Mutagenetix > Incidental Mutations

Incidental Mutation 'R7650:Syk'

590782

Institutional Source

Beutler Lab

Gene Symbol

Syk

Ensembl Gene

ENSMUSG00000021457

Gene Name

spleen tyrosine kinase

Synonyms

Sykb

MMRRC Submission

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R7650 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

52583173-52648792 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 52611095 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 86 (D86G)

Ref Sequence

ENSEMBL: ENSMUSP00000060828 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055087] [ENSMUST00000118756] [ENSMUST00000120135]

AlphaFold

P48025

Predicted Effect

probably benign
Transcript: ENSMUST00000055087
AA Change: D86G

PolyPhen 2 Score 0.241 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000060828
Gene: ENSMUSG00000021457
AA Change: D86G

Domain	Start	End	E-Value	Type
SH2	12	97	4.51e-26	SMART
SH2	165	249	5.06e-29	SMART
TyrKc	365	620	7.61e-120	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000118756
AA Change: D86G

PolyPhen 2 Score 0.430 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000112914
Gene: ENSMUSG00000021457
AA Change: D86G

Domain	Start	End	E-Value	Type
SH2	12	97	4.51e-26	SMART
SH2	165	249	5.06e-29	SMART
TyrKc	342	582	2.68e-106	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000120135
AA Change: D86G

PolyPhen 2 Score 0.241 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000113852
Gene: ENSMUSG00000021457
AA Change: D86G

Domain	Start	End	E-Value	Type
SH2	12	97	4.51e-26	SMART
SH2	165	249	5.06e-29	SMART
TyrKc	365	620	7.61e-120	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

