Mutagenetix > Incidental Mutation

Incidental Mutation 'R7637:Vmn1r199'

590026

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r199

Ensembl Gene

ENSMUSG00000069292

Gene Name

vomeronasal 1 receptor 199

Synonyms

V1rh4

MMRRC Submission

045695-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R7637 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

22566708-22567811 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 22566845 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Phenylalanine at position 46 (L46F)

Ref Sequence

ENSEMBL: ENSMUSP00000089326 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000091732] [ENSMUST00000227685] [ENSMUST00000227689] [ENSMUST00000227846]

AlphaFold

Q8R280

Predicted Effect

probably benign
Transcript: ENSMUST00000091732
AA Change: L46F

PolyPhen 2 Score 0.047 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000089326
Gene: ENSMUSG00000069292
AA Change: L46F

Domain	Start	End	E-Value	Type
low complexity region	26	37	N/A	INTRINSIC
Pfam:TAS2R	43	338	3.3e-7	PFAM
Pfam:V1R	75	340	1.6e-33	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000227685
AA Change: L46F

PolyPhen 2 Score 0.047 (Sensitivity: 0.94; Specificity: 0.83)

Predicted Effect

probably benign
Transcript: ENSMUST00000227689
AA Change: L3F

PolyPhen 2 Score 0.047 (Sensitivity: 0.94; Specificity: 0.83)

Predicted Effect

probably benign
Transcript: ENSMUST00000227846
AA Change: L3F

PolyPhen 2 Score 0.047 (Sensitivity: 0.94; Specificity: 0.83)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (51/51)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	T	A	11: 110,109,778 (GRCm39)	Q651L	probably benign	Het
Adam8	C	T	7: 139,565,343 (GRCm39)	V624I	probably damaging	Het
Cltc	T	C	11: 86,621,158 (GRCm39)	H287R	probably damaging	Het
Cmya5	T	C	13: 93,219,720 (GRCm39)	K3243R	possibly damaging	Het
Dock5	G	A	14: 68,023,789 (GRCm39)	T1124M	possibly damaging	Het
Fam8a1	A	T	13: 46,824,723 (GRCm39)	M237L	probably benign	Het
Fars2	G	T	13: 36,388,758 (GRCm39)	K82N	probably benign	Het
Gm40460	ACCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	ACCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAGCCACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG	7: 141,794,450 (GRCm39)		probably benign	Het
Gm57858	T	A	3: 36,101,025 (GRCm39)	Q49L	probably damaging	Het
Gnat3	A	G	5: 18,208,770 (GRCm39)	D158G		Het
Grhl2	A	C	15: 37,328,574 (GRCm39)	N400T	probably damaging	Het
Grin2c	A	T	11: 115,147,085 (GRCm39)		probably null	Het
Hipk4	A	G	7: 27,222,973 (GRCm39)	Y11C	probably damaging	Het
Hspa9	G	T	18: 35,071,740 (GRCm39)	A620E	not run	Het
Igkv12-89	A	G	6: 68,812,083 (GRCm39)	S29P	probably benign	Het
Itga8	A	T	2: 12,113,998 (GRCm39)	D1039E	probably damaging	Het
Itgae	A	T	11: 73,004,457 (GRCm39)	D248V	probably damaging	Het
Kmt2c	T	C	5: 25,520,093 (GRCm39)	K2006E	probably damaging	Het
Litafd	C	T	16: 8,501,510 (GRCm39)	P59L	unknown	Het
Mdga1	C	T	17: 30,051,353 (GRCm39)	G934R	probably benign	Het
Mov10	T	C	3: 104,703,201 (GRCm39)	N896S	probably benign	Het
Ndufb6	A	T	4: 40,273,080 (GRCm39)		probably null	Het
Nlk	T	C	11: 78,481,831 (GRCm39)		probably null	Het
Notch2	T	A	3: 98,053,939 (GRCm39)	S2201T	probably damaging	Het
Or5i1	A	T	2: 87,613,778 (GRCm39)	D298V	probably damaging	Het
Pank1	A	C	19: 34,799,388 (GRCm39)		probably null	Het
Pdlim3	T	C	8: 46,362,102 (GRCm39)	F126S	probably damaging	Het
Pds5a	C	A	5: 65,795,947 (GRCm39)	G648C	probably benign	Het
Plekhh3	T	C	11: 101,055,153 (GRCm39)	I567V	unknown	Het
Ppfia2	T	C	10: 106,701,264 (GRCm39)		probably null	Het
Prl3d1	A	G	13: 27,284,052 (GRCm39)	D207G	probably damaging	Het
Prss23	T	A	7: 89,159,454 (GRCm39)	D205V	probably benign	Het
Pygl	C	T	12: 70,244,569 (GRCm39)		probably null	Het
Qsox2	A	G	2: 26,111,032 (GRCm39)	F111S	probably damaging	Het
Sart3	T	C	5: 113,909,413 (GRCm39)	N95S	probably benign	Het
Scpep1	A	G	11: 88,820,046 (GRCm39)	F414S	probably damaging	Het
Selenbp1	C	A	3: 94,844,659 (GRCm39)	Y105*	probably null	Het
Sirpa	A	G	2: 129,458,365 (GRCm39)	D327G	probably benign	Het
Sowahc	G	A	10: 59,058,005 (GRCm39)	R47H	probably damaging	Het
Szt2	T	C	4: 118,251,025 (GRCm39)	Y361C	probably damaging	Het
Taf3	A	G	2: 9,945,804 (GRCm39)	V600A	probably benign	Het
Tie1	T	C	4: 118,330,175 (GRCm39)	I1042M	probably damaging	Het
Tmem132e	T	A	11: 82,325,342 (GRCm39)	L114Q	probably damaging	Het
Tmx3	A	G	18: 90,555,233 (GRCm39)	T317A	probably damaging	Het
Tppp3	A	G	8: 106,194,924 (GRCm39)	V69A	probably benign	Het
Tpr	T	C	1: 150,299,267 (GRCm39)	Y1156H	probably damaging	Het
Trank1	A	C	9: 111,194,364 (GRCm39)	D796A	possibly damaging	Het
Tsc2	G	A	17: 24,826,466 (GRCm39)	P928S	probably benign	Het
Unc80	G	T	1: 66,711,843 (GRCm39)	V2722F	possibly damaging	Het
Vps13a	A	T	19: 16,727,513 (GRCm39)	H196Q	probably benign	Het
Wnt10a	T	A	1: 74,832,633 (GRCm39)	C75*	probably null	Het
Zfp335	A	G	2: 164,734,459 (GRCm39)		probably null	Het

