Mutagenetix > Incidental Mutation

Incidental Mutation 'R7689:Larp4b'

593289

Institutional Source

Beutler Lab

Gene Symbol

Larp4b

Ensembl Gene

ENSMUSG00000033499

Gene Name

La ribonucleoprotein 4B

Synonyms

Larp5, D13Wsu64e

MMRRC Submission

045753-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.762) question?

Stock #

R7689 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

9143917-9224487 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 9186834 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Leucine at position 54 (S54L)

Ref Sequence

ENSEMBL: ENSMUSP00000140993 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000091829] [ENSMUST00000188211] [ENSMUST00000188939]

AlphaFold

Q6A0A2

Predicted Effect

probably damaging
Transcript: ENSMUST00000091829
AA Change: S54L

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000089437
Gene: ENSMUSG00000033499
AA Change: S54L

Domain	Start	End	E-Value	Type
LA	156	234	3.25e-36	SMART
RRM	239	309	6.25e-2	SMART
low complexity region	510	529	N/A	INTRINSIC
low complexity region	586	597	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000188211
AA Change: S54L

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000140993
Gene: ENSMUSG00000033499
AA Change: S54L

Domain	Start	End	E-Value	Type
LA	156	234	3.25e-36	SMART
RRM	239	309	6.25e-2	SMART
low complexity region	510	529	N/A	INTRINSIC
low complexity region	586	597	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000188939
AA Change: S54L

PolyPhen 2 Score 0.223 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000139578
Gene: ENSMUSG00000033499
AA Change: S54L

