A	G	4: 129,326,755 (GRCm39)	Y137H	probably damaging	Het

Other mutations in Nadk2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01420:Nadk2	APN	15	9,103,072 (GRCm39)	missense	probably damaging	1.00
tabak	UTSW	15	9,108,342 (GRCm39)	missense	probably damaging	0.99
D4043:Nadk2	UTSW	15	9,103,473 (GRCm39)	splice site	probably benign
PIT4131001:Nadk2	UTSW	15	9,100,232 (GRCm39)	frame shift	probably null
PIT4142001:Nadk2	UTSW	15	9,100,232 (GRCm39)	frame shift	probably null
R0347:Nadk2	UTSW	15	9,084,287 (GRCm39)	missense	probably benign	0.08
R0838:Nadk2	UTSW	15	9,091,322 (GRCm39)	missense	probably benign	0.00
R0988:Nadk2	UTSW	15	9,103,080 (GRCm39)	missense	probably damaging	0.99
R1014:Nadk2	UTSW	15	9,091,334 (GRCm39)	missense	probably damaging	1.00
R1159:Nadk2	UTSW	15	9,106,925 (GRCm39)	missense	possibly damaging	0.86
R1387:Nadk2	UTSW	15	9,106,870 (GRCm39)	missense	possibly damaging	0.68
R1861:Nadk2	UTSW	15	9,108,399 (GRCm39)	missense	probably benign	0.21
R1886:Nadk2	UTSW	15	9,103,446 (GRCm39)	missense	possibly damaging	0.87
R2354:Nadk2	UTSW	15	9,085,862 (GRCm39)	missense	probably damaging	1.00
R3623:Nadk2	UTSW	15	9,084,303 (GRCm39)	missense	probably damaging	1.00
R3624:Nadk2	UTSW	15	9,084,303 (GRCm39)	missense	probably damaging	1.00
R4642:Nadk2	UTSW	15	9,092,810 (GRCm39)	missense	possibly damaging	0.64
R4867:Nadk2	UTSW	15	9,098,946 (GRCm39)	missense	possibly damaging	0.84
R5314:Nadk2	UTSW	15	9,108,401 (GRCm39)	missense	probably benign	0.04
R7214:Nadk2	UTSW	15	9,108,342 (GRCm39)	missense	probably damaging	0.99
R7244:Nadk2	UTSW	15	9,083,271 (GRCm39)	splice site	probably null
R7310:Nadk2	UTSW	15	9,103,469 (GRCm39)	critical splice donor site	probably null
R8310:Nadk2	UTSW	15	9,103,420 (GRCm39)	missense	probably benign
R8424:Nadk2	UTSW	15	9,083,414 (GRCm39)	missense	possibly damaging	0.92
R9265:Nadk2	UTSW	15	9,071,774 (GRCm39)	missense	probably damaging	1.00
R9658:Nadk2	UTSW	15	9,103,449 (GRCm39)	nonsense	probably null
R9746:Nadk2	UTSW	15	9,106,824 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TTGCTGAGGCTATCCTAATGTCTATTC -3'
(R):5'- AGATGCTGAGTGATCCTGCC -3'

Sequencing Primer
(F):5'- TATATCTGGAAGGGACTGGC -3'
(R):5'- GCCCCCAAATATTATTTCTGGTTGG -3'

Posted On

2019-10-24