Mutagenetix > Incidental Mutation

Incidental Mutation 'R7700:Tec'

593923

Institutional Source

Beutler Lab

Gene Symbol

Tec

Ensembl Gene

ENSMUSG00000029217

Gene Name

tec protein tyrosine kinase

Synonyms

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.087) question?

Stock #

R7700 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

72755716-72868483 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 72786024 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 116 (I116N)

Ref Sequence

ENSEMBL: ENSMUSP00000071836 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071944] [ENSMUST00000073843] [ENSMUST00000113594] [ENSMUST00000126481] [ENSMUST00000138842] [ENSMUST00000149533]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000071944
AA Change: I116N

PolyPhen 2 Score 0.598 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000071836
Gene: ENSMUSG00000029217
AA Change: I116N

Domain	Start	End	E-Value	Type
PH	5	113	2.13e-17	SMART
BTK	113	149	1.79e-21	SMART
low complexity region	158	177	N/A	INTRINSIC
SH3	181	237	7.06e-17	SMART
SH2	244	335	4.05e-28	SMART
TyrKc	369	618	2.13e-132	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000073843
AA Change: I116N

PolyPhen 2 Score 0.598 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000073509
Gene: ENSMUSG00000029217
AA Change: I116N

Domain	Start	End	E-Value	Type
PH	5	113	2.13e-17	SMART
BTK	113	149	1.79e-21	SMART
low complexity region	158	177	N/A	INTRINSIC
SH3	181	230	2.85e-3	SMART
SH2	222	313	9.96e-28	SMART
TyrKc	347	596	2.13e-132	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000113594
AA Change: I116N

PolyPhen 2 Score 0.598 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000109224
Gene: ENSMUSG00000029217
AA Change: I116N

Domain	Start	End	E-Value	Type
PH	5	113	2.13e-17	SMART
BTK	113	149	1.79e-21	SMART
low complexity region	158	177	N/A	INTRINSIC
SH3	181	237	7.06e-17	SMART
SH2	244	335	4.05e-28	SMART
TyrKc	369	618	2.13e-132	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000126481
AA Change: I116N

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000123606
Gene: ENSMUSG00000029217
AA Change: I116N

Domain	Start	End	E-Value	Type
PH	5	113	2.13e-17	SMART
BTK	113	149	1.79e-21	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000138842

SMART Domains

Protein: ENSMUSP00000120155
Gene: ENSMUSG00000029217

Domain	Start	End	E-Value	Type
Pfam:PH	5	98	1.6e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000149533

SMART Domains

Protein: ENSMUSP00000123258
Gene: ENSMUSG00000029217

Domain	Start	End	E-Value	Type
Pfam:PH	5	98	1.6e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000155342