Domain	Start	End	E-Value	Type
LA	156	234	3.25e-36	SMART
RRM	239	309	6.25e-2	SMART
low complexity region	510	529	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of an evolutionarily conserved protein family implicated in RNA metabolism and translation. Members of this family are characterized by the presence of an La motif, which is often located adjacent to one or more RNA recognition motifs (RRM). Together, the two motifs constitute the functional region of the protein and enable its interaction with the RNA substrate. This protein family is divided into five sub-families: the genuine La proteins and four La-related protein (LARP) sub-families. The protein encoded by this gene belongs to LARP sub-family 4. It is a cytoplasmic protein that may play a stimulatory role in translation. [provided by RefSeq, Oct 2012]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2510039O18Rik	T	A	4: 148,029,440 (GRCm39)	F470Y	probably damaging	Het
Adra1a	T	C	14: 66,875,250 (GRCm39)	L75P	probably damaging	Het
Agap1	T	C	1: 89,762,188 (GRCm39)	S560P	probably damaging	Het
Ahcyl	T	C	16: 45,974,970 (GRCm39)	T136A	probably benign	Het
Arrdc4	T	A	7: 68,391,623 (GRCm39)	I215L	probably damaging	Het
Atad3a	C	T	4: 155,840,610 (GRCm39)	A97T	probably damaging	Het
Bcas3	A	T	11: 85,386,713 (GRCm39)	T383S	probably benign	Het
C2cd5	G	A	6: 142,995,951 (GRCm39)	R379*	probably null	Het
Cacna1e	G	T	1: 154,274,549 (GRCm39)	H2138N	probably benign	Het
Card14	A	T	11: 119,216,328 (GRCm39)	D303V	possibly damaging	Het
Ccdc202	T	C	14: 96,119,252 (GRCm39)	V3A	probably benign	Het
Cfhr1	T	C	1: 139,475,478 (GRCm39)	Y331C	unknown	Het
Chp1	G	A	2: 119,415,146 (GRCm39)	D183N	probably benign	Het
Cntn2	T	C	1: 132,443,882 (GRCm39)	T966A	probably benign	Het
Cpne9	T	G	6: 113,266,965 (GRCm39)	C133G	probably damaging	Het
Cspg4b	A	G	13: 113,515,948 (GRCm39)	T121A		Het
Cul7	C	T	17: 46,963,747 (GRCm39)	Q275*	probably null	Het
Cyp11b1	T	C	15: 74,710,897 (GRCm39)	D221G	probably benign	Het
Dmxl1	T	A	18: 49,979,685 (GRCm39)	F107I	probably benign	Het
Dnhd1	A	G	7: 105,363,170 (GRCm39)	I3911V	probably benign	Het
Eif1ad16	A	G	12: 87,985,259 (GRCm39)	Y95H	probably damaging	Het
Eloa	T	C	4: 135,736,595 (GRCm39)	H551R	probably benign	Het
Fam171b	T	A	2: 83,709,732 (GRCm39)	V468D	probably benign	Het
Fat2	A	G	11: 55,200,666 (GRCm39)	W803R	probably damaging	Het
Fbxo43	T	C	15: 36,163,201 (GRCm39)	D2G	probably benign	Het
Fbxo8	A	G	8: 57,041,120 (GRCm39)	T179A	probably benign	Het
Gdap1	A	G	1: 17,231,623 (GRCm39)	T323A	probably damaging	Het
Gm136	T	C	4: 34,743,875 (GRCm39)	N323S	probably null	Het
Gm6899	A	T	11: 26,543,819 (GRCm39)	T129S	unknown	Het
Gnb3	A	T	6: 124,814,183 (GRCm39)	C166S	possibly damaging	Het
Gpr61	A	G	3: 108,057,966 (GRCm39)	F232L	probably damaging	Het
Gpx8	T	C	13: 113,179,711 (GRCm39)	M197V	probably benign	Het
Gse1	G	T	8: 121,295,217 (GRCm39)	R446L	unknown	Het
Itch	A	T	2: 155,054,987 (GRCm39)	T764S	probably benign	Het
Itch	A	G	2: 155,051,922 (GRCm39)	K614E	probably damaging	Het
Itpkb	T	G	1: 180,241,544 (GRCm39)	M738R	probably damaging	Het
Jph1	T	A	1: 17,074,192 (GRCm39)	K609*	probably null	Het
Kcns1	G	A	2: 164,010,241 (GRCm39)	R173C	probably damaging	Het
Lonrf1	G	T	8: 36,715,918 (GRCm39)	S239*	probably null	Het
Lyst	T	G	13: 13,857,808 (GRCm39)		probably null	Het
Mccc1	T	A	3: 36,015,132 (GRCm39)	R663*	probably null	Het
Mcm3	A	G	1: 20,876,997 (GRCm39)	V646A	probably benign	Het
Mdn1	T	C	4: 32,739,912 (GRCm39)	L3722P	probably damaging	Het
Mmp27	T	G	9: 7,579,002 (GRCm39)	D392E	probably damaging	Het
Ms4a14	A	G	19: 11,279,906 (GRCm39)	I884T	probably benign	Het
Muc4	C	T	16: 32,574,439 (GRCm39)	T963I	probably benign	Het
Muc6	G	C	7: 141,217,659 (GRCm39)	P2338R	probably damaging	Het
Mucl3	C	A	17: 35,948,969 (GRCm39)	S210I	possibly damaging	Het
Nbeal1	G	C	1: 60,276,310 (GRCm39)	V684L	probably benign	Het
Ndrg2	C	T	14: 52,147,812 (GRCm39)	A102T	possibly damaging	Het
Nhsl3	T	C	4: 129,117,566 (GRCm39)	N411S	probably benign	Het
Nos1	A	G	5: 118,035,792 (GRCm39)	D431G	probably damaging	Het
Oog4	CAA	CA	4: 143,164,022 (GRCm39)		probably null	Het
Otog	T	C	7: 45,901,480 (GRCm39)	L393P	probably damaging	Het
Plcl1	A	G	1: 55,736,627 (GRCm39)	N656S	probably damaging	Het
Pole3	C	A	4: 62,443,060 (GRCm39)	V27F	probably damaging	Het
Prrt4	T	A	6: 29,177,140 (GRCm39)	I210F	probably damaging	Het
Ptpn18	G	A	1: 34,512,445 (GRCm39)	D417N	possibly damaging	Het
Rbpms	A	T	8: 34,354,387 (GRCm39)	S53T	possibly damaging	Het
Rgs7	C	A	1: 174,949,296 (GRCm39)	V203L	probably benign	Het
Riok1	A	T	13: 38,229,263 (GRCm39)	D150V	probably damaging	Het
Rrp1b	T	C	17: 32,274,900 (GRCm39)	L335P	probably benign	Het
Rsph6a	T	G	7: 18,801,962 (GRCm39)	I592S	possibly damaging	Het
Skor1	C	T	9: 63,052,661 (GRCm39)	G436D	probably damaging	Het
Slc17a8	T	C	10: 89,433,319 (GRCm39)	T51A	possibly damaging	Het
Slc22a8	T	C	19: 8,585,248 (GRCm39)	S266P	probably damaging	Het
Socs2	A	G	10: 95,250,845 (GRCm39)		probably benign	Het
Tas2r106	A	G	6: 131,655,668 (GRCm39)	I61T	possibly damaging	Het
Tfap2a	T	C	13: 40,882,051 (GRCm39)	N77D	probably damaging	Het
Tmem236	T	A	2: 14,197,076 (GRCm39)	L88Q	probably damaging	Het
Ttc41	A	G	10: 86,595,088 (GRCm39)	E954G	probably damaging	Het
Vmn1r34	G	T	6: 66,613,994 (GRCm39)	S248*	probably null	Het
Wipf1	T	C	2: 73,262,789 (GRCm39)	R483G	probably damaging	Het
Zfhx4	A	G	3: 5,476,946 (GRCm39)	N3187S	probably benign	Het
Zfp202	C	A	9: 40,121,829 (GRCm39)	P309T	probably benign	Het
Zfp39	T	C	11: 58,781,469 (GRCm39)	H431R	probably damaging	Het
Zfp658	T	A	7: 43,224,102 (GRCm39)	H792Q	probably benign	Het

