Mutagenetix > Incidental Mutation

Incidental Mutation 'R7671:Slc5a4a'

592168

Institutional Source

Beutler Lab

Gene Symbol

Slc5a4a

Ensembl Gene

ENSMUSG00000020229

Gene Name

solute carrier family 5, member 4a

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.092) question?

Stock #

R7671 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

76147451-76189265 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 76147550 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 7 (V7D)

Ref Sequence

ENSEMBL: ENSMUSP00000020450 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020450]

AlphaFold

no structure available at present

Predicted Effect

unknown
Transcript: ENSMUST00000020450
AA Change: V7D

SMART Domains

Protein: ENSMUSP00000020450
Gene: ENSMUSG00000020229
AA Change: V7D

Domain	Start	End	E-Value	Type
transmembrane domain	26	48	N/A	INTRINSIC
Pfam:SSF	58	492	4e-161	PFAM
transmembrane domain	526	548	N/A	INTRINSIC
transmembrane domain	636	655	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610009O20Rik	T	A	18: 38,259,925 (GRCm38)	I394N	probably damaging	Het
4930435E12Rik	C	T	16: 38,828,091 (GRCm38)	D219N	possibly damaging	Het
4932438A13Rik	T	C	3: 36,943,231 (GRCm38)	F1146L	probably damaging	Het
4933406M09Rik	T	C	1: 134,390,062 (GRCm38)	C191R	probably benign	Het
Akap13	C	A	7: 75,569,900 (GRCm38)	T17K	probably damaging	Het
Ankrd29	T	A	18: 12,260,986 (GRCm38)	K257I	probably damaging	Het
Bicc1	A	G	10: 70,957,167 (GRCm38)	L219P	probably benign	Het
Boc	C	T	16: 44,491,849 (GRCm38)	V617M		Het
Ccl8	A	G	11: 82,115,207 (GRCm38)		probably benign	Het
Col18a1	A	G	10: 77,085,383 (GRCm38)	L261P	unknown	Het
Col5a3	T	A	9: 20,775,086 (GRCm38)		probably null	Het
Cryba4	A	C	5: 112,248,173 (GRCm38)		probably null	Het
Csf2rb	A	G	15: 78,338,930 (GRCm38)	Y114C	probably damaging	Het
Ctif	T	C	18: 75,472,016 (GRCm38)	D484G	probably damaging	Het
Ctnnal1	A	G	4: 56,837,848 (GRCm38)	F261L	probably damaging	Het
Defb22	A	T	2: 152,486,030 (GRCm38)	N78K	unknown	Het
Efr3a	G	A	15: 65,837,434 (GRCm38)		probably null	Het
Elp4	G	T	2: 105,904,481 (GRCm38)	A3E	probably damaging	Het
Emilin2	A	G	17: 71,273,910 (GRCm38)	V607A	probably benign	Het
