Mutagenetix > Incidental Mutation

Incidental Mutation 'R7658:Mmp1b'

591364

Institutional Source

Beutler Lab

Gene Symbol

Mmp1b

Ensembl Gene

ENSMUSG00000041620

Gene Name

matrix metallopeptidase 1b (interstitial collagenase)

Synonyms

Mcol-B

MMRRC Submission

045703-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.070) question?

Stock #

R7658 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

7368239-7388047 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 7386675 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Isoleucine at position 150 (F150I)

Ref Sequence

ENSEMBL: ENSMUSP00000047261 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047888]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000047888
AA Change: F150I

PolyPhen 2 Score 0.586 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000047261
Gene: ENSMUSG00000041620
AA Change: F150I

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
Pfam:PG_binding_1	26	84	1.4e-13	PFAM
ZnMc	102	260	3.08e-46	SMART
HX	281	323	4.39e-2	SMART
HX	325	369	3.51e-10	SMART
HX	374	421	1.03e-16	SMART
HX	423	463	1.6e0	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.9%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a member of the matrix metalloproteinase family of extracellular matrix-degrading enzymes that are involved in tissue remodeling, wound repair, progression of atherosclerosis and tumor invasion. The encoded preproprotein undergoes proteolytic processing to generate a mature, zinc-dependent endopeptidase enzyme. This gene is located in a cluster of other matrix metalloproteinase genes on chromosome 9. [provided by RefSeq, Feb 2016]

