Incidental Mutation 'R7658:Prmt6'
ID591323
Institutional Source Beutler Lab
Gene Symbol Prmt6
Ensembl Gene ENSMUSG00000049300
Gene Nameprotein arginine N-methyltransferase 6
SynonymsHrmt1l6
MMRRC Submission
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R7658 (G1)
Quality Score225.009
Status Not validated
Chromosome3
Chromosomal Location110246109-110250998 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to T at 110250385 bp
ZygosityHeterozygous
Amino Acid Change Valine to Glutamic Acid at position 196 (V196E)
Ref Sequence ENSEMBL: ENSMUSP00000140836 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000106567] [ENSMUST00000168412] [ENSMUST00000190378]
Predicted Effect possibly damaging
Transcript: ENSMUST00000106567
AA Change: V196E

PolyPhen 2 Score 0.513 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000102177
Gene: ENSMUSG00000049300
AA Change: V196E

DomainStartEndE-ValueType
low complexity region 15 35 N/A INTRINSIC
Pfam:PRMT5 42 347 5.3e-9 PFAM
Pfam:Met_10 50 206 6.7e-8 PFAM
Pfam:Methyltransf_9 57 218 2.6e-8 PFAM
Pfam:PrmA 70 187 1.6e-10 PFAM
Pfam:MTS 75 189 8.8e-7 PFAM
Pfam:Methyltransf_18 85 191 1.8e-8 PFAM
Pfam:Methyltransf_11 90 188 6.6e-8 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000168412
AA Change: V196E

PolyPhen 2 Score 0.513 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000129801
Gene: ENSMUSG00000049300
AA Change: V196E

DomainStartEndE-ValueType
low complexity region 15 35 N/A INTRINSIC
Pfam:PRMT5 42 347 1.3e-10 PFAM
Pfam:Met_10 51 184 1.2e-7 PFAM
Pfam:Methyltransf_9 57 218 2.6e-8 PFAM
Pfam:PrmA 70 187 1.4e-10 PFAM
Pfam:MTS 75 194 5.8e-8 PFAM
Pfam:Methyltransf_18 85 192 4.2e-13 PFAM
Pfam:Methyltransf_26 86 191 6e-10 PFAM
Pfam:Methyltransf_11 90 188 5.9e-7 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000190378
AA Change: V196E

PolyPhen 2 Score 0.513 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000140836
Gene: ENSMUSG00000049300
AA Change: V196E

