Mutagenetix > Incidental Mutation

Incidental Mutation 'R7671:Leo1'

592165

Institutional Source

Beutler Lab

Gene Symbol

Leo1

Ensembl Gene

ENSMUSG00000042487

Gene Name

Leo1, Paf1/RNA polymerase II complex component

Synonyms

LOC235497

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7671 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

75441524-75466432 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 75445562 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Arginine at position 129 (H129R)

Ref Sequence

ENSEMBL: ENSMUSP00000046905 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048937]

AlphaFold

Q5XJE5

Predicted Effect

probably benign
Transcript: ENSMUST00000048937
AA Change: H129R

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000046905
Gene: ENSMUSG00000042487
AA Change: H129R

Domain	Start	End	E-Value	Type
low complexity region	10	30	N/A	INTRINSIC
low complexity region	33	43	N/A	INTRINSIC
low complexity region	64	78	N/A	INTRINSIC
internal_repeat_1	82	160	7.97e-7	PROSPERO
internal_repeat_1	177	253	7.97e-7	PROSPERO
low complexity region	255	269	N/A	INTRINSIC
low complexity region	317	330	N/A	INTRINSIC
low complexity region	345	356	N/A	INTRINSIC
Pfam:Leo1	375	537	5.8e-58	PFAM
low complexity region	578	584	N/A	INTRINSIC
low complexity region	608	618	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] LEO1, parafibromin (CDC73; MIM 607393), CTR9 (MIM 609366), and PAF1 (MIM 610506) form the PAF protein complex that associates with the RNA polymerase II subunit POLR2A (MIM 180660) and with a histone methyltransferase complex (Rozenblatt-Rosen et al., 2005 [PubMed 15632063]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610009O20Rik	T	A	18: 38,259,925 (GRCm38)	I394N	probably damaging	Het
4930435E12Rik	C	T	16: 38,828,091 (GRCm38)	D219N	possibly damaging	Het
4932438A13Rik	T	C	3: 36,943,231 (GRCm38)	F1146L	probably damaging	Het
4933406M09Rik	T	C	1: 134,390,062 (GRCm38)	C191R	probably benign	Het
Akap13	C	A	7: 75,569,900 (GRCm38)	T17K	probably damaging	Het
Ankrd29	T	A	18: 12,260,986 (GRCm38)	K257I	probably damaging	Het
Bicc1	A	G	10: 70,957,167 (GRCm38)	L219P	probably benign	Het
Boc	C	T	16: 44,491,849 (GRCm38)	V617M		Het
Ccl8	A	G	11: 82,115,207 (GRCm38)		probably benign	Het
Col18a1	A	G	10: 77,085,383 (GRCm38)	L261P	unknown	Het
Col5a3	T	A	9: 20,775,086 (GRCm38)		probably null	Het
Cryba4	A	C	5: 112,248,173 (GRCm38)		probably null	Het
Csf2rb	A	G	15: 78,338,930 (GRCm38)	Y114C	probably damaging	Het
Ctif	T	C	18: 75,472,016 (GRCm38)	D484G	probably damaging	Het
Ctnnal1	A	G	4: 56,837,848 (GRCm38)	F261L	probably damaging	Het
Defb22	A	T	2: 152,486,030 (GRCm38)	N78K	unknown	Het
Efr3a	G	A	15: 65,837,434 (GRCm38)		probably null	Het
Elp4	G	T	2: 105,904,481 (GRCm38)	A3E	probably damaging	Het
Emilin2	A	G	17: 71,273,910 (GRCm38)	V607A	probably benign	Het
Epsti1	A	G	14: 77,904,490 (GRCm38)	Y2C	probably damaging	Het
Fam81b	A	C	13: 76,271,293 (GRCm38)	L46R	probably damaging	Het
Fam81b	G	T	13: 76,271,294 (GRCm38)	L46I	possibly damaging	Het
Fbxo15	T	A	18: 84,964,153 (GRCm38)	H288Q	probably damaging	Het
Gabrg1	T	A	5: 70,815,980 (GRCm38)	N77I	probably damaging	Het
Ganab	A	G	19: 8,912,852 (GRCm38)	Y715C	possibly damaging	Het
Hist3h2ba	T	C	11: 58,949,276 (GRCm38)	S113P	possibly damaging	Het
Iqgap2	T	C	13: 95,628,119 (GRCm38)	D1539G	probably damaging	Het
Kcp	T	C	6: 29,496,517 (GRCm38)	N633S	probably benign	Het
Krt6a	C	A	15: 101,690,543 (GRCm38)	S529I	unknown	Het
Lmf1	G	A	17: 25,579,349 (GRCm38)	V55M	possibly damaging	Het
Mcm9	A	G	10: 53,537,569 (GRCm38)	S472P	probably benign	Het
Med27	T	A	2: 29,377,938 (GRCm38)	V33D		Het
Mup15	C	T	4: 61,438,289 (GRCm38)	E80K	probably benign	Het
Myo18a	G	A	11: 77,859,420 (GRCm38)	R199H		Het
Nebl	T	A	2: 17,390,916 (GRCm38)	R558*	probably null	Het
Olfr1121	A	G	2: 87,372,269 (GRCm38)	T246A	probably damaging	Het
Olfr1252	A	T	2: 89,721,259 (GRCm38)	I284K	probably damaging	Het
Olfr1329	A	T	4: 118,916,986 (GRCm38)	H160Q	probably benign	Het
Olfr506	T	C	7: 108,612,991 (GRCm38)	I228T	probably damaging	Het
Olfr740	G	T	14: 50,453,885 (GRCm38)	V278L	probably benign	Het
Olfr815	T	C	10: 129,902,353 (GRCm38)	D119G	probably damaging	Het
Olfr890	A	T	9: 38,143,440 (GRCm38)	M97L	probably benign	Het
Pde11a	A	T	2: 76,215,353 (GRCm38)	F376I	possibly damaging	Het
Prima1	A	T	12: 103,235,661 (GRCm38)	C52S	probably damaging	Het
Pxn	G	A	5: 115,548,547 (GRCm38)	R366H	not run	Het
Sgce	T	C	6: 4,691,564 (GRCm38)	Y337C	probably damaging	Het
Slc25a10	T	A	11: 120,495,460 (GRCm38)	M130K	probably benign	Het
Slc29a2	A	T	19: 5,024,262 (GRCm38)	N5I	probably benign	Het
Slc35a1	A	T	4: 34,673,875 (GRCm38)	H150Q		Het
Slc5a4a	T	A	10: 76,147,550 (GRCm38)	V7D	unknown	Het
Stk17b	T	A	1: 53,766,000 (GRCm38)	D134V	probably damaging	Het
Thbs3	T	A	3: 89,216,707 (GRCm38)	S36T	probably benign	Het
Thsd4	A	G	9: 60,428,174 (GRCm38)	S152P	probably benign	Het
Tmem67	G	T	4: 12,063,698 (GRCm38)	H422N	probably benign	Het
Tram1	C	A	1: 13,589,644 (GRCm38)	V27F	probably damaging	Het
Trim14	A	G	4: 46,507,238 (GRCm38)	V326A	possibly damaging	Het