Other mutations in Vmn1r199

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00930:Vmn1r199	APN	13	22,567,029 (GRCm39)	missense	possibly damaging	0.64
IGL01959:Vmn1r199	APN	13	22,567,290 (GRCm39)	missense	probably benign	0.07
IGL02270:Vmn1r199	APN	13	22,567,176 (GRCm39)	missense	probably damaging	1.00
IGL02687:Vmn1r199	APN	13	22,566,961 (GRCm39)	missense	possibly damaging	0.91
IGL03143:Vmn1r199	APN	13	22,567,299 (GRCm39)	missense	probably damaging	1.00
R0528:Vmn1r199	UTSW	13	22,566,736 (GRCm39)	missense	probably benign
R1411:Vmn1r199	UTSW	13	22,567,671 (GRCm39)	missense	probably benign	0.01
R2075:Vmn1r199	UTSW	13	22,567,435 (GRCm39)	missense	probably damaging	1.00
R5057:Vmn1r199	UTSW	13	22,567,575 (GRCm39)	missense	possibly damaging	0.93
R5824:Vmn1r199	UTSW	13	22,567,748 (GRCm39)	missense	probably benign
R5977:Vmn1r199	UTSW	13	22,567,416 (GRCm39)	missense	probably benign	0.08
R6019:Vmn1r199	UTSW	13	22,566,769 (GRCm39)	missense	possibly damaging	0.85
R6419:Vmn1r199	UTSW	13	22,567,777 (GRCm39)	missense	possibly damaging	0.66
R7624:Vmn1r199	UTSW	13	22,566,906 (GRCm39)	missense	probably benign	0.00
R8505:Vmn1r199	UTSW	13	22,567,317 (GRCm39)	missense	probably benign	0.01
R8692:Vmn1r199	UTSW	13	22,567,809 (GRCm39)	makesense	probably null
R8735:Vmn1r199	UTSW	13	22,567,537 (GRCm39)	missense	probably damaging	1.00
R8791:Vmn1r199	UTSW	13	22,567,687 (GRCm39)	missense	probably damaging	1.00
R9054:Vmn1r199	UTSW	13	22,567,724 (GRCm39)	missense	possibly damaging	0.95
R9258:Vmn1r199	UTSW	13	22,566,822 (GRCm39)	missense	possibly damaging	0.53
R9586:Vmn1r199	UTSW	13	22,567,716 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CCCACAGGAAGAGAGATGTTTC -3'
(R):5'- TGATCTTACAGCCTGAGTCATC -3'

Sequencing Primer
(F):5'- GTTTCTGAAACCTCACATGCAG -3'
(R):5'- AGCTACAATAGTCTTTGGCAGTCC -3'

Posted On

2019-10-24