Incidental Mutation 'R7676:Vmn1r51'
ID 592450
Institutional Source Beutler Lab
Gene Symbol Vmn1r51
Ensembl Gene ENSMUSG00000062818
Gene Name vomeronasal 1 receptor 51
Synonyms VN12, V1ra1, V1r1
MMRRC Submission 045647-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7676 (G1)
Quality Score 225.009
Status Not validated
Chromosome 6
Chromosomal Location 90099625-90107627 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 90106437 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Histidine at position 118 (Y118H)
Ref Sequence ENSEMBL: ENSMUSP00000133870 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072859] [ENSMUST00000174204] [ENSMUST00000226542] [ENSMUST00000226977] [ENSMUST00000227109] [ENSMUST00000227766] [ENSMUST00000227876] [ENSMUST00000227911] [ENSMUST00000228880]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000072859
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000072637
Gene: ENSMUSG00000062818
AA Change: Y118H

DomainStartEndE-ValueType
transmembrane domain 41 63 N/A INTRINSIC
Pfam:V1R 64 328 1.5e-138 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000174204
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000133870
Gene: ENSMUSG00000062818
AA Change: Y118H

DomainStartEndE-ValueType
transmembrane domain 41 63 N/A INTRINSIC
Pfam:V1R 64 328 1.5e-138 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226542
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000226977
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000227109
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000227766
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000227876
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000227911
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000228880
AA Change: Y118H

PolyPhen 2 Score 0.372 (Sensitivity: 0.90; Specificity: 0.89)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygotes and heterozygotes for a null mutation exhibit axons that fail to converge on multiple discrete glomeruli, but rather, appear widely distributed throughout the glomerular layer of the accessory olfactory bulb. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 39 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acaca A G 11: 84,185,813 (GRCm39) D116G possibly damaging Het
Adam6a G A 12: 113,508,196 (GRCm39) G190S probably benign Het
Adnp G A 2: 168,025,367 (GRCm39) R643* probably null Het
Akap6 A G 12: 52,933,633 (GRCm39) D375G possibly damaging Het
Aldh1l2 G T 10: 83,343,975 (GRCm39) A480E probably benign Het
Ccdc175 T A 12: 72,148,821 (GRCm39) Q779L possibly damaging Het
Dnah7b T G 1: 46,273,324 (GRCm39) L2484* probably null Het
Dnajc21 T C 15: 10,462,430 (GRCm39) Y65C possibly damaging Het
Dnhd1 C A 7: 105,333,294 (GRCm39) N255K probably benign Het
Efhc1 G T 1: 21,037,593 (GRCm39) G257W probably damaging Het
Fars2 C A 13: 36,389,026 (GRCm39) L172I probably benign Het
Fat4 T C 3: 38,945,846 (GRCm39) Y1580H probably damaging Het
Fli1 T A 9: 32,339,326 (GRCm39) N253Y probably benign Het
Foxd3 G T 4: 99,545,151 (GRCm39) C97F probably damaging Het
Gem C A 4: 11,711,170 (GRCm39) D120E possibly damaging Het
Ighv10-3 A G 12: 114,487,299 (GRCm39) C41R probably damaging Het
Katnip A G 7: 125,449,549 (GRCm39) D897G probably benign Het
Kcnab3 A G 11: 69,217,553 (GRCm39) S16G probably benign Het
Keg1 T G 19: 12,693,409 (GRCm39) V154G probably benign Het
Lrrc45 G A 11: 120,611,148 (GRCm39) R602H probably damaging Het
Ltbp1 A G 17: 75,598,292 (GRCm39) D591G possibly damaging Het
Mmp10 T A 9: 7,503,550 (GRCm39) V140D probably damaging Het
Nat8f2 A T 6: 85,845,194 (GRCm39) M56K probably benign Het
Nckipsd T C 9: 108,692,153 (GRCm39) F525L probably damaging Het
Or10ak7 A G 4: 118,791,347 (GRCm39) S233P probably damaging Het
Or10j7 T A 1: 173,011,120 (GRCm39) K294* probably null Het
Or6c6c G T 10: 129,541,155 (GRCm39) S136I possibly damaging Het
P2ry12 T A 3: 59,125,178 (GRCm39) M166L possibly damaging Het
Palm3 T C 8: 84,756,074 (GRCm39) S529P possibly damaging Het
Pdilt A T 7: 119,094,220 (GRCm39) Y344N probably damaging Het
Pip4k2b A T 11: 97,611,188 (GRCm39) N309K probably benign Het
Pkd1l1 C T 11: 8,912,708 (GRCm39) V166I Het
Plxdc2 C T 2: 16,716,894 (GRCm39) S377L probably benign Het
Rc3h2 A T 2: 37,295,344 (GRCm39) V224E possibly damaging Het
Stk32c T A 7: 138,685,220 (GRCm39) D428V possibly damaging Het
Ttn T C 2: 76,644,951 (GRCm39) D12968G probably damaging Het
Tulp2 G T 7: 45,170,451 (GRCm39) V457F possibly damaging Het
Vcan A T 13: 89,839,908 (GRCm39) S1879T probably damaging Het
Zfat A C 15: 68,096,693 (GRCm39) V40G possibly damaging Het
Other mutations in Vmn1r51
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01411:Vmn1r51 APN 6 90,106,386 (GRCm39) missense probably benign 0.07
R3196:Vmn1r51 UTSW 6 90,106,498 (GRCm39) missense probably damaging 1.00
R5611:Vmn1r51 UTSW 6 90,106,692 (GRCm39) missense probably benign 0.04
R6402:Vmn1r51 UTSW 6 90,106,444 (GRCm39) missense probably benign 0.25
R6979:Vmn1r51 UTSW 6 90,106,186 (GRCm39) missense possibly damaging 0.61
R7035:Vmn1r51 UTSW 6 90,106,207 (GRCm39) missense probably benign 0.00
R7074:Vmn1r51 UTSW 6 90,106,654 (GRCm39) missense probably benign 0.01
R8900:Vmn1r51 UTSW 6 90,106,842 (GRCm39) missense probably damaging 1.00
R9468:Vmn1r51 UTSW 6 90,106,930 (GRCm39) missense probably damaging 1.00
R9672:Vmn1r51 UTSW 6 90,106,549 (GRCm39) missense probably damaging 0.98
Predicted Primers PCR Primer
(F):5'- ATTGGCATTGGGATCTCAGGC -3'
(R):5'- TGGATACCAAGAGTTGACTGC -3'

Sequencing Primer
(F):5'- CATTGGGATCTCAGGCAATAGCTTC -3'
(R):5'- TACCAAGAGTTGACTGCCAATTAAC -3'
Posted On 2019-11-12