100% (80/80)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the family of non-receptor type Tyr protein kinases. This protein is widely expressed in hematopoietic cells and is involved in coupling activated immunoreceptors to downstream signaling events that mediate diverse cellular responses, including proliferation, differentiation, and phagocytosis. It is thought to be a modulator of epithelial cell growth and a potential tumour suppressor in human breast carcinomas. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2010]
PHENOTYPE: Homozygous null mice have high rates of postnatal lethality, exhibit developmental defects of B cells, T cells and osteoclasts, and have defective dendritic cell cross-presentation of antigens from necrotic cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2200002J24Rik	G	A	7: 30,699,789	V3I	probably benign	Het
Adam33	T	C	2: 131,061,147	E59G	probably damaging	Het
Akap13	T	A	7: 75,643,454	V45E	probably benign	Het
Ap1s1	A	G	5: 137,045,533	S28P	probably benign	Het
Btnl2	T	C	17: 34,358,129	L86P	probably damaging	Het
Carm1	G	A	9: 21,580,372	V246I	probably benign	Het
Cdk5rap1	C	T	2: 154,354,116	D283N	probably benign	Het
Cfap58	C	A	19: 47,986,528	N709K	possibly damaging	Het
Col24a1	A	G	3: 145,314,453	D195G	probably benign	Het
Dcaf1	A	G	9: 106,838,344	D220G	probably benign	Het
Ddias	C	T	7: 92,858,935	G591R	probably benign	Het
Defb22	A	T	2: 152,486,103	I54K	probably benign	Het
Dennd4b	G	A	3: 90,268,749	W202*	probably null	Het
F2	T	C	2: 91,628,396	N523S	possibly damaging	Het
Fam186a	A	G	15: 99,939,907	Y2819H	unknown	Het
Fanca	A	T	8: 123,268,564		probably null	Het
Fezf2	T	C	14: 12,342,653	H404R	probably damaging	Het
Fry	A	G	5: 150,413,418	N1418S	probably damaging	Het
Gak	A	G	5: 108,584,295	S776P	probably benign	Het
Gbf1	A	G	19: 46,272,539	H1181R	probably damaging	Het
Gdf9	G	A	11: 53,437,098	E294K	probably benign	Het
Gje1	G	A	10: 14,716,424	R205*	probably null	Het
Gm12569	G	A	11: 51,234,786	E179K	possibly damaging	Het
Gm8206	T	C	14: 6,055,211		probably null	Het
Gpr162	T	A	6: 124,861,843		probably benign	Het
Gxylt1	C	T	15: 93,245,658	R363H	probably benign	Het
Hnrnph1	A	T	11: 50,383,899	M396L	probably benign	Het
Ice1	A	G	13: 70,589,797	V2177A	possibly damaging	Het
Ice1	T	A	13: 70,605,483	Q828L	probably damaging	Het
Il10	A	T	1: 131,021,455	T118S	probably benign	Het
Itpr2	C	T	6: 146,233,994	R1813Q	probably benign	Het
Kbtbd12	T	A	6: 88,618,548	Q100L	probably damaging	Het
Kin	A	G	2: 10,092,168	D276G	possibly damaging	Het
Klhl1	T	C	14: 96,346,943	T284A	probably damaging	Het
Kmt2d	C	T	15: 98,850,870	A2858T	unknown	Het
Krt8	G	A	15: 102,004,163	T26M	probably benign	Het
Lama3	T	A	18: 12,537,838	M827K	probably benign	Het
Lingo3	T	C	10: 80,835,763	N111S	probably damaging	Het
Megf10	GGCAGCAACAGCACCAGCAGCAACAGCACCAGCAGCA	GGCAGCAACAGCACCAGCAGCA	18: 57,293,999		probably benign	Het
Metap1	A	G	3: 138,466,367	V263A	probably damaging	Het
Muc5ac	A	G	7: 141,809,422	T2157A	unknown	Het
Myo1d	G	T	11: 80,601,684	H748Q	probably benign	Het
Nfkbiz	A	T	16: 55,817,839	N419K	probably benign	Het
Nol10	T	C	12: 17,362,682		probably null	Het
Nrcam	T	C	12: 44,547,322	L284P	probably damaging	Het
Nrp1	T	A	8: 128,498,014	W753R	possibly damaging	Het
Obscn	A	G	11: 59,060,994	S3978P	probably benign	Het
Olfr181	T	A	16: 58,926,053	R173*	probably null	Het
Olfr968	A	T	9: 39,771,873	F309Y	probably benign	Het
Opa3	C	A	7: 19,244,971	N120K	probably benign	Het
Pabpc1l	T	C	2: 164,049,590	L576S	probably benign	Het
Panx3	A	G	9: 37,661,405	L283S	probably damaging	Het
Pcdhb4	T	A	18: 37,309,614	V659E	probably damaging	Het
Pde4dip	A	T	3: 97,699,107		probably null	Het
Pkd1l3	T	C	8: 109,672,585	V2200A	probably benign	Het
Pkp3	G	A	7: 141,082,370	M112I	probably benign	Het
Prex2	T	C	1: 11,149,854	I683T	possibly damaging	Het
Psg22	C	A	7: 18,726,759	Q438K	possibly damaging	Het
Ptgir	T	C	7: 16,906,951	V56A	possibly damaging	Het
Pus7	G	T	5: 23,760,246	T304K	probably damaging	Het
Rab38	T	C	7: 88,430,429	Y10H	possibly damaging	Het
Ros1	C	T	10: 52,046,209	G2277D	probably benign	Het
Rpain	A	T	11: 70,970,445		probably benign	Het
Shh	C	A	5: 28,458,306	S288I	probably benign	Het
Slc26a5	C	T	5: 21,834,330	V259M	possibly damaging	Het
Slc4a7	G	A	14: 14,773,348	E773K	probably benign	Het
Slit1	T	A	19: 41,629,924	N771I	probably damaging	Het
Stim1	T	A	7: 102,428,827	S179T		Het
Tmem132b	T	G	5: 125,787,010	S727A	probably benign	Het
Trim42	T	A	9: 97,363,148	Y533F	probably benign	Het
Trpm6	A	T	19: 18,876,013	D1799V	possibly damaging	Het
Ttc26	T	A	6: 38,395,040	N188K	probably benign	Het
Ube4a	A	T	9: 44,933,436	I839N	probably damaging	Het
Ugt2b36	A	G	5: 87,080,972	I404T	probably damaging	Het
Ushbp1	T	A	8: 71,390,924	Q290L	possibly damaging	Het
Vcl	T	A	14: 20,995,046	I273K	probably damaging	Het
Vmn2r73	T	A	7: 85,871,939	I274L	probably benign	Het
Zc3h7b	A	G	15: 81,793,650	D945G	possibly damaging	Het
Zfp454	A	G	11: 50,883,753	L31P	probably damaging	Het
Zfp536	C	A	7: 37,569,692	V100L	probably damaging	Het
Zfp942	A	T	17: 21,928,837	S270R	probably benign	Het

