Incidental Mutation 'IGL00327:Lysmd3'
ID |
5920 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Lysmd3
|
Ensembl Gene |
ENSMUSG00000035840 |
Gene Name |
LysM, putative peptidoglycan-binding, domain containing 3 |
Synonyms |
1110030H10Rik |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.106)
|
Stock # |
IGL00327
|
Quality Score |
|
Status
|
|
Chromosome |
13 |
Chromosomal Location |
81805782-81820990 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to T
at 81813197 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Phenylalanine
at position 22
(L22F)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000038275
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000049055]
[ENSMUST00000224300]
[ENSMUST00000224592]
|
AlphaFold |
Q99LE3 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000049055
AA Change: L22F
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
SMART Domains |
Protein: ENSMUSP00000038275 Gene: ENSMUSG00000035840 AA Change: L22F
Domain | Start | End | E-Value | Type |
LysM
|
66 |
110 |
4.6e-4 |
SMART |
low complexity region
|
149 |
158 |
N/A |
INTRINSIC |
transmembrane domain
|
214 |
236 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000224300
AA Change: L22F
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000224420
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000224592
AA Change: L22F
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 26 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Atg16l2 |
A |
G |
7: 100,949,367 (GRCm39) |
L60S |
probably damaging |
Het |
Aup1 |
A |
G |
6: 83,033,390 (GRCm39) |
E267G |
probably damaging |
Het |
Bpi |
T |
C |
2: 158,116,764 (GRCm39) |
|
probably benign |
Het |
Brinp2 |
A |
G |
1: 158,074,670 (GRCm39) |
Y484H |
probably benign |
Het |
Colq |
C |
T |
14: 31,257,545 (GRCm39) |
|
probably null |
Het |
Cubn |
T |
C |
2: 13,431,867 (GRCm39) |
D1242G |
possibly damaging |
Het |
Dclre1c |
T |
A |
2: 3,434,821 (GRCm39) |
L95* |
probably null |
Het |
Fry |
C |
T |
5: 150,263,869 (GRCm39) |
R171* |
probably null |
Het |
Krt23 |
T |
C |
11: 99,383,610 (GRCm39) |
E94G |
probably damaging |
Het |
Krt6b |
T |
G |
15: 101,588,267 (GRCm39) |
Q131P |
probably benign |
Het |
Lonp1 |
A |
G |
17: 56,926,265 (GRCm39) |
L414P |
probably damaging |
Het |
Lrit2 |
T |
A |
14: 36,793,920 (GRCm39) |
M328K |
probably benign |
Het |
Map3k20 |
A |
G |
2: 72,242,514 (GRCm39) |
D388G |
probably damaging |
Het |
Mrpl44 |
C |
T |
1: 79,758,721 (GRCm39) |
L290F |
probably benign |
Het |
Nell1 |
A |
G |
7: 49,770,421 (GRCm39) |
H160R |
probably damaging |
Het |
Nlrc3 |
T |
C |
16: 3,773,030 (GRCm39) |
N109S |
probably damaging |
Het |
Prpf40a |
T |
C |
2: 53,040,700 (GRCm39) |
T553A |
probably benign |
Het |
Ptpn23 |
G |
T |
9: 110,217,174 (GRCm39) |
T894K |
probably benign |
Het |
Scgb2b27 |
A |
G |
7: 33,712,771 (GRCm39) |
C24R |
probably damaging |
Het |
Sipa1l3 |
G |
T |
7: 29,053,558 (GRCm39) |
H140N |
probably damaging |
Het |
Slc22a23 |
T |
G |
13: 34,489,228 (GRCm39) |
D219A |
probably damaging |
Het |
Slc9a7 |
T |
C |
X: 20,005,158 (GRCm39) |
Y557C |
probably damaging |
Het |
Slco1a1 |
A |
T |
6: 141,854,851 (GRCm39) |
I600N |
probably damaging |
Het |
Tmx2 |
T |
C |
2: 84,503,643 (GRCm39) |
N190S |
probably benign |
Het |
Tpr |
T |
G |
1: 150,299,447 (GRCm39) |
|
probably benign |
Het |
Yme1l1 |
T |
C |
2: 23,082,512 (GRCm39) |
V501A |
probably benign |
Het |
|
Other mutations in Lysmd3 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00326:Lysmd3
|
APN |
13 |
81,813,363 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL00813:Lysmd3
|
APN |
13 |
81,813,361 (GRCm39) |
missense |
probably damaging |
1.00 |
R1509:Lysmd3
|
UTSW |
13 |
81,817,390 (GRCm39) |
missense |
probably benign |
0.11 |
R2158:Lysmd3
|
UTSW |
13 |
81,817,737 (GRCm39) |
missense |
probably damaging |
1.00 |
R4170:Lysmd3
|
UTSW |
13 |
81,817,529 (GRCm39) |
nonsense |
probably null |
|
R4720:Lysmd3
|
UTSW |
13 |
81,817,584 (GRCm39) |
missense |
possibly damaging |
0.81 |
R5120:Lysmd3
|
UTSW |
13 |
81,817,311 (GRCm39) |
missense |
probably damaging |
1.00 |
R5728:Lysmd3
|
UTSW |
13 |
81,817,380 (GRCm39) |
missense |
probably damaging |
1.00 |
R5979:Lysmd3
|
UTSW |
13 |
81,813,393 (GRCm39) |
splice site |
probably null |
|
R5990:Lysmd3
|
UTSW |
13 |
81,817,707 (GRCm39) |
missense |
probably damaging |
1.00 |
R8223:Lysmd3
|
UTSW |
13 |
81,817,386 (GRCm39) |
missense |
|
|
R9013:Lysmd3
|
UTSW |
13 |
81,817,580 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2012-04-20 |