SMART Domains

Protein: ENSMUSP00000118980
Gene: ENSMUSG00000029217

Domain	Start	End	E-Value	Type
BTK	2	33	8.62e-15	SMART

Meta Mutation Damage Score

0.2143

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (85/85)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the Tec family of non-receptor protein-tyrosine kinases containing a pleckstrin homology domain. Tec family kinases are involved in the intracellular signaling mechanisms of cytokine receptors, lymphocyte surface antigens, heterotrimeric G-protein coupled receptors, and integrin molecules. They are also key players in the regulation of the immune functions. Tec kinase is an integral component of T cell signaling and has a distinct role in T cell activation. This gene may be associated with myelodysplastic syndrome. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit a minor reduction in platetet aggregation in response to threshold concentrations of collagen-related peptide or collagen. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700011I03Rik	A	G	18: 57,563,316		probably null	Het
1810009A15Rik	T	C	19: 8,890,053	L72P	probably benign	Het
4930407I10Rik	C	A	15: 82,064,105	H734Q	probably benign	Het
4932438A13Rik	T	A	3: 36,974,172	N2329K	possibly damaging	Het
4932438A13Rik	C	T	3: 37,026,154	S267L	probably benign	Het
Acadl	A	G	1: 66,838,363	V343A	possibly damaging	Het
Acot4	A	T	12: 84,043,237	D236V	probably damaging	Het
App	T	A	16: 85,040,309		probably null	Het
Arfgef1	G	A	1: 10,194,411	T470I	possibly damaging	Het
Arhgef5	T	C	6: 43,274,757	I814T	probably benign	Het
Atr	A	T	9: 95,875,690	R968*	probably null	Het
C130060K24Rik	T	A	6: 65,452,956	I212N	probably benign	Het
Capn7	C	T	14: 31,352,444	T268I	probably benign	Het
Cbwd1	A	G	19: 24,942,681		probably null	Het
Csmd2	G	T	4: 128,545,756		probably null	Het
Cubn	A	T	2: 13,348,178	F1916L	probably benign	Het
Cubn	A	G	2: 13,489,917	V107A	possibly damaging	Het
Cyp11b1	T	A	15: 74,835,842	T473S	probably damaging	Het
Cyr61	C	T	3: 145,648,692	G155R	probably damaging	Het
Dip2c	T	G	13: 9,659,311	S1396A	probably benign	Het
Dopey2	T	G	16: 93,798,761		probably null	Het
Dyrk1b	T	C	7: 28,184,312	Y198H	probably damaging	Het
Echdc2	G	T	4: 108,174,077	R206L	probably benign	Het
Ep400	C	T	5: 110,696,032	R1594Q	unknown	Het
Esyt1	T	A	10: 128,515,854		probably benign	Het
Fmnl2	G	A	2: 53,036,508	R69Q		Het
Fry	T	A	5: 150,405,327	H1308Q	probably damaging	Het
Fyb2	T	A	4: 105,010,454	D667E	probably benign	Het
Gimap7	T	A	6: 48,723,857	Y126N	possibly damaging	Het
Gm1979	A	T	5: 26,000,180	W266R	probably damaging	Het
Gm28042	T	A	2: 120,039,716	M712K	possibly damaging	Het
Gm3238	A	G	10: 77,770,635	*231R	probably null	Het
Gm5592	C	A	7: 41,286,407	A111E	probably damaging	Het
Gm7694	A	G	1: 170,301,148	*271Q	probably null	Het
Gm9195	A	C	14: 72,455,902		probably null	Het
Ift81	T	C	5: 122,594,560	M304V	possibly damaging	Het
Igfals	T	C	17: 24,880,574	L213P	probably damaging	Het
Ints3	G	A	3: 90,421,804	P83S	probably benign	Het
Kcna10	T	G	3: 107,195,540	S496A	probably damaging	Het
Kmt2d	G	A	15: 98,843,719	A4520V	unknown	Het
Lemd3	A	T	10: 120,978,090	Y413N	probably damaging	Het
Lgr6	T	C	1: 134,996,032	N453S	probably damaging	Het
Lmtk3	A	C	7: 45,792,574	D352A	probably damaging	Het
Lrrc4c	T	C	2: 97,630,679	M550T	possibly damaging	Het
Maml2	A	T	9: 13,621,089	Q533L		Het
Mdn1	T	A	4: 32,741,344	D3815E	probably damaging	Het
Megf8	C	T	7: 25,329,928	A299V	possibly damaging	Het
Meis3	G	T	7: 16,177,556	E59D	probably benign	Het
Mppe1	A	G	18: 67,225,704	*398R	probably null	Het
Mtmr7	G	A	8: 40,606,884	A62V	possibly damaging	Het
Mtus1	T	A	8: 41,083,969	T237S	possibly damaging	Het
Ndfip2	T	A	14: 105,287,759	V158E	possibly damaging	Het
Nrbp2	T	G	15: 76,090,897	T53P	probably damaging	Het
Nrde2	G	A	12: 100,130,835	P902L	probably benign	Het
Olfr1383	A	G	11: 49,524,554	Y277C	probably damaging	Het
Olfr509	T	A	7: 108,645,672	K301N	probably damaging	Het
Olfr739	T	A	14: 50,425,335	M272K	probably benign	Het
Olfr771	T	C	10: 129,160,055	M310V	probably benign	Het
Pcdha1	A	G	18: 36,931,062	T260A	probably damaging	Het
Pdlim1	T	G	19: 40,249,658	K98N	probably damaging	Het
Pdxk	A	T	10: 78,443,930		probably null	Het
Phrf1	G	A	7: 141,254,929	G207R	unknown	Het
Pik3r6	A	G	11: 68,528,563	K124R	probably damaging	Het
Polr2b	T	A	5: 77,340,421	F823I	probably benign	Het
Prss58	T	C	6: 40,895,388	I234V	probably damaging	Het
Ptpn14	A	T	1: 189,865,411	N766I	probably benign	Het
Repin1	T	A	6: 48,597,822	S562T	probably damaging	Het
Rgr	C	T	14: 37,044,595	D165N	probably damaging	Het
Rho	T	C	6: 115,935,239	F221L	probably damaging	Het
Rictor	C	T	15: 6,772,154	S441L	probably benign	Het
Rnase2a	A	G	14: 51,255,791	I39T	probably damaging	Het
Rpl13a	T	G	7: 45,127,236	I43L	probably benign	Het
Rpp30	T	C	19: 36,089,158	V97A	probably benign	Het
Scube3	T	C	17: 28,167,049	Y755H	probably damaging	Het
Sec24a	A	T	11: 51,712,257	V788E	probably damaging	Het
Spns2	A	T	11: 72,489,617	L60*	probably null	Het
Strc	T	C	2: 121,371,748	N1213S	possibly damaging	Het
Tll1	A	T	8: 64,093,954	D319E	probably benign	Het
Tmem121b	T	C	6: 120,493,427	T110A	unknown	Het
Tmem232	T	A	17: 65,265,218	I593F	probably damaging	Het
Tpp2	A	G	1: 43,970,466	I487V	probably benign	Het
Ubr4	C	A	4: 139,408,867	C934*	probably null	Het
Vmn1r68	A	G	7: 10,527,632	Y180H	probably benign	Het
Vmn2r25	T	C	6: 123,839,923	D233G	possibly damaging	Het
Wdr6	A	G	9: 108,576,361	W108R	possibly damaging	Het