Allele List at MGI

Other mutations in this stock

Total: 95 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110025L11Rik	G	T	16: 88,860,618 (GRCm39)	S72Y	unknown	Het
Abca8b	T	A	11: 109,826,543 (GRCm39)	K1568N	probably benign	Het
Adcy6	T	A	15: 98,493,948 (GRCm39)	Y865F	probably benign	Het
Adgrf3	A	T	5: 30,402,204 (GRCm39)	V608D	probably benign	Het
Agbl1	G	T	7: 76,416,117 (GRCm39)	A965S	unknown	Het
Agbl3	C	T	6: 34,809,443 (GRCm39)	P690L	probably benign	Het
Akap9	C	G	5: 4,018,745 (GRCm39)	H1109D	probably benign	Het
Amt	A	C	9: 108,174,430 (GRCm39)	H65P	probably damaging	Het
Ankrd11	T	A	8: 123,620,403 (GRCm39)	T1150S	probably benign	Het
Arhgap15	A	C	2: 44,032,280 (GRCm39)	H288P	probably benign	Het
Arhgap39	A	T	15: 76,621,617 (GRCm39)	M328K	probably benign	Het
Arhgef12	T	C	9: 42,903,832 (GRCm39)	K743R	probably damaging	Het
Atg2a	T	G	19: 6,301,293 (GRCm39)	V789G	probably damaging	Het
Ccdc54	T	C	16: 50,410,844 (GRCm39)	T141A	probably benign	Het
Ccng2	C	G	5: 93,421,202 (GRCm39)	S237R	probably benign	Het
Cdh5	T	C	8: 104,856,033 (GRCm39)		probably null	Het
Cdkl3	T	C	11: 51,918,009 (GRCm39)	V404A	not run	Het
Chrm2	A	T	6: 36,500,184 (GRCm39)	I14F	probably benign	Het
Cnbp	T	C	6: 87,822,258 (GRCm39)	K89E	possibly damaging	Het
Cntn6	T	A	6: 104,627,444 (GRCm39)	D92E	probably benign	Het
Col15a1	T	C	4: 47,245,591 (GRCm39)	F114S	possibly damaging	Het
Csrnp1	A	G	9: 119,801,469 (GRCm39)	F530S	probably benign	Het
Dcun1d3	C	T	7: 119,456,891 (GRCm39)	V274M	probably damaging	Het
Dph2	T	A	4: 117,747,478 (GRCm39)	H302L	possibly damaging	Het
Fam162a	A	T	16: 35,866,770 (GRCm39)	Y118*	probably null	Het
Fam186a	A	G	15: 99,837,725 (GRCm39)	Y2840H	unknown	Het
Fto	A	G	8: 92,392,950 (GRCm39)	K466E	probably benign	Het
Gal	T	A	19: 3,463,309 (GRCm39)	Y41F	probably damaging	Het
Gigyf2	A	T	1: 87,346,860 (GRCm39)	L620F	unknown	Het
Git2	C	T	5: 114,904,550 (GRCm39)	R123H	probably damaging	Het
Glud1	A	T	14: 34,033,114 (GRCm39)	E87V	probably benign	Het
Gm21190	T	G	5: 15,732,923 (GRCm39)	E94A	possibly damaging	Het
Gm5592	T	C	7: 40,938,134 (GRCm39)	V472A	probably benign	Het
Gpc5	T	A	14: 115,665,620 (GRCm39)	N481K	possibly damaging	Het
Gpn2	A	G	4: 133,318,687 (GRCm39)	E304G	probably benign	Het
Gsdmc2	T	C	15: 63,696,903 (GRCm39)	T423A	probably damaging	Het
Gucy2e	G	A	11: 69,117,055 (GRCm39)	Q789*	probably null	Het
Gxylt2	T	A	6: 100,760,104 (GRCm39)	V213E	probably damaging	Het
Ighv1-75	G	A	12: 115,797,731 (GRCm39)	L64F	possibly damaging	Het
Il17re	T	C	6: 113,435,943 (GRCm39)	C30R	probably benign	Het
Il7	G	T	3: 7,669,142 (GRCm39)	D31E	probably benign	Het
Ints4	T	C	7: 97,178,460 (GRCm39)	Y687H	possibly damaging	Het
Kdelr1	T	G	7: 45,532,401 (GRCm39)	V202G	probably benign	Het
Khnyn	C	A	14: 56,124,596 (GRCm39)	Y283*	probably null	Het
Klf11	T	C	12: 24,703,670 (GRCm39)	V52A	probably damaging	Het
Klhl7	A	G	5: 24,346,284 (GRCm39)	N310S	probably benign	Het
Krt27	A	T	11: 99,240,312 (GRCm39)	L202Q	possibly damaging	Het
