Mutagenetix > Incidental Mutations

Incidental Mutation 'R7645:Tcte1'

590506

Institutional Source

Beutler Lab

Gene Symbol

Tcte1

Ensembl Gene

ENSMUSG00000023949

Gene Name

t-complex-associated testis expressed 1

Synonyms

Tcte-1, D17Sil1

MMRRC Submission

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7645 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

45523434-45542679 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 45534989 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 173 (N173S)

Ref Sequence

ENSEMBL: ENSMUSP00000109175 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000113547]

AlphaFold

A6H639

Predicted Effect

probably benign
Transcript: ENSMUST00000113547
AA Change: N173S

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000109175
Gene: ENSMUSG00000023949
AA Change: N173S

Domain	Start	End	E-Value	Type
low complexity region	6	17	N/A	INTRINSIC
low complexity region	28	47	N/A	INTRINSIC
low complexity region	206	222	N/A	INTRINSIC
Blast:LRR	235	274	7e-14	BLAST
LRR	304	331	5.02e-6	SMART
LRR	332	358	1.28e-3	SMART
LRR	359	386	5.81e-2	SMART
LRR	387	414	2.05e-2	SMART
LRR	415	442	1.13e-4	SMART
Blast:LRR	443	470	3e-8	BLAST

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

98% (46/47)

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actbl2	T	A	13: 111,256,255	C375S	probably benign	Het
Adgrg3	A	G	8: 95,034,764		probably benign	Het
Amn1	C	T	6: 149,185,031	M44I	probably benign	Het
Atg2b	T	C	12: 105,623,430	Y1854C	probably benign	Het
Bcat2	T	A	7: 45,587,963	N290K	probably benign	Het
Ccdc39	T	C	3: 33,825,169		probably null	Het
Cnot10	T	C	9: 114,613,637	S501G	probably benign	Het
Col6a6	A	G	9: 105,767,198		probably null	Het
Coq2	A	C	5: 100,660,250	C228W	probably damaging	Het
Cpt2	A	T	4: 107,906,974	M531K	possibly damaging	Het
Dennd1a	A	G	2: 38,021,363	L204P	probably damaging	Het
Dirc2	T	A	16: 35,734,068		probably null	Het
Dock9	C	T	14: 121,597,663	V1305M	probably benign	Het
Dusp16	A	G	6: 134,725,925	I201T	probably damaging	Het
Esco2	T	C	14: 65,827,181	D370G	probably benign	Het
Fbxl4	T	C	4: 22,377,037	S158P	probably damaging	Het
Fut10	A	G	8: 31,236,204	H329R	possibly damaging	Het
Gm10436	T	C	12: 88,176,258	T392A	probably damaging	Het
Gpr3	A	G	4: 133,211,329	W11R	probably damaging	Het
H2-M3	T	A	17: 37,270,729	I94N	probably damaging	Het
Krt7	T	C	15: 101,412,643	I57T	probably damaging	Het
Ltc4s	T	C	11: 50,238,546		probably benign	Het
Ms4a6b	A	T	19: 11,523,940	T105S	probably damaging	Het
Muc6	T	C	7: 141,648,658	H592R	probably benign	Het
Ncam1	T	C	9: 49,565,003	E262G	probably benign	Het
Olfr1265	T	A	2: 90,037,747	I276K	possibly damaging	Het
Olfr1462	T	C	19: 13,191,573	V302A	probably benign	Het
Plxnb1	T	A	9: 109,114,412	S1908T	probably damaging	Het
Polg2	A	T	11: 106,775,593	M242K	probably benign	Het
Polr3g	T	C	13: 81,694,444	T151A	unknown	Het
Psmb8	T	C	17: 34,200,212	L160P	possibly damaging	Het
Rab5b	G	A	10: 128,681,391	A176V	possibly damaging	Het
Rreb1	T	C	13: 37,931,034	C790R	probably damaging	Het
Rufy3	A	G	5: 88,640,617	T506A	probably benign	Het
Samd11	T	C	4: 156,255,183		probably benign	Het
Slc12a2	T	C	18: 57,896,378	F279L	possibly damaging	Het
Son	TCCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCAGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	TCCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	16: 91,660,295		probably benign	Het
Srgn	C	T	10: 62,494,978	W116*	probably null	Het
Svil	A	G	18: 5,099,663	E1733G	probably damaging	Het
Tbc1d22a	C	T	15: 86,235,541	P49S	probably benign	Het
Tbc1d9	A	T	8: 83,242,553	K490M	probably damaging	Het
Tmco6	C	T	18: 36,735,393	R31W	probably damaging	Het
Ttn	C	A	2: 76,899,681	A5155S	unknown	Het
Tyro3	T	C	2: 119,816,906	Y839H	probably damaging	Het
Zc3h12d	A	G	10: 7,867,576	D370G	probably benign	Het
Zc3h7b	T	C	15: 81,780,602	L554P	probably damaging	Het
Zfp352	C	T	4: 90,224,777	P385S	probably benign	Het

Other mutations in Tcte1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00094:Tcte1	APN	17	45534928	missense	probably damaging	1.00
IGL00945:Tcte1	APN	17	45541189	missense	probably benign	0.15
IGL01120:Tcte1	APN	17	45539668	missense	probably damaging	0.99
IGL01132:Tcte1	APN	17	45539862	missense	possibly damaging	0.93
IGL01884:Tcte1	APN	17	45539809	splice site	probably null
IGL02418:Tcte1	APN	17	45541202	missense	probably benign	0.37
IGL02731:Tcte1	APN	17	45539886	missense	probably benign	0.00
IGL03130:Tcte1	APN	17	45533296	missense	probably damaging	1.00
R0358:Tcte1	UTSW	17	45535285	missense	probably benign	0.34
R1519:Tcte1	UTSW	17	45535252	missense	probably damaging	1.00
R2013:Tcte1	UTSW	17	45541311	missense	probably benign	0.30
R2014:Tcte1	UTSW	17	45541311	missense	probably benign	0.30
R3744:Tcte1	UTSW	17	45539671	missense	probably damaging	0.99
R4250:Tcte1	UTSW	17	45539691	missense	probably benign	0.04
R4976:Tcte1	UTSW	17	45534928	missense	probably damaging	1.00
R5398:Tcte1	UTSW	17	45539826	nonsense	probably null
R6169:Tcte1	UTSW	17	45535070	missense	probably benign	0.01
R6251:Tcte1	UTSW	17	45535159	missense	probably benign
R6279:Tcte1	UTSW	17	45533289	missense	possibly damaging	0.69
R6300:Tcte1	UTSW	17	45533289	missense	possibly damaging	0.69
R6316:Tcte1	UTSW	17	45534860	missense	probably benign
R6417:Tcte1	UTSW	17	45535130	missense	probably damaging	0.97
R6892:Tcte1	UTSW	17	45533157	missense	probably benign
R7047:Tcte1	UTSW	17	45533368	missense	possibly damaging	0.52
R8125:Tcte1	UTSW	17	45539692	missense	possibly damaging	0.88
Z1176:Tcte1	UTSW	17	45535071	missense	probably benign
Z1177:Tcte1	UTSW	17	45535012	missense	possibly damaging	0.93

Predicted Primers

PCR Primer
(F):5'- CGGTGACCGCTAACTTGATTG -3'
(R):5'- TCATGCCACAGTCTTTGACGC -3'

Sequencing Primer
(F):5'- GACCGCTAACTTGATTGACGATG -3'
(R):5'- AGTCTTTGACGCCGTACACCAG -3'

Posted On

2019-10-24