Incidental Mutation 'R0239:Scai'
ID 59196
Institutional Source Beutler Lab
Gene Symbol Scai
Ensembl Gene ENSMUSG00000035236
Gene Name suppressor of cancer cell invasion
Synonyms A930041I02Rik
MMRRC Submission 038477-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.533) question?
Stock # R0239 (G1)
Quality Score 204
Status Validated
Chromosome 2
Chromosomal Location 38956226-39080746 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 38965054 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Phenylalanine at position 597 (I597F)
Ref Sequence ENSEMBL: ENSMUSP00000037194 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038874] [ENSMUST00000204093] [ENSMUST00000204404] [ENSMUST00000204500]
AlphaFold Q8C8N2
Predicted Effect probably benign
Transcript: ENSMUST00000038874
AA Change: I597F

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000037194
Gene: ENSMUSG00000035236
AA Change: I597F

DomainStartEndE-ValueType
Pfam:DUF3550 64 557 6.1e-216 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000204093
SMART Domains Protein: ENSMUSP00000145133
Gene: ENSMUSG00000035236

DomainStartEndE-ValueType
Pfam:DUF3550 64 480 2.5e-177 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000204404
Predicted Effect probably benign
Transcript: ENSMUST00000204500
SMART Domains Protein: ENSMUSP00000144844
Gene: ENSMUSG00000035236