Other mutations in Tec

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00230:Tec	APN	5	72768768	missense	probably damaging	1.00
IGL00980:Tec	APN	5	72786798	missense	probably damaging	1.00
IGL01986:Tec	APN	5	72782005	nonsense	probably null
IGL02505:Tec	APN	5	72789244	missense	probably damaging	1.00
IGL02522:Tec	APN	5	72789172	missense	probably benign	0.01
IGL02527:Tec	APN	5	72779415	splice site	probably null
IGL03292:Tec	APN	5	72757364	missense	probably null	0.98
development	UTSW	5	72782177	critical splice acceptor site	probably null
technocrat	UTSW	5	72782012	missense	probably null	0.98
IGL02988:Tec	UTSW	5	72768747	missense	possibly damaging	0.95
PIT4696001:Tec	UTSW	5	72773835	missense	possibly damaging	0.73
R0254:Tec	UTSW	5	72763556	splice site	probably benign
R0254:Tec	UTSW	5	72783738	missense	probably benign	0.12
R0646:Tec	UTSW	5	72823497	missense	probably damaging	1.00
R1122:Tec	UTSW	5	72779449	missense	probably damaging	0.96
R1495:Tec	UTSW	5	72786755	missense	probably damaging	1.00
R1617:Tec	UTSW	5	72782105	missense	probably damaging	0.97
R3905:Tec	UTSW	5	72760362	missense	probably damaging	1.00
R3953:Tec	UTSW	5	72782177	critical splice acceptor site	probably null
R3954:Tec	UTSW	5	72782177	critical splice acceptor site	probably null
R3955:Tec	UTSW	5	72782177	critical splice acceptor site	probably null
R3981:Tec	UTSW	5	72823599	utr 5 prime	probably benign
R4061:Tec	UTSW	5	72823409	unclassified	probably benign
R4389:Tec	UTSW	5	72782007	missense	probably benign
R4507:Tec	UTSW	5	72760358	missense	probably damaging	1.00
R4689:Tec	UTSW	5	72823637	start gained	probably benign
R4702:Tec	UTSW	5	72783731	missense	possibly damaging	0.71
R4776:Tec	UTSW	5	72768776	missense	probably benign	0.38
R4911:Tec	UTSW	5	72756351	missense	probably benign	0.05
R4923:Tec	UTSW	5	72782022	nonsense	probably null
R4932:Tec	UTSW	5	72760393	nonsense	probably null
R5595:Tec	UTSW	5	72768744	missense	possibly damaging	0.91
R7211:Tec	UTSW	5	72782012	missense	probably null	0.98
R7404:Tec	UTSW	5	72763618	missense	probably damaging	1.00
R7465:Tec	UTSW	5	72773880	missense	probably damaging	1.00
R7526:Tec	UTSW	5	72786019	missense	probably benign
R7548:Tec	UTSW	5	72760350	missense	probably damaging	1.00
R7699:Tec	UTSW	5	72786024	missense	possibly damaging	0.60
R8021:Tec	UTSW	5	72757469	missense	probably benign	0.03
R8217:Tec	UTSW	5	72764259	missense	probably benign	0.13
R8704:Tec	UTSW	5	72768762	missense	probably damaging	1.00
R9287:Tec	UTSW	5	72768774	missense	probably damaging	1.00
R9731:Tec	UTSW	5	72782096	missense	probably benign	0.01
Z1177:Tec	UTSW	5	72768707	missense	probably damaging	1.00
Z1177:Tec	UTSW	5	72782015	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- GCTGTATCTGCCCTGTAGTG -3'
(R):5'- GAGAACCATCTAGCTGCTCTG -3'

Sequencing Primer
(F):5'- GTATCTGCCCTGTAGTGTCCTC -3'
(R):5'- GAACCATCTAGCTGCTCTGAATATTG -3'

Posted On

2019-11-12