Mutagenetix > Incidental Mutations

Incidental Mutation 'R0239:Tsnaxip1'

59232

Institutional Source

Beutler Lab

Gene Symbol

Tsnaxip1

Ensembl Gene

ENSMUSG00000031893

Gene Name

translin-associated factor X (Tsnax) interacting protein 1

Synonyms

1700016K08Rik, TXI1

MMRRC Submission

038477-MU

Accession Numbers

Is this an essential gene?

Possibly essential (E-score: 0.536) question?

Stock #

R0239 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

105827731-105844680 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 105844488 bp

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 660 (I660N)

Ref Sequence

ENSEMBL: ENSMUSP00000034365 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034365] [ENSMUST00000040776] [ENSMUST00000212431] [ENSMUST00000212566] [ENSMUST00000212839]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000034365
AA Change: I660N

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000034365
Gene: ENSMUSG00000031893
AA Change: I660N

Domain	Start	End	E-Value	Type
Pfam:TSNAXIP1_N	98	209	3.5e-33	PFAM
coiled coil region	304	342	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000040776

SMART Domains

Protein: ENSMUSP00000038188
Gene: ENSMUSG00000036672

Domain	Start	End	E-Value	Type
Pfam:CENP-T_N	1	374	4.2e-174	PFAM
Pfam:CENP-T_C	404	507	5.4e-36	PFAM
Pfam:CENP-S	424	479	3e-12	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211949

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000212204

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000212357

Predicted Effect

probably benign
Transcript: ENSMUST00000212431

Predicted Effect

unknown
Transcript: ENSMUST00000212566
AA Change: I582N

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000212625

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000212797

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000212803

Predicted Effect

probably benign
Transcript: ENSMUST00000212839

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000212873

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.4%
3x: 99.0%
10x: 97.9%
20x: 96.2%

Validation Efficiency

98% (81/83)

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adra1d	C	A	2: 131,546,214	V474F	probably benign	Het
Alg8	A	T	7: 97,383,684		probably null	Het
Ash1l	A	G	3: 89,067,222	D2618G	possibly damaging	Het
Atp6v1c2	C	A	12: 17,294,675		probably null	Het
Cacna1d	A	G	14: 30,123,496	V572A	probably benign	Het
Camta1	A	G	4: 151,143,730	W882R	probably damaging	Het
Cd72	A	G	4: 43,453,163	V91A	probably benign	Het
Cdh12	T	C	15: 21,586,407	W771R	probably damaging	Het
Cdx2	G	T	5: 147,303,287	T193K	probably damaging	Het
Cfap70	A	C	14: 20,448,605	S5A	probably benign	Het
Chmp7	A	G	14: 69,720,997	V241A	probably damaging	Het
Col4a1	C	T	8: 11,218,780		probably benign	Het
D3Ertd751e	A	G	3: 41,753,878	Y150C	probably damaging	Het
Depdc5	T	C	5: 32,943,240	S832P	probably damaging	Het
Dnhd1	A	G	7: 105,721,531	S4673G	probably benign	Het
Dock4	G	T	12: 40,737,540	S818I	probably damaging	Het
Dysf	C	T	6: 84,064,479	Q156*	probably null	Het
Espnl	T	C	1: 91,322,287	V52A	probably damaging	Het
Flcn	T	C	11: 59,801,076	N249S	probably benign	Het
Gemin6	C	A	17: 80,225,710	A24D	probably damaging	Het
Gm5773	A	G	3: 93,774,032	H337R	probably benign	Het
Gm9733	A	G	3: 15,296,601	L163P	probably damaging	Het
Greb1l	C	T	18: 10,458,567		probably benign	Het
Hal	T	C	10: 93,503,482	S478P	possibly damaging	Het
Hectd1	T	A	12: 51,769,318	M1324L	possibly damaging	Het
Hyal5	T	A	6: 24,876,344	L72Q	probably damaging	Het
Ift140	C	A	17: 25,045,523	C557*	probably null	Het
Ikbkap	C	A	4: 56,784,596	V466L	probably benign	Het
Il4ra	T	C	7: 125,575,199		probably benign	Het
Ipo9	A	G	1: 135,404,336		probably benign	Het
Kbtbd3	G	T	9: 4,330,144	V173L	possibly damaging	Het
Kif14	A	G	1: 136,527,393	E1551G	probably damaging	Het
Klc1	A	G	12: 111,785,324		probably benign	Het
Krt17	G	A	11: 100,260,878	R30*	probably null	Het
Lamb3	A	T	1: 193,321,053	D100V	probably damaging	Het
Lrmp	G	A	6: 145,171,978		probably benign	Het
Map2	A	G	1: 66,416,106	D1385G	probably damaging	Het
Mettl25	C	T	10: 105,826,525	V195I	probably damaging	Het
Mfsd7a	G	T	5: 108,444,016		probably benign	Het
Micu2	G	A	14: 57,917,378		probably benign	Het
Mrrf	T	C	2: 36,177,281		probably benign	Het
Myh8	A	G	11: 67,301,692	T1466A	probably benign	Het
Myo3b	T	A	2: 70,105,425	C61S	probably benign	Het
Nacc2	T	G	2: 26,062,261	N361T	probably damaging	Het
Nf1	A	T	11: 79,418,574	K438M	possibly damaging	Het
Nipal4	A	G	11: 46,150,441	V309A	possibly damaging	Het
Nomo1	T	C	7: 46,079,594		probably null	Het
Nubp2	T	C	17: 24,884,471	E144G	probably damaging	Het
Nwd2	A	T	5: 63,800,124	I266F	probably benign	Het
Olfr1126	T	C	2: 87,458,037	F291L	probably benign	Het
Olfr593	G	A	7: 103,212,726	V289M	possibly damaging	Het
Olfr694	A	G	7: 106,689,255	Y159H	probably benign	Het
Orc1	T	C	4: 108,595,646		probably null	Het
Otogl	T	A	10: 107,806,696	N1291I	probably damaging	Het
Pah	C	T	10: 87,567,281	P173S	possibly damaging	Het
Pga5	A	G	19: 10,669,453	Y305H	probably damaging	Het
Plekha4	A	G	7: 45,532,358	H62R	probably damaging	Het
Plxnd1	G	T	6: 115,968,793	D906E	probably benign	Het
Ppfia4	T	C	1: 134,329,189	E98G	possibly damaging	Het
Ptk2	A	T	15: 73,343,283		probably null	Het
Pzp	C	T	6: 128,489,156		probably benign	Het
Raet1c	C	A	10: 22,180,862	H112Q	possibly damaging	Het
Scai	T	A	2: 39,075,042	I597F	probably benign	Het
Scgb1b2	T	A	7: 31,291,730		probably benign	Het
Sec31b	G	A	19: 44,525,469		probably benign	Het
Slc35c2	C	T	2: 165,280,837	G176S	probably damaging	Het
Slc35f4	A	T	14: 49,304,256	I347N	possibly damaging	Het
Slc52a3	T	C	2: 152,008,156	*461Q	probably null	Het
Slc6a1	G	A	6: 114,302,800	V142I	probably benign	Het
Tbc1d31	C	A	15: 57,940,753	T388N	probably benign	Het
Tmem131	T	C	1: 36,828,050		probably benign	Het
Tmem63c	T	C	12: 87,075,639	W404R	probably damaging	Het
Tmem79	A	G	3: 88,333,321	S107P	probably benign	Het
Trip11	C	T	12: 101,884,728	E741K	probably damaging	Het
Trpm5	G	T	7: 143,082,958	T414N	probably damaging	Het
Ube2q2	T	C	9: 55,163,007	S78P	probably damaging	Het
Vac14	A	T	8: 110,635,375		probably null	Het
Vps51	G	T	19: 6,071,437	S185*	probably null	Het
Zfp11	C	T	5: 129,658,238	G53E	possibly damaging	Het
Zfp532	A	T	18: 65,682,985	I810F	possibly damaging	Het
Zfp599	C	T	9: 22,249,759	C370Y	probably damaging	Het