DomainStartEndE-ValueType
low complexity region 15 35 N/A INTRINSIC
Pfam:PRMT5 42 347 1.3e-10 PFAM
Pfam:Met_10 51 184 1.2e-7 PFAM
Pfam:Methyltransf_9 57 218 2.6e-8 PFAM
Pfam:PrmA 70 187 1.4e-10 PFAM
Pfam:MTS 75 194 5.8e-8 PFAM
Pfam:Methyltransf_18 85 192 4.2e-13 PFAM
Pfam:Methyltransf_26 86 191 6e-10 PFAM
Pfam:Methyltransf_11 90 188 5.9e-7 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.9%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the arginine N-methyltransferase family, which catalyze the sequential transfer of methyl group from S-adenosyl-L-methionine to the side chain nitrogens of arginine residues within proteins, to form methylated arginine derivatives and S-adenosyl-L-homocysteine. This protein can catalyze both, the formation of omega-N monomethylarginine and asymmetrical dimethylarginine, with a strong preference for the latter. It specifically mediates the asymmetric dimethylation of Arg2 of histone H3, and the methylated form represents a specific tag for epigenetic transcriptional repression. This protein also forms a complex with, and methylates DNA polymerase beta, resulting in stimulation of polymerase activity by enhancing DNA binding and processivity. [provided by RefSeq, Sep 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased mouse embryonic fibroblast proliferation and early cellular replicative senescence. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 95 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110025L11Rik G T 16: 89,063,730 S72Y unknown Het
6430531B16Rik T C 7: 139,976,618 N152S probably benign Het
Abca8b T A 11: 109,935,717 K1568N probably benign Het
Adcy6 T A 15: 98,596,067 Y865F probably benign Het
Adgrf3 A T 5: 30,197,206 V608D probably benign Het
Agbl1 G T 7: 76,766,369 A965S unknown Het
Agbl3 C T 6: 34,832,508 P690L probably benign Het
Akap9 C G 5: 3,968,745 H1109D probably benign Het
Amt A C 9: 108,297,231 H65P probably damaging Het
Ankrd11 T A 8: 122,893,664 T1150S probably benign Het
Arhgap15 A C 2: 44,142,268 H288P probably benign Het
Arhgap39 A T 15: 76,737,417 M328K probably benign Het
Arhgef12 T C 9: 42,992,536 K743R probably damaging Het
Atg2a T G 19: 6,251,263 V789G probably damaging Het
Ccdc54 T C 16: 50,590,481 T141A probably benign Het
Ccng2 C G 5: 93,273,343 S237R probably benign Het
Cdh5 T C 8: 104,129,401 probably null Het
Cdkl3 T C 11: 52,027,182 V404A not run Het
Chrm2 A T 6: 36,523,249 I14F probably benign Het
Cnbp T C 6: 87,845,276 K89E possibly damaging Het
Cntn6 T A 6: 104,650,483 D92E probably benign Het
Col15a1 T C 4: 47,245,591 F114S possibly damaging Het
Csrnp1 A G 9: 119,972,403 F530S probably benign Het
Dcun1d3 C T 7: 119,857,668 V274M probably damaging Het
Dph2 T A 4: 117,890,281 H302L possibly damaging Het
Fam162a A T 16: 36,046,400 Y118* probably null Het
Fam186a A G 15: 99,939,844 Y2840H unknown Het
Fto A G 8: 91,666,322 K466E probably benign Het
Gal T A 19: 3,413,309 Y41F probably damaging Het
Gigyf2 A T 1: 87,419,138 L620F unknown Het
Git2 C T 5: 114,766,489 R123H probably damaging Het
Glud1 A T 14: 34,311,157 E87V probably benign Het
Gm21190 T G 5: 15,527,925 E94A possibly damaging Het
Gm5592 T C 7: 41,288,710 V472A probably benign Het
Gpc5 T A 14: 115,428,208 N481K possibly damaging Het
Gpn2 A G 4: 133,591,376 E304G probably benign Het
Gsdmc2 T C 15: 63,825,054 T423A probably damaging Het
Gucy2e G A 11: 69,226,229 Q789* probably null Het
Gxylt2 T A 6: 100,783,143 V213E probably damaging Het
Ighv1-75 G A 12: 115,834,111 L64F possibly damaging Het
Il17re T C 6: 113,458,982 C30R probably benign Het
Il7 G T 3: 7,604,082 D31E probably benign Het
Ints4 T C 7: 97,529,253 Y687H possibly damaging Het
Kdelr1 T G 7: 45,882,977 V202G probably benign Het