Epsti1	A	G	14: 77,904,490 (GRCm38)	Y2C	probably damaging	Het
Fam81b	G	T	13: 76,271,294 (GRCm38)	L46I	possibly damaging	Het
Fam81b	A	C	13: 76,271,293 (GRCm38)	L46R	probably damaging	Het
Fbxo15	T	A	18: 84,964,153 (GRCm38)	H288Q	probably damaging	Het
Gabrg1	T	A	5: 70,815,980 (GRCm38)	N77I	probably damaging	Het
Ganab	A	G	19: 8,912,852 (GRCm38)	Y715C	possibly damaging	Het
Hist3h2ba	T	C	11: 58,949,276 (GRCm38)	S113P	possibly damaging	Het
Iqgap2	T	C	13: 95,628,119 (GRCm38)	D1539G	probably damaging	Het
Kcp	T	C	6: 29,496,517 (GRCm38)	N633S	probably benign	Het
Krt6a	C	A	15: 101,690,543 (GRCm38)	S529I	unknown	Het
Leo1	A	G	9: 75,445,562 (GRCm38)	H129R	probably benign	Het
Lmf1	G	A	17: 25,579,349 (GRCm38)	V55M	possibly damaging	Het
Mcm9	A	G	10: 53,537,569 (GRCm38)	S472P	probably benign	Het
Med27	T	A	2: 29,377,938 (GRCm38)	V33D		Het
Mup15	C	T	4: 61,438,289 (GRCm38)	E80K	probably benign	Het
Myo18a	G	A	11: 77,859,420 (GRCm38)	R199H		Het
Nebl	T	A	2: 17,390,916 (GRCm38)	R558*	probably null	Het
Olfr1121	A	G	2: 87,372,269 (GRCm38)	T246A	probably damaging	Het
Olfr1252	A	T	2: 89,721,259 (GRCm38)	I284K	probably damaging	Het
Olfr1329	A	T	4: 118,916,986 (GRCm38)	H160Q	probably benign	Het
Olfr506	T	C	7: 108,612,991 (GRCm38)	I228T	probably damaging	Het
Olfr740	G	T	14: 50,453,885 (GRCm38)	V278L	probably benign	Het
Olfr815	T	C	10: 129,902,353 (GRCm38)	D119G	probably damaging	Het
Olfr890	A	T	9: 38,143,440 (GRCm38)	M97L	probably benign	Het
Pde11a	A	T	2: 76,215,353 (GRCm38)	F376I	possibly damaging	Het
Prima1	A	T	12: 103,235,661 (GRCm38)	C52S	probably damaging	Het
Pxn	G	A	5: 115,548,547 (GRCm38)	R366H	not run	Het
Sgce	T	C	6: 4,691,564 (GRCm38)	Y337C	probably damaging	Het
Slc25a10	T	A	11: 120,495,460 (GRCm38)	M130K	probably benign	Het
Slc29a2	A	T	19: 5,024,262 (GRCm38)	N5I	probably benign	Het
Slc35a1	A	T	4: 34,673,875 (GRCm38)	H150Q		Het
Stk17b	T	A	1: 53,766,000 (GRCm38)	D134V	probably damaging	Het
Thbs3	T	A	3: 89,216,707 (GRCm38)	S36T	probably benign	Het
Thsd4	A	G	9: 60,428,174 (GRCm38)	S152P	probably benign	Het
Tmem67	G	T	4: 12,063,698 (GRCm38)	H422N	probably benign	Het
Tram1	C	A	1: 13,589,644 (GRCm38)	V27F	probably damaging	Het
Trim14	A	G	4: 46,507,238 (GRCm38)	V326A	possibly damaging	Het

