Mutagenetix > Incidental Mutation

Incidental Mutation 'R7638:Rbm26'

590097

Institutional Source

Beutler Lab

Gene Symbol

Rbm26

Ensembl Gene

ENSMUSG00000022119

Gene Name

RNA binding motif protein 26

Synonyms

1700009P03Rik, Pro1777, C230097K14Rik

MMRRC Submission

045696-MU

Accession Numbers

Genbank: NM_134077; MGI: 1921463

Essential gene?

Possibly essential (E-score: 0.636) question?

Stock #

R7638 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

105106751-105177327 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 105150848 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Asparagine at position 393 (D393N)

Ref Sequence

ENSEMBL: ENSMUSP00000097901 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022715] [ENSMUST00000100327] [ENSMUST00000163499] [ENSMUST00000163545]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000022715
AA Change: D393N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000022715
Gene: ENSMUSG00000022119
AA Change: D393N

Domain	Start	End	E-Value	Type
Pfam:PWI	10	80	1.1e-9	PFAM
low complexity region	102	123	N/A	INTRINSIC
low complexity region	131	186	N/A	INTRINSIC
low complexity region	190	215	N/A	INTRINSIC
ZnF_C3H1	289	315	2.61e-4	SMART
low complexity region	330	389	N/A	INTRINSIC
low complexity region	394	409	N/A	INTRINSIC
RRM	533	602	7.74e-3	SMART
low complexity region	722	735	N/A	INTRINSIC
Blast:RRM_2	753	820	6e-19	BLAST
low complexity region	848	879	N/A	INTRINSIC
RRM	892	956	2.1e-1	SMART
low complexity region	970	1002	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000100327
AA Change: D393N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000097901
Gene: ENSMUSG00000022119
AA Change: D393N

Domain	Start	End	E-Value	Type
Pfam:PWI	10	80	6.1e-10	PFAM
low complexity region	102	123	N/A	INTRINSIC
low complexity region	131	186	N/A	INTRINSIC
low complexity region	190	215	N/A	INTRINSIC
ZnF_C3H1	289	315	2.61e-4	SMART
low complexity region	330	389	N/A	INTRINSIC
low complexity region	394	409	N/A	INTRINSIC
RRM	533	602	7.74e-3	SMART
low complexity region	698	711	N/A	INTRINSIC
Blast:RRM_2	729	796	6e-19	BLAST
low complexity region	824	855	N/A	INTRINSIC
RRM	868	932	2.1e-1	SMART
low complexity region	946	978	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000163499
AA Change: D393N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000128197
Gene: ENSMUSG00000022119
AA Change: D393N

Domain	Start	End	E-Value	Type
Pfam:PWI	10	80	6.2e-10	PFAM
low complexity region	102	123	N/A	INTRINSIC
low complexity region	131	186	N/A	INTRINSIC
low complexity region	190	215	N/A	INTRINSIC
ZnF_C3H1	289	315	2.61e-4	SMART
low complexity region	330	389	N/A	INTRINSIC
low complexity region	394	409	N/A	INTRINSIC
RRM	538	607	7.74e-3	SMART
low complexity region	727	740	N/A	INTRINSIC
Blast:RRM_2	758	825	6e-19	BLAST
low complexity region	853	884	N/A	INTRINSIC
RRM	897	961	2.1e-1	SMART
low complexity region	975	983	N/A	INTRINSIC
low complexity region	986	1001	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000163545
AA Change: D393N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000126414
Gene: ENSMUSG00000022119
AA Change: D393N

Domain	Start	End	E-Value	Type
Pfam:PWI	11	81	1.5e-11	PFAM
low complexity region	102	123	N/A	INTRINSIC
low complexity region	131	186	N/A	INTRINSIC
low complexity region	190	215	N/A	INTRINSIC
ZnF_C3H1	289	315	2.61e-4	SMART
low complexity region	330	389	N/A	INTRINSIC
low complexity region	394	409	N/A	INTRINSIC
RRM	538	607	7.74e-3	SMART
low complexity region	724	737	N/A	INTRINSIC
Blast:RRM_2	755	822	6e-19	BLAST
low complexity region	850	881	N/A	INTRINSIC
RRM	894	958	2.1e-1	SMART
low complexity region	972	1004	N/A	INTRINSIC

Meta Mutation Damage Score

0.1214

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (71/71)

Allele List at MGI

All alleles(33) : Gene trapped(33)