Other mutations in Syk

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01478:Syk	APN	13	52624748	missense	probably benign	0.00
IGL01522:Syk	APN	13	52643061	missense	probably benign
IGL01957:Syk	APN	13	52631740	missense	probably benign
IGL01962:Syk	APN	13	52610957	missense	probably damaging	1.00
IGL02613:Syk	APN	13	52643040	missense	probably damaging	0.97
IGL02824:Syk	APN	13	52623283	splice site	probably benign
IGL03130:Syk	APN	13	52622732	missense	probably benign	0.12
Apricot	UTSW	13	52640733	missense	probably damaging	1.00
Poppy	UTSW	13	52640733	missense	probably damaging	1.00
Sisyphus	UTSW	13	52640790	missense	probably damaging	1.00
H8562:Syk	UTSW	13	52640621	missense	probably damaging	1.00
R0091:Syk	UTSW	13	52640733	missense	probably damaging	1.00
R0346:Syk	UTSW	13	52640659	missense	probably damaging	1.00
R1888:Syk	UTSW	13	52640790	missense	probably damaging	1.00
R1888:Syk	UTSW	13	52640790	missense	probably damaging	1.00
R1917:Syk	UTSW	13	52622708	missense	probably damaging	1.00
R2001:Syk	UTSW	13	52611238	missense	probably benign	0.21
R2919:Syk	UTSW	13	52611121	missense	probably benign
R3413:Syk	UTSW	13	52631739	missense	probably benign
R3695:Syk	UTSW	13	52622765	splice site	probably null
R4363:Syk	UTSW	13	52640730	missense	probably damaging	1.00
R4754:Syk	UTSW	13	52612259	intron	probably benign
R4755:Syk	UTSW	13	52641986	missense	probably benign	0.25
R4806:Syk	UTSW	13	52632927	missense	probably benign	0.14
R4817:Syk	UTSW	13	52611206	missense	probably benign	0.03
R4903:Syk	UTSW	13	52611081	missense	probably damaging	1.00
R4997:Syk	UTSW	13	52612448	nonsense	probably null
R5066:Syk	UTSW	13	52641982	missense	possibly damaging	0.49
R5114:Syk	UTSW	13	52611035	missense	probably damaging	1.00
R5267:Syk	UTSW	13	52641926	missense	probably benign	0.05
R5323:Syk	UTSW	13	52631717	missense	probably benign	0.00
R5705:Syk	UTSW	13	52611047	missense	probably benign	0.03
R6190:Syk	UTSW	13	52611053	missense	probably damaging	0.97
R6892:Syk	UTSW	13	52632898	missense	probably benign	0.00
R6932:Syk	UTSW	13	52612459	splice site	probably null
R6977:Syk	UTSW	13	52633058	missense	probably benign	0.00
R7496:Syk	UTSW	13	52612416	missense	probably benign
R8081:Syk	UTSW	13	52638159	missense	probably benign	0.00
R8199:Syk	UTSW	13	52624732	missense	probably benign	0.00
R8350:Syk	UTSW	13	52620899	missense	probably damaging	1.00
R8381:Syk	UTSW	13	52633049	missense	probably benign	0.08
R8420:Syk	UTSW	13	52624727	missense	probably benign	0.02
R8450:Syk	UTSW	13	52620899	missense	probably damaging	1.00
R9177:Syk	UTSW	13	52612444	missense	probably benign	0.37
Z1177:Syk	UTSW	13	52632913	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- AGAGGCTGAAGACTACCTGGTC -3'
(R):5'- GCACAGGCTCTGAATATGTTTAG -3'

Sequencing Primer
(F):5'- TGGTCCAGGGAGGCATGAC -3'
(R):5'- TTAGAGAACTCTGTGGGCTCAAGC -3'

Posted On

2019-10-24