Other mutations in Slc5a4a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00670:Slc5a4a	APN	10	76,163,733 (GRCm38)	missense	probably damaging	1.00
IGL01725:Slc5a4a	APN	10	76,181,674 (GRCm38)	missense	probably benign	0.00
IGL02629:Slc5a4a	APN	10	76,147,579 (GRCm38)	missense	unknown
IGL02976:Slc5a4a	APN	10	76,170,693 (GRCm38)	missense	possibly damaging	0.67
IGL03255:Slc5a4a	APN	10	76,150,512 (GRCm38)	missense	probably damaging	1.00
IGL03258:Slc5a4a	APN	10	76,150,552 (GRCm38)	missense	possibly damaging	0.81
R0054:Slc5a4a	UTSW	10	76,178,197 (GRCm38)	missense	probably null	0.00
R0244:Slc5a4a	UTSW	10	76,189,152 (GRCm38)	missense	possibly damaging	0.46
R0398:Slc5a4a	UTSW	10	76,182,722 (GRCm38)	missense	possibly damaging	0.46
R0799:Slc5a4a	UTSW	10	76,176,534 (GRCm38)	missense	probably benign	0.00
R1160:Slc5a4a	UTSW	10	76,178,161 (GRCm38)	missense	possibly damaging	0.52
R1471:Slc5a4a	UTSW	10	76,186,528 (GRCm38)	missense	probably damaging	0.99
R1720:Slc5a4a	UTSW	10	76,189,269 (GRCm38)	splice site	probably null
R1857:Slc5a4a	UTSW	10	76,166,735 (GRCm38)	missense	probably benign	0.27
R1858:Slc5a4a	UTSW	10	76,166,735 (GRCm38)	missense	probably benign	0.27
R1859:Slc5a4a	UTSW	10	76,166,735 (GRCm38)	missense	probably benign	0.27
R1942:Slc5a4a	UTSW	10	76,147,588 (GRCm38)	missense	unknown
R2016:Slc5a4a	UTSW	10	76,153,580 (GRCm38)	missense	probably benign	0.00
R2316:Slc5a4a	UTSW	10	76,178,081 (GRCm38)	splice site	probably null
R3420:Slc5a4a	UTSW	10	76,176,573 (GRCm38)	missense	probably benign	0.00
R3421:Slc5a4a	UTSW	10	76,176,573 (GRCm38)	missense	probably benign	0.00
R3422:Slc5a4a	UTSW	10	76,176,573 (GRCm38)	missense	probably benign	0.00
R3845:Slc5a4a	UTSW	10	76,189,149 (GRCm38)	missense	probably damaging	0.99
R3874:Slc5a4a	UTSW	10	76,181,655 (GRCm38)	missense	probably benign	0.42
R4523:Slc5a4a	UTSW	10	76,148,362 (GRCm38)	missense	probably damaging	0.99
R4537:Slc5a4a	UTSW	10	76,178,095 (GRCm38)	nonsense	probably null
R4538:Slc5a4a	UTSW	10	76,178,095 (GRCm38)	nonsense	probably null
R4755:Slc5a4a	UTSW	10	76,186,564 (GRCm38)	missense	probably benign	0.00
R4868:Slc5a4a	UTSW	10	76,178,231 (GRCm38)	missense	probably damaging	0.98
R5135:Slc5a4a	UTSW	10	76,147,594 (GRCm38)	missense	unknown
R5254:Slc5a4a	UTSW	10	76,182,738 (GRCm38)	nonsense	probably null
R6083:Slc5a4a	UTSW	10	76,147,597 (GRCm38)	missense	unknown
R6331:Slc5a4a	UTSW	10	76,178,200 (GRCm38)	missense	probably damaging	0.98
R7591:Slc5a4a	UTSW	10	76,147,667 (GRCm38)	critical splice donor site	probably benign
R8785:Slc5a4a	UTSW	10	76,150,404 (GRCm38)	critical splice acceptor site	probably benign
R8929:Slc5a4a	UTSW	10	76,170,783 (GRCm38)	missense	probably benign	0.27
R8993:Slc5a4a	UTSW	10	76,186,535 (GRCm38)	missense	probably benign	0.15
R9018:Slc5a4a	UTSW	10	76,166,712 (GRCm38)	missense	possibly damaging	0.67
R9474:Slc5a4a	UTSW	10	76,150,404 (GRCm38)	critical splice acceptor site	probably benign
R9567:Slc5a4a	UTSW	10	76,186,562 (GRCm38)	missense	probably benign	0.08
R9648:Slc5a4a	UTSW	10	76,166,774 (GRCm38)	missense	probably damaging	1.00
Z1177:Slc5a4a	UTSW	10	76,182,847 (GRCm38)	nonsense	probably null
Z1177:Slc5a4a	UTSW	10	76,166,744 (GRCm38)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TCCAATTCCACTCAGGCTGG -3'
(R):5'- ACTGTGACATGTTTTCCCTGG -3'

Sequencing Primer
(F):5'- TGGCACTAGTCACCTTGAAG -3'
(R):5'- GGTAATCTTAGTGCCCACCCAG -3'

Posted On

2019-11-12