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930563D23Rik	A	G	16: 92,320,917	V161A	probably damaging	Het
Abo	T	G	2: 26,843,843	T115P	probably damaging	Het
Aggf1	G	A	13: 95,356,413	R563*	probably null	Het
Amdhd1	A	T	10: 93,534,498	Y159*	probably null	Het
BC027072	T	C	17: 71,750,885	D599G	probably damaging	Het
C77080	T	C	4: 129,221,941	T1022A	probably benign	Het
Camp	T	C	9: 109,848,393	E124G		Het
Casq2	A	G	3: 102,086,700	E21G	possibly damaging	Het
Cbln1	A	T	8: 87,471,729	F116Y	probably damaging	Het
Cklf	A	T	8: 104,263,364	K143*	probably null	Het
Clca3a1	A	G	3: 144,751,962	I387T	probably damaging	Het
Cndp1	T	A	18: 84,636,049	D130V	probably benign	Het
Cyp4a12a	T	A	4: 115,327,473	M317K	possibly damaging	Het
D13Ertd608e	A	T	13: 119,842,688		probably null	Het
Dmxl2	A	T	9: 54,457,794	I138K	unknown	Het
Eapp	A	G	12: 54,673,723	S236P	probably benign	Het
Efnb3	T	C	11: 69,557,220	H132R	possibly damaging	Het
Fbn2	A	T	18: 58,105,136	N596K	probably damaging	Het
Fzd9	A	G	5: 135,250,630	W134R	probably damaging	Het
Gga2	A	G	7: 122,003,934	S180P	probably damaging	Het
Gm11639	T	A	11: 105,036,799	M4798K	probably benign	Het
Gm30302	G	T	13: 49,786,975	Q420K	probably benign	Het
Golga3	A	G	5: 110,205,828	T911A	probably benign	Het
Gstm1	C	T	3: 108,014,550		probably null	Het
Heg1	A	G	16: 33,727,497	T909A	probably damaging	Het
Herc2	C	T	7: 56,220,525	R4349W	probably damaging	Het
Herc2	T	C	7: 56,157,438	S2455P	probably benign	Het
Hivep2	T	G	10: 14,143,851	M2122R	possibly damaging	Het
Itga10	T	A	3: 96,657,391		probably null	Het
Kbtbd13	G	T	9: 65,391,323	C110*	probably null	Het
Krt78	T	C	15: 101,950,883	E293G	probably damaging	Het
Lgals3bp	C	T	11: 118,398,169	V110M	possibly damaging	Het
Lrp2	A	G	2: 69,477,008		probably null	Het
Lrrc14	A	G	15: 76,713,973	D301G	probably benign	Het
Lrrc71	C	A	3: 87,741,806	G352W	probably damaging	Het
Map3k9	A	G	12: 81,724,732	V694A	probably benign	Het
Mboat2	T	C	12: 24,939,326	S162P	probably damaging	Het
Megf11	C	A	9: 64,679,253	N422K	probably damaging	Het
Miga1	C	T	3: 152,276,687	S584N	probably benign	Het
Mindy2	A	G	9: 70,616,859	Y403H	probably damaging	Het
Mmd	C	T	11: 90,276,757	A204V	possibly damaging	Het
Mta3	A	T	17: 83,800,143	Y262F	probably benign	Het
Ncoa7	G	A	10: 30,722,798	S43F	probably benign	Het
Nphp4	T	C	4: 152,554,534	V874A	probably benign	Het
Nsd1	A	G	13: 55,312,328	T2226A	probably benign	Het
Nt5dc1	T	C	10: 34,314,796	H302R	probably benign	Het
Odc1	A	G	12: 17,550,002	Y389C	probably damaging	Het
Olfr175-ps1	G	A	16: 58,824,595	T38I	probably damaging	Het
Olfr551	A	G	7: 102,587,918	I275T	probably damaging	Het
Olfr970	T	G	9: 39,819,893	F85V	probably damaging	Het
Pcdhb10	A	C	18: 37,412,312	Q147P	probably benign	Het
Pdcl2	A	C	5: 76,317,828	C182G	probably damaging	Het
Pigv	T	C	4: 133,665,451	D136G	possibly damaging	Het
Pramel5	T	C	4: 144,271,440	E411G	possibly damaging	Het
Prkce	T	C	17: 86,168,600	V3A	probably benign	Het
Pth1r	T	C	9: 110,722,393	N546S	probably benign	Het
Qrich2	C	T	11: 116,455,322	V1559I	probably benign	Het
Rbm20	A	C	19: 53,814,333	D424A	possibly damaging	Het
Sf3b3	G	A	8: 110,820,813	R728C	probably damaging	Het
Srcap	A	G	7: 127,538,748	N1090S	probably benign	Het
Syt4	A	T	18: 31,443,822	S160T	probably benign	Het
Tfap2e	C	T	4: 126,721,934	V236M	probably damaging	Het
Thsd4	G	A	9: 60,394,472	T180M	probably damaging	Het
Tlr4	T	A	4: 66,840,206	M412K	probably damaging	Het
Tmem67	T	A	4: 12,079,883	H136L	probably benign	Het
Tnpo2	T	A	8: 85,044,415	I110N	probably benign	Het
Trav13d-3	A	G	14: 53,033,413	M111V	probably benign	Het
Tubb3	A	T	8: 123,421,161	S278C	probably benign	Het
Ugcg	T	A	4: 59,220,299	F364Y	probably benign	Het
Usp17lc	T	C	7: 103,418,499	S334P	probably damaging	Het
Vps13c	A	G	9: 67,945,509	D2357G	probably damaging	Het
Zfp157	T	C	5: 138,455,910	Y125H	probably benign	Het
Zfp747	A	T	7: 127,374,647	M117K	probably benign	Het
Znrd1	A	C	17: 36,957,830		probably null	Het
Zscan4c	A	T	7: 11,009,731	N419I	possibly damaging	Het