Khnyn C A 14: 55,887,139 Y283* probably null Het
Klf11 T C 12: 24,653,671 V52A probably damaging Het
Klhl7 A G 5: 24,141,286 N310S probably benign Het
Krt27 A T 11: 99,349,486 L202Q possibly damaging Het
Lce1d A G 3: 92,686,047 C20R unknown Het
Lim2 A T 7: 43,433,630 I80F possibly damaging Het
Lrrk2 T A 15: 91,700,358 F326Y possibly damaging Het
Lyst A T 13: 13,730,476 Y3246F possibly damaging Het
Mafb T A 2: 160,366,435 H81L possibly damaging Het
Mfsd5 G A 15: 102,280,877 R228H probably benign Het
Mmp1b A T 9: 7,386,675 F150I possibly damaging Het
Mthfd1 T A 12: 76,270,435 L20Q probably damaging Het
Mxra8 A G 4: 155,842,963 T402A probably benign Het
Ndc80 A T 17: 71,508,663 L376M probably damaging Het
Nsd1 A T 13: 55,277,639 R1536S probably damaging Het
Nup210l C A 3: 90,211,993 H1874Q probably benign Het
Nyap1 T C 5: 137,732,974 H776R probably benign Het
Patj C A 4: 98,688,179 H1773Q probably damaging Het
Pax8 T A 2: 24,436,511 T280S probably benign Het
Pcdhb19 A G 18: 37,498,981 T610A probably damaging Het
Pde2a A G 7: 101,511,581 D919G possibly damaging Het
Pdk2 T A 11: 95,028,965 Y240F probably damaging Het
Peg3 A T 7: 6,709,610 I871N probably damaging Het
Pex1 A T 5: 3,596,244 probably benign Het
Pgm2l1 C T 7: 100,250,328 R50W probably damaging Het
Phkg1 T A 5: 129,865,923 K262N probably damaging Het
Pik3r4 A G 9: 105,644,511 E92G probably damaging Het
Ptprn2 T G 12: 116,722,119 M66R probably benign Het
Rai14 C T 15: 10,593,103 G152R probably damaging Het
Recql5 A T 11: 115,923,276 S348T probably damaging Het
Rfk T G 19: 17,398,682 probably null Het
Selenbp1 A T 3: 94,944,102 M389L probably benign Het
Sipa1l2 G A 8: 125,492,290 R103C probably benign Het
Slc10a6 T A 5: 103,629,190 S15C probably damaging Het
Slc12a2 G T 18: 57,932,524 V944L probably benign Het
Slc16a11 T A 11: 70,215,317 L127Q possibly damaging Het
St6gal1 A G 16: 23,356,228 Y272C probably damaging Het
Stab2 C A 10: 86,981,135 V133F probably benign Het
Stradb G A 1: 58,992,726 V266I probably damaging Het
Tmem150b A G 7: 4,720,759 W140R probably benign Het
Tnnt3 A T 7: 142,512,096 K157* probably null Het
Trove2 T C 1: 143,770,873 T45A probably damaging Het
Ttn T G 2: 76,723,769 K30863N probably damaging Het
Vldlr G A 19: 27,243,136 R592H probably benign Het
Vmn1r12 A T 6: 57,158,898 probably benign Het
Vmn2r63 A C 7: 42,925,269 S519R probably damaging Het
Zbtb22 G C 17: 33,918,497 E539Q probably damaging Het
Zbtb44 G A 9: 31,054,079 A262T probably benign Het
Zfp280d A T 9: 72,324,072 N455I probably damaging Het
Zfp287 T C 11: 62,725,263 N201D probably damaging Het
Zfp988 T C 4: 147,332,294 L395P probably damaging Het
Other mutations in Prmt6
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0029:Prmt6 UTSW 3 110249898 missense probably benign 0.16
R0928:Prmt6 UTSW 3 110250682 missense probably damaging 1.00
R1672:Prmt6 UTSW 3 110250571 missense possibly damaging 0.79
R1748:Prmt6 UTSW 3 110250367 missense probably benign
R3765:Prmt6 UTSW 3 110250194 nonsense probably null
R3835:Prmt6 UTSW 3 110250805 missense possibly damaging 0.75
R4027:Prmt6 UTSW 3 110249941 missense probably damaging 0.99
R6236:Prmt6 UTSW 3 110249898 missense probably benign 0.16
R7164:Prmt6 UTSW 3 110250364 missense probably benign
R7821:Prmt6 UTSW 3 110250987 start gained probably benign
R8178:Prmt6 UTSW 3 110250824 missense probably damaging 1.00
R8546:Prmt6 UTSW 3 110250718 missense possibly damaging 0.67
Z1176:Prmt6 UTSW 3 110250130 missense probably benign 0.22
Predicted Primers PCR Primer
(F):5'- GTCACTTGAAACCAGACGGC -3'
(R):5'- TCAGCATCTTCTGTGCCCAG -3'

Sequencing Primer
(F):5'- CGGAACCATAGCAGCTGCAG -3'
(R):5'- TCAACGGGTTGGAGGACC -3'
Posted On2019-11-12