Lce1d	A	G	3: 92,593,354 (GRCm39)	C20R	unknown	Het
Lim2	A	T	7: 43,083,054 (GRCm39)	I80F	possibly damaging	Het
Lrrk2	T	A	15: 91,584,561 (GRCm39)	F326Y	possibly damaging	Het
Lyst	A	T	13: 13,905,061 (GRCm39)	Y3246F	possibly damaging	Het
Mafb	T	A	2: 160,208,355 (GRCm39)	H81L	possibly damaging	Het
Mfsd5	G	A	15: 102,189,312 (GRCm39)	R228H	probably benign	Het
Mthfd1	T	A	12: 76,317,209 (GRCm39)	L20Q	probably damaging	Het
Mxra8	A	G	4: 155,927,420 (GRCm39)	T402A	probably benign	Het
Ndc80	A	T	17: 71,815,658 (GRCm39)	L376M	probably damaging	Het
Nsd1	A	T	13: 55,425,452 (GRCm39)	R1536S	probably damaging	Het
Nup210l	C	A	3: 90,119,300 (GRCm39)	H1874Q	probably benign	Het
Nyap1	T	C	5: 137,731,236 (GRCm39)	H776R	probably benign	Het
Patj	C	A	4: 98,576,416 (GRCm39)	H1773Q	probably damaging	Het
Pax8	T	A	2: 24,326,523 (GRCm39)	T280S	probably benign	Het
Pcdhb19	A	G	18: 37,632,034 (GRCm39)	T610A	probably damaging	Het
Pde2a	A	G	7: 101,160,788 (GRCm39)	D919G	possibly damaging	Het
Pdk2	T	A	11: 94,919,791 (GRCm39)	Y240F	probably damaging	Het
Peg3	A	T	7: 6,712,609 (GRCm39)	I871N	probably damaging	Het
Pex1	A	T	5: 3,646,244 (GRCm39)		probably benign	Het
Pgm2l1	C	T	7: 99,899,535 (GRCm39)	R50W	probably damaging	Het
Phkg1	T	A	5: 129,894,764 (GRCm39)	K262N	probably damaging	Het
Pik3r4	A	G	9: 105,521,710 (GRCm39)	E92G	probably damaging	Het
Prmt6	A	T	3: 110,157,701 (GRCm39)	V196E	possibly damaging	Het
Ptprn2	T	G	12: 116,685,739 (GRCm39)	M66R	probably benign	Het
Rai14	C	T	15: 10,593,189 (GRCm39)	G152R	probably damaging	Het
Recql5	A	T	11: 115,814,102 (GRCm39)	S348T	probably damaging	Het
Rfk	T	G	19: 17,376,046 (GRCm39)		probably null	Het
Ro60	T	C	1: 143,646,611 (GRCm39)	T45A	probably damaging	Het
Selenbp1	A	T	3: 94,851,413 (GRCm39)	M389L	probably benign	Het
Sipa1l2	G	A	8: 126,219,029 (GRCm39)	R103C	probably benign	Het
Slc10a6	T	A	5: 103,777,056 (GRCm39)	S15C	probably damaging	Het
Slc12a2	G	T	18: 58,065,596 (GRCm39)	V944L	probably benign	Het
Slc16a11	T	A	11: 70,106,143 (GRCm39)	L127Q	possibly damaging	Het
Spef1l	T	C	7: 139,556,531 (GRCm39)	N152S	probably benign	Het
St6gal1	A	G	16: 23,174,978 (GRCm39)	Y272C	probably damaging	Het
Stab2	C	A	10: 86,816,999 (GRCm39)	V133F	probably benign	Het
Stradb	G	A	1: 59,031,885 (GRCm39)	V266I	probably damaging	Het
Tmem150b	A	G	7: 4,723,758 (GRCm39)	W140R	probably benign	Het
Tnnt3	A	T	7: 142,065,833 (GRCm39)	K157*	probably null	Het
Ttn	T	G	2: 76,554,113 (GRCm39)	K30863N	probably damaging	Het
Vldlr	G	A	19: 27,220,536 (GRCm39)	R592H	probably benign	Het
Vmn1r12	A	T	6: 57,135,883 (GRCm39)		probably benign	Het
Vmn2r63	A	C	7: 42,574,693 (GRCm39)	S519R	probably damaging	Het
Zbtb22	G	C	17: 34,137,471 (GRCm39)	E539Q	probably damaging	Het
Zbtb44	G	A	9: 30,965,375 (GRCm39)	A262T	probably benign	Het
Zfp280d	A	T	9: 72,231,354 (GRCm39)	N455I	probably damaging	Het
Zfp287	T	C	11: 62,616,089 (GRCm39)	N201D	probably damaging	Het
Zfp988	T	C	4: 147,416,751 (GRCm39)	L395P	probably damaging	Het

