Incidental Mutation 'IGL00327:Lysmd3'
ID 5920
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Lysmd3
Ensembl Gene ENSMUSG00000035840
Gene Name LysM, putative peptidoglycan-binding, domain containing 3
Synonyms 1110030H10Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.106) question?
Stock # IGL00327
Quality Score
Status
Chromosome 13
Chromosomal Location 81805782-81820990 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 81813197 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Phenylalanine at position 22 (L22F)
Ref Sequence ENSEMBL: ENSMUSP00000038275 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000049055] [ENSMUST00000224300] [ENSMUST00000224592]
AlphaFold Q99LE3
Predicted Effect probably benign
Transcript: ENSMUST00000049055
AA Change: L22F

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000038275
Gene: ENSMUSG00000035840
AA Change: L22F

DomainStartEndE-ValueType
LysM 66 110 4.6e-4 SMART
low complexity region 149 158 N/A INTRINSIC
transmembrane domain 214 236 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000224300
AA Change: L22F

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000224420
Predicted Effect probably benign
Transcript: ENSMUST00000224592
AA Change: L22F

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 26 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Atg16l2 A G 7: 100,949,367 (GRCm39) L60S probably damaging Het
Aup1 A G 6: 83,033,390 (GRCm39) E267G probably damaging Het
Bpi T C 2: 158,116,764 (GRCm39) probably benign Het
Brinp2 A G 1: 158,074,670 (GRCm39) Y484H probably benign Het
Colq C T 14: 31,257,545 (GRCm39) probably null Het
Cubn T C 2: 13,431,867 (GRCm39) D1242G possibly damaging Het
Dclre1c T A 2: 3,434,821 (GRCm39) L95* probably null Het
Fry C T 5: 150,263,869 (GRCm39) R171* probably null Het
Krt23 T C 11: 99,383,610 (GRCm39) E94G probably damaging Het
Krt6b T G 15: 101,588,267 (GRCm39) Q131P probably benign Het
Lonp1 A G 17: 56,926,265 (GRCm39) L414P probably damaging Het
Lrit2 T A 14: 36,793,920 (GRCm39) M328K probably benign Het
Map3k20 A G 2: 72,242,514 (GRCm39) D388G probably damaging Het
Mrpl44 C T 1: 79,758,721 (GRCm39) L290F probably benign Het
Nell1 A G 7: 49,770,421 (GRCm39) H160R probably damaging Het
Nlrc3 T C 16: 3,773,030 (GRCm39) N109S probably damaging Het
Prpf40a T C 2: 53,040,700 (GRCm39) T553A probably benign Het
Ptpn23 G T 9: 110,217,174 (GRCm39) T894K probably benign Het
Scgb2b27 A G 7: 33,712,771 (GRCm39) C24R probably damaging Het
Sipa1l3 G T 7: 29,053,558 (GRCm39) H140N probably damaging Het
Slc22a23 T G 13: 34,489,228 (GRCm39) D219A probably damaging Het
Slc9a7 T C X: 20,005,158 (GRCm39) Y557C probably damaging Het
Slco1a1 A T 6: 141,854,851 (GRCm39) I600N probably damaging Het
Tmx2 T C 2: 84,503,643 (GRCm39) N190S probably benign Het
Tpr T G 1: 150,299,447 (GRCm39) probably benign Het
Yme1l1 T C 2: 23,082,512 (GRCm39) V501A probably benign Het
Other mutations in Lysmd3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00326:Lysmd3 APN 13 81,813,363 (GRCm39) missense probably damaging 1.00
IGL00813:Lysmd3 APN 13 81,813,361 (GRCm39) missense probably damaging 1.00
R1509:Lysmd3 UTSW 13 81,817,390 (GRCm39) missense probably benign 0.11
R2158:Lysmd3 UTSW 13 81,817,737 (GRCm39) missense probably damaging 1.00
R4170:Lysmd3 UTSW 13 81,817,529 (GRCm39) nonsense probably null
R4720:Lysmd3 UTSW 13 81,817,584 (GRCm39) missense possibly damaging 0.81
R5120:Lysmd3 UTSW 13 81,817,311 (GRCm39) missense probably damaging 1.00
R5728:Lysmd3 UTSW 13 81,817,380 (GRCm39) missense probably damaging 1.00
R5979:Lysmd3 UTSW 13 81,813,393 (GRCm39) splice site probably null
R5990:Lysmd3 UTSW 13 81,817,707 (GRCm39) missense probably damaging 1.00
R8223:Lysmd3 UTSW 13 81,817,386 (GRCm39) missense
R9013:Lysmd3 UTSW 13 81,817,580 (GRCm39) missense probably damaging 1.00
Posted On 2012-04-20