Other mutations in Larp4b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01746:Larp4b	APN	13	9,208,160 (GRCm39)	missense	probably damaging	0.99
IGL02519:Larp4b	APN	13	9,208,616 (GRCm39)	missense	probably benign	0.04
IGL02609:Larp4b	APN	13	9,220,716 (GRCm39)	missense	probably damaging	1.00
R0116:Larp4b	UTSW	13	9,220,724 (GRCm39)	missense	probably damaging	1.00
R0390:Larp4b	UTSW	13	9,208,143 (GRCm39)	splice site	probably null
R0585:Larp4b	UTSW	13	9,220,737 (GRCm39)	missense	probably benign	0.08
R0585:Larp4b	UTSW	13	9,197,529 (GRCm39)	missense	probably damaging	1.00
R0751:Larp4b	UTSW	13	9,216,345 (GRCm39)	splice site	probably benign
R1184:Larp4b	UTSW	13	9,216,345 (GRCm39)	splice site	probably benign
R1202:Larp4b	UTSW	13	9,216,362 (GRCm39)	missense	possibly damaging	0.84
R1525:Larp4b	UTSW	13	9,195,486 (GRCm39)	missense	probably damaging	1.00
R1599:Larp4b	UTSW	13	9,172,186 (GRCm39)	missense	probably damaging	1.00
R1637:Larp4b	UTSW	13	9,201,133 (GRCm39)	missense	probably benign	0.12
R1833:Larp4b	UTSW	13	9,201,235 (GRCm39)	missense	possibly damaging	0.89
R1852:Larp4b	UTSW	13	9,187,339 (GRCm39)	critical splice donor site	probably null
R1962:Larp4b	UTSW	13	9,186,878 (GRCm39)	missense	probably benign
R2359:Larp4b	UTSW	13	9,208,199 (GRCm39)	missense	probably damaging	0.97
R2973:Larp4b	UTSW	13	9,216,347 (GRCm39)	splice site	probably benign
R3803:Larp4b	UTSW	13	9,208,590 (GRCm39)	missense	probably benign	0.03
R4810:Larp4b	UTSW	13	9,208,627 (GRCm39)	missense	probably benign
R4828:Larp4b	UTSW	13	9,220,934 (GRCm39)	missense	probably damaging	1.00
R5135:Larp4b	UTSW	13	9,220,773 (GRCm39)	missense	probably damaging	1.00
R5250:Larp4b	UTSW	13	9,221,013 (GRCm39)	utr 3 prime	probably benign
R5259:Larp4b	UTSW	13	9,208,220 (GRCm39)	missense	probably damaging	0.98
R5379:Larp4b	UTSW	13	9,186,945 (GRCm39)	missense	probably benign	0.17
R5436:Larp4b	UTSW	13	9,218,936 (GRCm39)	missense	possibly damaging	0.93
R5616:Larp4b	UTSW	13	9,208,695 (GRCm39)	missense	probably damaging	0.98
R5774:Larp4b	UTSW	13	9,220,679 (GRCm39)	splice site	probably null
R5818:Larp4b	UTSW	13	9,208,596 (GRCm39)	missense	probably benign
R6007:Larp4b	UTSW	13	9,218,793 (GRCm39)	missense	probably benign	0.13
R6248:Larp4b	UTSW	13	9,208,738 (GRCm39)	missense	probably benign	0.01
R6452:Larp4b	UTSW	13	9,197,503 (GRCm39)	missense	probably damaging	0.98
R6501:Larp4b	UTSW	13	9,218,829 (GRCm39)	missense	probably damaging	1.00
R7324:Larp4b	UTSW	13	9,208,616 (GRCm39)	missense	probably benign	0.04
R7737:Larp4b	UTSW	13	9,220,679 (GRCm39)	splice site	probably null
R7955:Larp4b	UTSW	13	9,186,816 (GRCm39)	missense	probably benign	0.00
R8877:Larp4b	UTSW	13	9,193,835 (GRCm39)	missense	probably benign	0.04
R8975:Larp4b	UTSW	13	9,195,537 (GRCm39)	missense	probably damaging	1.00
R9147:Larp4b	UTSW	13	9,186,819 (GRCm39)	missense	possibly damaging	0.51
R9191:Larp4b	UTSW	13	9,220,830 (GRCm39)	missense	probably benign	0.32
R9361:Larp4b	UTSW	13	9,199,937 (GRCm39)	missense	probably damaging	1.00
RF017:Larp4b	UTSW	13	9,173,946 (GRCm39)	missense	probably benign	0.05

Predicted Primers

PCR Primer
(F):5'- CCTGGGCCTAGAAGAAACTG -3'
(R):5'- GCTTGGCTAACAGCAAGCTG -3'

Sequencing Primer
(F):5'- AAGGGTGACTTAGCTAGAGTTCTGAC -3'
(R):5'- AGCTGCTCCAGGCTCACTAC -3'

Posted On

2019-11-12