Other mutations in Tsnaxip1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00479:Tsnaxip1	APN	8	105841423	missense	probably benign	0.04
IGL00490:Tsnaxip1	APN	8	105842184	missense	probably damaging	1.00
IGL00849:Tsnaxip1	APN	8	105842168	missense	probably damaging	0.99
IGL01756:Tsnaxip1	APN	8	105842788	splice site	probably benign
IGL01821:Tsnaxip1	APN	8	105837516	missense	probably damaging	0.96
IGL02278:Tsnaxip1	APN	8	105827781	utr 5 prime	probably benign
IGL02290:Tsnaxip1	APN	8	105833487	missense	probably benign	0.00
IGL02980:Tsnaxip1	UTSW	8	105842210	missense	probably damaging	0.96
R0239:Tsnaxip1	UTSW	8	105844488	missense	possibly damaging	0.96
R1544:Tsnaxip1	UTSW	8	105827751	start gained	probably benign
R1939:Tsnaxip1	UTSW	8	105840038	missense	probably benign	0.04
R3024:Tsnaxip1	UTSW	8	105841743	missense	probably damaging	1.00
R3695:Tsnaxip1	UTSW	8	105833535	missense	possibly damaging	0.61
R3853:Tsnaxip1	UTSW	8	105840701	splice site	probably benign
R4044:Tsnaxip1	UTSW	8	105833545	splice site	probably null
R4376:Tsnaxip1	UTSW	8	105841801	nonsense	probably null
R4627:Tsnaxip1	UTSW	8	105841407	missense	probably damaging	1.00
R4790:Tsnaxip1	UTSW	8	105833523	missense	probably benign	0.12
R5806:Tsnaxip1	UTSW	8	105837496	missense	possibly damaging	0.83
R5814:Tsnaxip1	UTSW	8	105843971	missense	probably benign	0.00
R6045:Tsnaxip1	UTSW	8	105844187	missense	probably benign	0.24
R6374:Tsnaxip1	UTSW	8	105841540	missense	possibly damaging	0.55
R6406:Tsnaxip1	UTSW	8	105843983	missense	probably benign	0.14
R7915:Tsnaxip1	UTSW	8	105842781	missense	possibly damaging	0.88
R7918:Tsnaxip1	UTSW	8	105844535	missense	probably benign	0.00
R8317:Tsnaxip1	UTSW	8	105827806	missense	probably benign	0.07
R8377:Tsnaxip1	UTSW	8	105842547	missense	probably damaging	1.00
R8534:Tsnaxip1	UTSW	8	105838738	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTCTCCCCAGAAACAGGTAACATGC -3'
(R):5'- CATCTCCTGGCACCAAGAAAGTCTC -3'

Sequencing Primer
(F):5'- ACAGGTAACATGCTGGGC -3'
(R):5'- AGTCTCACAAATGGGTTCTTCTG -3'

Posted On

2013-07-11