Other mutations in Leo1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00433:Leo1	APN	9	75,450,480 (GRCm38)	splice site	probably benign
IGL01412:Leo1	APN	9	75,466,242 (GRCm38)	missense	probably benign	0.08
IGL01789:Leo1	APN	9	75,454,614 (GRCm38)	splice site	probably benign
IGL02116:Leo1	APN	9	75,449,415 (GRCm38)	missense	probably damaging	1.00
IGL02303:Leo1	APN	9	75,445,999 (GRCm38)	splice site	probably benign
FR4449:Leo1	UTSW	9	75,450,573 (GRCm38)	critical splice donor site	probably benign
FR4976:Leo1	UTSW	9	75,450,572 (GRCm38)	critical splice donor site	probably benign
R0729:Leo1	UTSW	9	75,457,138 (GRCm38)	missense	possibly damaging	0.78
R0811:Leo1	UTSW	9	75,445,549 (GRCm38)	missense	probably benign	0.02
R0812:Leo1	UTSW	9	75,445,549 (GRCm38)	missense	probably benign	0.02
R0960:Leo1	UTSW	9	75,445,240 (GRCm38)	missense	probably benign	0.01
R1272:Leo1	UTSW	9	75,450,513 (GRCm38)	missense	possibly damaging	0.95
R1349:Leo1	UTSW	9	75,449,469 (GRCm38)	missense	possibly damaging	0.80
R1372:Leo1	UTSW	9	75,449,469 (GRCm38)	missense	possibly damaging	0.80
R1634:Leo1	UTSW	9	75,466,260 (GRCm38)	missense	possibly damaging	0.88
R2118:Leo1	UTSW	9	75,445,812 (GRCm38)	missense	probably damaging	0.99
R2167:Leo1	UTSW	9	75,445,709 (GRCm38)	missense	probably benign	0.01
R2484:Leo1	UTSW	9	75,445,473 (GRCm38)	missense	possibly damaging	0.66
R3963:Leo1	UTSW	9	75,450,480 (GRCm38)	splice site	probably benign
R4628:Leo1	UTSW	9	75,445,697 (GRCm38)	missense	probably damaging	1.00
R4935:Leo1	UTSW	9	75,445,877 (GRCm38)	missense	probably benign	0.13
R5590:Leo1	UTSW	9	75,457,141 (GRCm38)	missense	possibly damaging	0.90
R5875:Leo1	UTSW	9	75,450,560 (GRCm38)	missense	probably damaging	0.98
R6394:Leo1	UTSW	9	75,445,470 (GRCm38)	missense	probably benign	0.00
R7203:Leo1	UTSW	9	75,445,996 (GRCm38)	splice site	probably null
R7472:Leo1	UTSW	9	75,448,341 (GRCm38)	missense	probably damaging	1.00
R7654:Leo1	UTSW	9	75,455,679 (GRCm38)	missense	possibly damaging	0.66
R7998:Leo1	UTSW	9	75,445,276 (GRCm38)	missense	probably benign	0.04
R8679:Leo1	UTSW	9	75,466,262 (GRCm38)	nonsense	probably null
R8680:Leo1	UTSW	9	75,445,995 (GRCm38)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CTCTCATCACAGTGGCAGTG -3'
(R):5'- AGCTGCTGTCTGTCATCATC -3'

Sequencing Primer
(F):5'- GTGACAATCACTCTGAACGGTCAG -3'
(R):5'- GTCTGTCATCATCAGAAATCTGGGC -3'

Posted On

2019-11-12