Mutagenetix > Incidental Mutation

Incidental Mutation 'R7652:Setd3'

590937

Institutional Source

Beutler Lab

Gene Symbol

Setd3

Ensembl Gene

ENSMUSG00000056770

Gene Name

SET domain containing 3

Synonyms

D12Ertd771e, 2610102I01Rik, 2610305M23Rik

MMRRC Submission

045729-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7652 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

108072690-108145573 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 108078548 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 311 (I311N)

Ref Sequence

ENSEMBL: ENSMUSP00000066413 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071095] [ENSMUST00000109879] [ENSMUST00000132682] [ENSMUST00000147466]

AlphaFold

Q91WC0

Predicted Effect

probably damaging
Transcript: ENSMUST00000071095
AA Change: I311N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000066413
Gene: ENSMUSG00000056770
AA Change: I311N

Domain	Start	End	E-Value	Type
Pfam:SET	105	314	2.1e-12	PFAM
Pfam:Rubis-subs-bind	345	475	3.7e-31	PFAM
low complexity region	565	577	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000109879

SMART Domains

Protein: ENSMUSP00000105505
Gene: ENSMUSG00000056770

Domain	Start	End	E-Value	Type
Pfam:SET	105	287	6.5e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000132682

SMART Domains

Protein: ENSMUSP00000123159
Gene: ENSMUSG00000056770

Domain	Start	End	E-Value	Type
PDB:3SMT\|A	2	58	3e-30	PDB
SCOP:d1epua_	50	79	6e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000147466

SMART Domains

Protein: ENSMUSP00000121406
Gene: ENSMUSG00000056770

Domain	Start	End	E-Value	Type
PDB:3SMT\|A	2	58	3e-30	PDB
SCOP:d1epua_	50	79	6e-3	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