Other mutations in Mmp1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00163:Mmp1b	APN	9	7,387,946 (GRCm39)	missense	probably benign	0.00
IGL00339:Mmp1b	APN	9	7,368,304 (GRCm39)	missense	probably benign	0.19
IGL00832:Mmp1b	APN	9	7,387,023 (GRCm39)	missense	possibly damaging	0.81
IGL01110:Mmp1b	APN	9	7,384,921 (GRCm39)	missense	probably benign	0.02
IGL02121:Mmp1b	APN	9	7,384,935 (GRCm39)	missense	probably benign	0.22
IGL02143:Mmp1b	APN	9	7,386,400 (GRCm39)	missense	probably benign	0.10
IGL02698:Mmp1b	APN	9	7,384,877 (GRCm39)	missense	probably damaging	1.00
IGL02928:Mmp1b	APN	9	7,368,242 (GRCm39)	makesense	probably null
IGL03218:Mmp1b	APN	9	7,387,907 (GRCm39)	missense	probably benign	0.07
IGL03304:Mmp1b	APN	9	7,384,701 (GRCm39)	missense	probably damaging	1.00
IGL02802:Mmp1b	UTSW	9	7,384,709 (GRCm39)	missense	probably benign	0.08
R0122:Mmp1b	UTSW	9	7,386,689 (GRCm39)	missense	probably damaging	0.99
R0506:Mmp1b	UTSW	9	7,387,013 (GRCm39)	missense	possibly damaging	0.52
R0600:Mmp1b	UTSW	9	7,387,947 (GRCm39)	missense	possibly damaging	0.55
R1454:Mmp1b	UTSW	9	7,386,693 (GRCm39)	missense	probably damaging	1.00
R1466:Mmp1b	UTSW	9	7,384,779 (GRCm39)	splice site	probably benign
R1696:Mmp1b	UTSW	9	7,386,699 (GRCm39)	missense	probably damaging	0.99
R1837:Mmp1b	UTSW	9	7,386,409 (GRCm39)	missense	probably damaging	1.00
R1986:Mmp1b	UTSW	9	7,368,577 (GRCm39)	missense	probably benign	0.01
R2031:Mmp1b	UTSW	9	7,368,607 (GRCm39)	missense	possibly damaging	0.68
R2098:Mmp1b	UTSW	9	7,386,984 (GRCm39)	missense	probably benign	0.03
R2107:Mmp1b	UTSW	9	7,369,310 (GRCm39)	missense	probably damaging	1.00
R2847:Mmp1b	UTSW	9	7,370,763 (GRCm39)	missense	probably benign	0.05
R2870:Mmp1b	UTSW	9	7,386,875 (GRCm39)	synonymous	silent
R3944:Mmp1b	UTSW	9	7,384,708 (GRCm39)	missense	possibly damaging	0.73
R4654:Mmp1b	UTSW	9	7,370,849 (GRCm39)	missense	probably benign	0.18
R4829:Mmp1b	UTSW	9	7,370,729 (GRCm39)	critical splice donor site	probably null
R5329:Mmp1b	UTSW	9	7,384,897 (GRCm39)	missense	possibly damaging	0.61
R5332:Mmp1b	UTSW	9	7,384,897 (GRCm39)	missense	possibly damaging	0.61
R5333:Mmp1b	UTSW	9	7,384,897 (GRCm39)	missense	possibly damaging	0.61
R5418:Mmp1b	UTSW	9	7,384,897 (GRCm39)	missense	possibly damaging	0.61
R5419:Mmp1b	UTSW	9	7,384,897 (GRCm39)	missense	possibly damaging	0.61
R5420:Mmp1b	UTSW	9	7,384,897 (GRCm39)	missense	possibly damaging	0.61
R6053:Mmp1b	UTSW	9	7,385,031 (GRCm39)	missense	probably benign	0.07
R6394:Mmp1b	UTSW	9	7,386,316 (GRCm39)	missense	probably benign	0.20
R6774:Mmp1b	UTSW	9	7,387,914 (GRCm39)	missense	probably benign	0.00
R6842:Mmp1b	UTSW	9	7,384,888 (GRCm39)	missense	probably damaging	1.00
R7092:Mmp1b	UTSW	9	7,386,981 (GRCm39)	missense	probably damaging	1.00
R7146:Mmp1b	UTSW	9	7,385,014 (GRCm39)	missense	probably damaging	1.00
R7549:Mmp1b	UTSW	9	7,384,753 (GRCm39)	missense	probably benign	0.21
R8952:Mmp1b	UTSW	9	7,386,346 (GRCm39)	missense	possibly damaging	0.81
R9036:Mmp1b	UTSW	9	7,387,909 (GRCm39)	missense	probably null	0.25
R9349:Mmp1b	UTSW	9	7,369,271 (GRCm39)	missense	probably benign	0.01
Z1177:Mmp1b	UTSW	9	7,369,322 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- AGTCAATGTTCTTCCATCCATTGTG -3'
(R):5'- TCCTCGTTGGACCAAAACAC -3'

Sequencing Primer
(F):5'- ATTGTGATACTACTTTCCTCTTCGG -3'
(R):5'- GTCACAACGGGGGCATATCTATAC -3'

Posted On

2019-11-12