DomainStartEndE-ValueType
Pfam:DUF3550 1 77 3.2e-23 PFAM
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 99.0%
  • 10x: 97.9%
  • 20x: 96.2%
Validation Efficiency 98% (81/83)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a regulator of cell migration. The encoded protein appears to function in the RhoA (ras homolog gene family, member A)-Dia1 (diaphanous homolog 1) signal transduction pathway. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2010]
PHENOTYPE: Homozygous mice of both sexes are sub-fertile owing to compromised meiotic synapsis and homologous recombination-mediated double-strand break DNA repair. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adra1d C A 2: 131,388,134 (GRCm39) V474F probably benign Het
Alg8 A T 7: 97,032,891 (GRCm39) probably null Het
Ash1l A G 3: 88,974,529 (GRCm39) D2618G possibly damaging Het
Atp6v1c2 C A 12: 17,344,676 (GRCm39) probably null Het
Cacna1d A G 14: 29,845,453 (GRCm39) V572A probably benign Het
Camta1 A G 4: 151,228,187 (GRCm39) W882R probably damaging Het
Cd72 A G 4: 43,453,163 (GRCm39) V91A probably benign Het
Cdh12 T C 15: 21,586,493 (GRCm39) W771R probably damaging Het
Cdx2 G T 5: 147,240,097 (GRCm39) T193K probably damaging Het
Cfap70 A C 14: 20,498,673 (GRCm39) S5A probably benign Het
Chmp7 A G 14: 69,958,446 (GRCm39) V241A probably damaging Het
Col4a1 C T 8: 11,268,780 (GRCm39) probably benign Het
D3Ertd751e A G 3: 41,708,313 (GRCm39) Y150C probably damaging Het
Depdc5 T C 5: 33,100,584 (GRCm39) S832P probably damaging Het
Dnhd1 A G 7: 105,370,738 (GRCm39) S4673G probably benign Het
Dock4 G T 12: 40,787,539 (GRCm39) S818I probably damaging Het
Dysf C T 6: 84,041,461 (GRCm39) Q156* probably null Het
Elp1 C A 4: 56,784,596 (GRCm39) V466L probably benign Het
Espnl T C 1: 91,250,009 (GRCm39) V52A probably damaging Het
Flcn T C 11: 59,691,902 (GRCm39) N249S probably benign Het
Gemin6 C A 17: 80,533,139 (GRCm39) A24D probably damaging Het
Gm5773 A G 3: 93,681,339 (GRCm39) H337R probably benign Het
Greb1l C T 18: 10,458,567 (GRCm39) probably benign Het
Hal T C 10: 93,339,344 (GRCm39) S478P possibly damaging Het
Hectd1 T A 12: 51,816,101 (GRCm39) M1324L possibly damaging Het
Hyal5 T A 6: 24,876,343 (GRCm39) L72Q probably damaging Het
Ift140 C A 17: 25,264,497 (GRCm39) C557* probably null Het
Il4ra T C 7: 125,174,371 (GRCm39) probably benign Het
Ipo9 A G 1: 135,332,074 (GRCm39) probably benign Het
Irag2 G A 6: 145,117,704 (GRCm39) probably benign Het
Kbtbd3 G T 9: 4,330,144 (GRCm39) V173L possibly damaging Het
Kif14 A G 1: 136,455,131 (GRCm39) E1551G probably damaging Het
Klc1 A G 12: 111,751,758 (GRCm39) probably benign Het
Krt17 G A 11: 100,151,704 (GRCm39) R30* probably null Het
Lamb3 A T 1: 193,003,361 (GRCm39) D100V probably damaging Het
Map2 A G 1: 66,455,265 (GRCm39) D1385G probably damaging Het
Mettl25 C T 10: 105,662,386 (GRCm39) V195I probably damaging Het
Micu2 G A 14: 58,154,835 (GRCm39) probably benign Het
Mrrf T C 2: 36,067,293 (GRCm39) probably benign Het
Myh8 A G 11: 67,192,518 (GRCm39) T1466A probably benign Het
Myo3b T A 2: 69,935,769 (GRCm39) C61S probably benign Het
Nacc2 T G 2: 25,952,273 (GRCm39) N361T probably damaging Het
Nf1 A T 11: 79,309,400 (GRCm39) K438M possibly damaging Het
Nipal4 A G 11: 46,041,268 (GRCm39) V309A possibly damaging Het
Nomo1 T C 7: 45,729,018 (GRCm39) probably null Het
Nubp2 T C 17: 25,103,445 (GRCm39) E144G probably damaging Het
Nwd2 A T 5: 63,957,467 (GRCm39) I266F probably benign Het
Or12e7 T C 2: 87,288,381 (GRCm39) F291L probably benign Het
Or2ag1b A G 7: 106,288,462 (GRCm39) Y159H probably benign Het
Or52s1 G A 7: 102,861,933 (GRCm39) V289M possibly damaging Het
Orc1 T C 4: 108,452,843 (GRCm39) probably null Het
Otogl T A 10: 107,642,557 (GRCm39) N1291I probably damaging Het
Pah C T 10: 87,403,143 (GRCm39) P173S possibly damaging Het
Pga5 A G 19: 10,646,817 (GRCm39) Y305H probably damaging Het