100% (66/66)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agrn	A	G	4: 156,253,675 (GRCm39)		probably null	Het
Alb	G	C	5: 90,615,214 (GRCm39)	R242P	probably damaging	Het
Anxa2r2	A	T	13: 120,488,529 (GRCm39)	S7T	possibly damaging	Het
Aph1b	T	C	9: 66,691,823 (GRCm39)	T195A	probably benign	Het
Apoe	G	T	7: 19,430,535 (GRCm39)	R236S	possibly damaging	Het
Arap3	G	T	18: 38,111,505 (GRCm39)	T1137K	probably damaging	Het
Arhgap45	C	T	10: 79,864,672 (GRCm39)	A908V	probably benign	Het
Atp13a1	T	C	8: 70,258,209 (GRCm39)	C965R	probably damaging	Het
C7	A	G	15: 5,041,587 (GRCm39)	Y440H	probably damaging	Het
Cacna2d2	T	C	9: 107,401,397 (GRCm39)		probably null	Het
Ddah2	C	A	17: 35,280,026 (GRCm39)	R173S	possibly damaging	Het
Dnajc11	T	C	4: 152,058,682 (GRCm39)	Y337H	probably damaging	Het
Dnajc25	A	G	4: 59,020,483 (GRCm39)	K302R	probably benign	Het
Dnajc6	A	T	4: 101,463,874 (GRCm39)	Q209L	probably damaging	Het
Drosha	G	A	15: 12,859,522 (GRCm39)	V577I	probably benign	Het
Ebf2	G	T	14: 67,628,016 (GRCm39)		probably null	Het
Epx	A	G	11: 87,766,160 (GRCm39)		probably null	Het
Eqtn	T	C	4: 94,816,574 (GRCm39)	Y73C	probably damaging	Het
Fam107b	A	G	2: 3,773,884 (GRCm39)	N21S	probably benign	Het
Fasn	G	A	11: 120,707,154 (GRCm39)	S857F	probably damaging	Het
Fat1	A	G	8: 45,406,336 (GRCm39)	N1029S	probably damaging	Het
Gas8	A	G	8: 124,253,275 (GRCm39)	I208V	probably benign	Het
Gm3269	T	C	14: 16,026,209 (GRCm39)	I88T	probably benign	Het
Gm8005	C	A	14: 42,258,919 (GRCm39)	L136F		Het
Grid2ip	C	A	5: 143,368,393 (GRCm39)	P743Q	probably damaging	Het
H2-T15	A	T	17: 36,367,675 (GRCm39)	V221D	probably damaging	Het
Hbs1l	C	T	10: 21,240,659 (GRCm39)	T626I	probably benign	Het
Hdac3	T	A	18: 38,087,972 (GRCm39)		probably benign	Het
Hnrnpab	T	C	11: 51,496,400 (GRCm39)	Y94C	probably damaging	Het
Homer2	T	C	7: 81,299,414 (GRCm39)	D17G	probably damaging	Het
Ikbke	C	T	1: 131,199,569 (GRCm39)	R308Q	probably damaging	Het
Ints10	A	G	8: 69,277,771 (GRCm39)	T682A	possibly damaging	Het
Klhl3	G	A	13: 58,261,146 (GRCm39)		probably benign	Het
Klk1b9	A	T	7: 43,445,514 (GRCm39)	T235S	probably benign	Het
Kmt2c	T	C	5: 25,520,717 (GRCm39)	T1798A	probably benign	Het
Kri1	TTCCTCCTCCTCCTCCTCCTCCTCCTCCTC	TTCCTCCTCCTCCTCCTCCTCCTCCTC	9: 21,192,352 (GRCm39)		probably benign	Het
Krtap4-6	T	C	11: 99,556,440 (GRCm39)	I96V	unknown	Het
Lef1	A	C	3: 130,994,003 (GRCm39)	R354S	probably damaging	Het
Lrp6	A	T	6: 134,488,208 (GRCm39)	L296*	probably null	Het
Maml2	T	C	9: 13,532,945 (GRCm39)	Y720H		Het
Mmrn1	A	G	6: 60,954,490 (GRCm39)	N924D	probably benign	Het
Myh7b	A	G	2: 155,474,156 (GRCm39)	K1624E	probably damaging	Het
Nos3	T	A	5: 24,588,610 (GRCm39)	V1112D	probably damaging	Het
Or2y14	T	C	11: 49,404,512 (GRCm39)	F16L	probably damaging	Het
Or4c111	C	T	2: 88,843,893 (GRCm39)	V172I	probably benign	Het
Or5an1b	C	A	19: 12,299,651 (GRCm39)	C180F	probably damaging	Het
Or5w13	A	G	2: 87,523,704 (GRCm39)	I174T	probably damaging	Het
Or6c70	A	T	10: 129,710,346 (GRCm39)	N93K	probably damaging	Het
Phospho1	T	C	11: 95,721,645 (GRCm39)	L105S	probably damaging	Het
Prss35	T	A	9: 86,638,023 (GRCm39)	N264K	probably benign	Het
Ptpn13	A	G	5: 103,677,578 (GRCm39)	D732G	probably benign	Het
Rab18	A	T	18: 6,783,123 (GRCm39)	T64S	possibly damaging	Het
Rft1	A	G	14: 30,399,773 (GRCm39)	Q319R	probably benign	Het
Rgs7	T	A	1: 174,921,396 (GRCm39)	M220L	probably benign	Het
Rnf13	A	G	3: 57,671,772 (GRCm39)	N28S	probably benign	Het
Setd5	G	A	6: 113,098,725 (GRCm39)	R786H	probably damaging	Het
Slc26a6	T	C	9: 108,733,143 (GRCm39)		probably null	Het
Slc26a9	A	T	1: 131,691,634 (GRCm39)	T626S	probably benign	Het
Stambp	A	T	6: 83,540,910 (GRCm39)		probably null	Het
Stom	A	T	2: 35,206,041 (GRCm39)	N229K	probably benign	Het
Tlr1	A	T	5: 65,084,130 (GRCm39)	L149*	probably null	Het
Trpc3	C	A	3: 36,692,677 (GRCm39)	V772F	probably benign	Het
Ube3a	A	G	7: 58,893,102 (GRCm39)		probably benign	Het
Ugt2b35	T	A	5: 87,149,369 (GRCm39)	F207I	probably damaging	Het
Usp53	A	T	3: 122,746,884 (GRCm39)	D360E	possibly damaging	Het
Vmn2r96	T	G	17: 18,793,832 (GRCm39)	S59A	probably benign	Het
Wdr70	A	G	15: 8,108,700 (GRCm39)	C149R	probably benign	Het
Wnt3	A	G	11: 103,703,290 (GRCm39)	T258A	possibly damaging	Het
Zfp729b	T	C	13: 67,739,371 (GRCm39)	T965A	probably benign	Het
Zfp764l1	C	T	7: 126,992,496 (GRCm39)	C38Y	probably null	Het