Other mutations in Rbm26

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00708:Rbm26	APN	14	105159960	missense	unknown
IGL00948:Rbm26	APN	14	105150343	missense	probably damaging	1.00
IGL01584:Rbm26	APN	14	105131532	missense	probably damaging	0.99
IGL01726:Rbm26	APN	14	105152507	missense	probably damaging	0.99
IGL02095:Rbm26	APN	14	105144260	missense	probably damaging	1.00
IGL03306:Rbm26	APN	14	105151322	missense	probably damaging	0.99
monte	UTSW	14	105142834	missense	probably benign	0.12
D4043:Rbm26	UTSW	14	105152540	missense	possibly damaging	0.59
I0000:Rbm26	UTSW	14	105153567	missense	unknown
R0051:Rbm26	UTSW	14	105152540	missense	possibly damaging	0.95
R0051:Rbm26	UTSW	14	105152540	missense	possibly damaging	0.95
R0243:Rbm26	UTSW	14	105131938	missense	probably benign	0.22
R0738:Rbm26	UTSW	14	105176782	missense	unknown
R1566:Rbm26	UTSW	14	105160544	missense	unknown
R1645:Rbm26	UTSW	14	105150817	missense	probably damaging	1.00
R1789:Rbm26	UTSW	14	105117073	missense	probably benign	0.32
R1809:Rbm26	UTSW	14	105117106	splice site	probably benign
R2144:Rbm26	UTSW	14	105115202	nonsense	probably null
R2321:Rbm26	UTSW	14	105153427	missense	unknown
R2495:Rbm26	UTSW	14	105151312	splice site	probably benign
R2906:Rbm26	UTSW	14	105142834	missense	probably benign	0.12
R2907:Rbm26	UTSW	14	105142834	missense	probably benign	0.12
R2908:Rbm26	UTSW	14	105142834	missense	probably benign	0.12
R3034:Rbm26	UTSW	14	105153445	missense	unknown
R3427:Rbm26	UTSW	14	105131532	missense	probably damaging	0.99
R3818:Rbm26	UTSW	14	105141270	missense	probably damaging	0.99
R3863:Rbm26	UTSW	14	105121068	missense	probably damaging	0.99
R4448:Rbm26	UTSW	14	105151550	missense	probably damaging	0.99
R5022:Rbm26	UTSW	14	105144252	missense	probably damaging	1.00
R5040:Rbm26	UTSW	14	105121016	missense	probably benign	0.05
R5626:Rbm26	UTSW	14	105144231	missense	probably benign	0.43
R5817:Rbm26	UTSW	14	105128603	missense	probably damaging	1.00
R5960:Rbm26	UTSW	14	105150315	missense	probably damaging	1.00
R6318:Rbm26	UTSW	14	105131535	missense	probably damaging	0.99
R6608:Rbm26	UTSW	14	105152498	missense	probably damaging	1.00
R6821:Rbm26	UTSW	14	105116964	intron	probably benign
R7075:Rbm26	UTSW	14	105160607	missense	unknown
R7136:Rbm26	UTSW	14	105144267	missense	possibly damaging	0.88
R7340:Rbm26	UTSW	14	105152540	missense	possibly damaging	0.86
R7431:Rbm26	UTSW	14	105117092	missense	possibly damaging	0.71
R7554:Rbm26	UTSW	14	105160593	missense	unknown
R8192:Rbm26	UTSW	14	105142689	critical splice donor site	probably null
R8536:Rbm26	UTSW	14	105142838	missense	possibly damaging	0.88
R9180:Rbm26	UTSW	14	105153603	missense	unknown
RF004:Rbm26	UTSW	14	105151495	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAAAACATCCTCGTCCTTGGG -3'
(R):5'- AGCTAGCTTACTTGTTAAGAGGTTG -3'

Sequencing Primer
(F):5'- AACATCCTCGTCCTTGGGTGATTTAG -3'
(R):5'- ACTTGTTAAGAGGTTGTTCTTTGTAG -3'

Posted On

2019-10-24