Plekha4 A G 7: 45,181,782 (GRCm39) H62R probably damaging Het
Plxnd1 G T 6: 115,945,754 (GRCm39) D906E probably benign Het
Ppfia4 T C 1: 134,256,927 (GRCm39) E98G possibly damaging Het
Ptk2 A T 15: 73,215,132 (GRCm39) probably null Het
Pzp C T 6: 128,466,119 (GRCm39) probably benign Het
Raet1c C A 10: 22,056,761 (GRCm39) H112Q possibly damaging Het
Scgb1b2 T A 7: 30,991,155 (GRCm39) probably benign Het
Sec31b G A 19: 44,513,908 (GRCm39) probably benign Het
Sirpd A G 3: 15,361,661 (GRCm39) L163P probably damaging Het
Slc35c2 C T 2: 165,122,757 (GRCm39) G176S probably damaging Het
Slc35f4 A T 14: 49,541,713 (GRCm39) I347N possibly damaging Het
Slc49a3 G T 5: 108,591,882 (GRCm39) probably benign Het
Slc52a3 T C 2: 151,850,076 (GRCm39) *461Q probably null Het
Slc6a1 G A 6: 114,279,761 (GRCm39) V142I probably benign Het
Tbc1d31 C A 15: 57,804,149 (GRCm39) T388N probably benign Het
Tmem131 T C 1: 36,867,131 (GRCm39) probably benign Het
Tmem63c T C 12: 87,122,413 (GRCm39) W404R probably damaging Het
Tmem79 A G 3: 88,240,628 (GRCm39) S107P probably benign Het
Trip11 C T 12: 101,850,987 (GRCm39) E741K probably damaging Het
Trpm5 G T 7: 142,636,695 (GRCm39) T414N probably damaging Het
Tsnaxip1 T A 8: 106,571,120 (GRCm39) I660N possibly damaging Het
Ube2q2 T C 9: 55,070,291 (GRCm39) S78P probably damaging Het
Vac14 A T 8: 111,362,007 (GRCm39) probably null Het
Vps51 G T 19: 6,121,467 (GRCm39) S185* probably null Het
Zfp11 C T 5: 129,735,302 (GRCm39) G53E possibly damaging Het
Zfp532 A T 18: 65,816,056 (GRCm39) I810F possibly damaging Het
Zfp599 C T 9: 22,161,055 (GRCm39) C370Y probably damaging Het
Other mutations in Scai
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00434:Scai APN 2 38,998,406 (GRCm39) missense probably damaging 1.00
IGL01366:Scai APN 2 38,996,973 (GRCm39) missense probably benign 0.36
IGL01739:Scai APN 2 38,984,803 (GRCm39) splice site probably benign
IGL02251:Scai APN 2 38,989,429 (GRCm39) missense probably benign 0.01
IGL02274:Scai APN 2 38,992,329 (GRCm39) unclassified probably benign
R0239:Scai UTSW 2 38,965,054 (GRCm39) missense probably benign 0.00
R0685:Scai UTSW 2 38,993,749 (GRCm39) missense probably damaging 0.96
R0904:Scai UTSW 2 38,965,164 (GRCm39) missense possibly damaging 0.90
R1655:Scai UTSW 2 38,970,129 (GRCm39) missense possibly damaging 0.79
R1820:Scai UTSW 2 38,996,990 (GRCm39) missense possibly damaging 0.82
R1913:Scai UTSW 2 38,970,093 (GRCm39) missense probably damaging 1.00
R2068:Scai UTSW 2 39,013,025 (GRCm39) missense probably damaging 1.00
R2183:Scai UTSW 2 38,970,138 (GRCm39) missense probably benign 0.00
R3237:Scai UTSW 2 39,040,326 (GRCm39) splice site probably benign
R3933:Scai UTSW 2 38,965,064 (GRCm39) missense probably benign 0.44
R5460:Scai UTSW 2 38,973,586 (GRCm39) missense probably damaging 1.00
R5460:Scai UTSW 2 38,973,585 (GRCm39) missense probably damaging 1.00
R6089:Scai UTSW 2 38,973,566 (GRCm39) nonsense probably null
R6377:Scai UTSW 2 38,992,340 (GRCm39) missense probably benign 0.02
R6606:Scai UTSW 2 38,965,147 (GRCm39) missense probably benign 0.00
R7034:Scai UTSW 2 39,011,147 (GRCm39) missense probably damaging 1.00
R7037:Scai UTSW 2 39,080,633 (GRCm39) missense probably benign 0.04
R7171:Scai UTSW 2 38,996,948 (GRCm39) missense possibly damaging 0.48
R7451:Scai UTSW 2 39,015,148 (GRCm39) missense probably damaging 1.00
R7737:Scai UTSW 2 39,013,034 (GRCm39) missense probably damaging 0.96
R8856:Scai UTSW 2 38,996,978 (GRCm39) missense probably benign 0.01
R8890:Scai UTSW 2 39,040,400 (GRCm39) intron probably benign
R9040:Scai UTSW 2 38,965,164 (GRCm39) missense probably benign 0.30
Predicted Primers PCR Primer
(F):5'- CCAGACACTTCCAGGTCCAAGTTTAAC -3'
(R):5'- GCCAAGTAATTTCCTCGCAGCAC -3'

Sequencing Primer
(F):5'- CCAGGTCCAAGTTTAACTTATGG -3'
(R):5'- TCGCAGCACTCTGTGAAC -3'
Posted On 2013-07-11