Other mutations in Setd3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00971:Setd3	APN	12	108,126,496 (GRCm39)	missense	probably damaging	1.00
IGL01365:Setd3	APN	12	108,124,165 (GRCm39)	missense	probably damaging	1.00
IGL02031:Setd3	APN	12	108,129,289 (GRCm39)	missense	probably damaging	1.00
IGL02826:Setd3	APN	12	108,078,383 (GRCm39)	unclassified	probably benign
IGL02878:Setd3	APN	12	108,074,814 (GRCm39)	critical splice donor site	probably null
IGL03039:Setd3	APN	12	108,129,229 (GRCm39)	splice site	probably null
R0332:Setd3	UTSW	12	108,073,838 (GRCm39)	missense	probably benign
R1644:Setd3	UTSW	12	108,079,603 (GRCm39)	missense	possibly damaging	0.88
R1776:Setd3	UTSW	12	108,131,420 (GRCm39)	missense	probably damaging	1.00
R2018:Setd3	UTSW	12	108,084,513 (GRCm39)	missense	probably damaging	1.00
R2025:Setd3	UTSW	12	108,126,526 (GRCm39)	missense	probably damaging	1.00
R2041:Setd3	UTSW	12	108,079,651 (GRCm39)	missense	possibly damaging	0.84
R2058:Setd3	UTSW	12	108,073,600 (GRCm39)	missense	probably benign	0.03
R2206:Setd3	UTSW	12	108,073,544 (GRCm39)	missense	probably benign	0.11
R2207:Setd3	UTSW	12	108,073,544 (GRCm39)	missense	probably benign	0.11
R3973:Setd3	UTSW	12	108,131,417 (GRCm39)	missense	possibly damaging	0.93
R3976:Setd3	UTSW	12	108,131,417 (GRCm39)	missense	possibly damaging	0.93
R3978:Setd3	UTSW	12	108,124,201 (GRCm39)	missense	possibly damaging	0.63
R4684:Setd3	UTSW	12	108,074,949 (GRCm39)	missense	probably benign	0.05
R4965:Setd3	UTSW	12	108,079,630 (GRCm39)	missense	probably benign	0.29
R5691:Setd3	UTSW	12	108,126,544 (GRCm39)	missense	probably benign	0.19
R5990:Setd3	UTSW	12	108,126,594 (GRCm39)	missense	probably benign
R6198:Setd3	UTSW	12	108,131,427 (GRCm39)	missense	possibly damaging	0.66
R6241:Setd3	UTSW	12	108,124,114 (GRCm39)	missense	probably benign	0.24
R6428:Setd3	UTSW	12	108,079,597 (GRCm39)	missense	probably damaging	0.99
R7913:Setd3	UTSW	12	108,073,924 (GRCm39)	missense	probably benign	0.37
R8221:Setd3	UTSW	12	108,073,612 (GRCm39)	missense	possibly damaging	0.91
R9585:Setd3	UTSW	12	108,074,814 (GRCm39)	critical splice donor site	probably null
X0052:Setd3	UTSW	12	108,073,924 (GRCm39)	missense	probably benign	0.37

Predicted Primers

PCR Primer
(F):5'- TGGGAATACTACATGCACCAAAG -3'
(R):5'- CACGTTCACCTTCCATGCAG -3'

Sequencing Primer
(F):5'- GGAAGTGCCAAGCCACATTACTG -3'
(R):5'- TGCAGCAGGCTTTAACCAAGTG -3'

Posted On

2019-10-24