Mutagenetix > Incidental Mutation

Incidental Mutation 'R7706:Chst10'

594260

Institutional Source

Beutler Lab

Gene Symbol

Chst10

Ensembl Gene

ENSMUSG00000026080

Gene Name

carbohydrate sulfotransferase 10

Synonyms

ST, Hnk-1st

MMRRC Submission

045767-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.262) question?

Stock #

R7706 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

38902948-38937242 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 38905106 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Asparagine at position 200 (Y200N)

Ref Sequence

ENSEMBL: ENSMUSP00000027249 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027249] [ENSMUST00000192948] [ENSMUST00000193441] [ENSMUST00000194361] [ENSMUST00000194657]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000027249
AA Change: Y200N

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000027249
Gene: ENSMUSG00000026080
AA Change: Y200N

Domain	Start	End	E-Value	Type
transmembrane domain	23	45	N/A	INTRINSIC
Pfam:Sulfotransfer_2	129	367	7.1e-54	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000192948
AA Change: Y93N

PolyPhen 2 Score 0.972 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000141470
Gene: ENSMUSG00000026080
AA Change: Y93N

Domain	Start	End	E-Value	Type
Pfam:Sulfotransfer_2	22	238	2.5e-45	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000193441

SMART Domains

Protein: ENSMUSP00000142028
Gene: ENSMUSG00000026080

Domain	Start	End	E-Value	Type
transmembrane domain	23	45	N/A	INTRINSIC
Pfam:Sulfotransfer_2	129	196	2.1e-9	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000194361
AA Change: Y196N

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000141295
Gene: ENSMUSG00000026080
AA Change: Y196N

Domain	Start	End	E-Value	Type
signal peptide	1	36	N/A	INTRINSIC
Pfam:Sulfotransfer_2	125	363	1.3e-51	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000194657

SMART Domains

Protein: ENSMUSP00000141481
Gene: ENSMUSG00000026080

Domain	Start	End	E-Value	Type
transmembrane domain	23	45	N/A	INTRINSIC

Meta Mutation Damage Score

0.9169

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

98% (52/53)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This protein encoded by this gene transfers sulfate to the C-3 hydroxyl of terminal glucuronic acid of protein- and lipid-linked oligosaccharides. This protein was first identified as a sulfotransferase that acts on the human natural killer-1 (HNK-1) glycan; HNK-1 is a carbohydrate involved in neurodevelopment and synaptic plasticity.[provided by RefSeq, Feb 2011]
PHENOTYPE: Homozygous mutation of this gene results in altered synaptic transmission and long term potentiation. Mutant animals exhibit impaired spatial learning and long term memory deficits. Mice homozygous for a different knock-out allele exhibit reduced male and female fertility. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1600014C23Rik	G	A	17: 46,044,583 (GRCm39)	T46I	unknown	Het
Arhgef1	G	A	7: 24,616,306 (GRCm39)	D317N	probably damaging	Het
Atxn7l2	T	C	3: 108,114,719 (GRCm39)	D109G	probably damaging	Het
B4galnt3	C	A	6: 120,195,913 (GRCm39)	V305L	probably benign	Het
C9	T	A	15: 6,488,402 (GRCm39)	N85K	probably benign	Het
Cacna1g	T	C	11: 94,305,867 (GRCm39)	I1941V	probably benign	Het
Capn15	A	G	17: 26,183,125 (GRCm39)	V518A	probably benign	Het
Ciao3	T	C	17: 26,001,226 (GRCm39)	*493Q	probably null	Het
Cir1	A	G	2: 73,142,823 (GRCm39)	S4P	probably damaging	Het
Cish	G	A	9: 107,177,840 (GRCm39)	R172Q	probably benign	Het
Cnot10	A	T	9: 114,422,506 (GRCm39)	N693K	probably damaging	Het
Ddx6	A	G	9: 44,538,939 (GRCm39)	D249G	probably damaging	Het
Dennd6b	T	C	15: 89,069,447 (GRCm39)	D528G	probably benign	Het
Dmtf1	T	A	5: 9,174,489 (GRCm39)	T484S	possibly damaging	Het
Dnaaf5	T	C	5: 139,138,596 (GRCm39)	V259A	probably damaging	Het
Dzip1l	A	T	9: 99,519,589 (GRCm39)	S39C	probably damaging	Het
Efcab8	T	A	2: 153,623,695 (GRCm39)	M60K		Het
Eml2	T	A	7: 18,920,035 (GRCm39)	V113D	possibly damaging	Het
Fnip1	A	T	11: 54,406,325 (GRCm39)	I1141F	probably benign	Het
Gm7298	T	A	6: 121,712,570 (GRCm39)	S127R	probably damaging	Het
Hcn2	G	A	10: 79,570,017 (GRCm39)	R622Q	possibly damaging	Het
Ift172	C	T	5: 31,423,723 (GRCm39)	W746*	probably null	Het
Irs1	A	G	1: 82,265,412 (GRCm39)	Y935H	probably damaging	Het
Kctd17	CAGCTGGAGGAGC	CAGC	15: 78,321,113 (GRCm39)		probably benign	Het
Klhl20	T	C	1: 160,936,827 (GRCm39)	I183V	probably benign	Het
Krt1	AAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCAC	AAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCAC	15: 101,758,813 (GRCm39)		probably benign	Het
Lalba	T	C	15: 98,379,474 (GRCm39)	D103G	probably damaging	Het
Lpin3	T	C	2: 160,747,210 (GRCm39)	L822P	probably damaging	Het
Lrrc38	G	A	4: 143,076,845 (GRCm39)	C36Y	probably damaging	Het
Ly6e	T	C	15: 74,830,183 (GRCm39)	S46P	possibly damaging	Het
Nav2	T	C	7: 49,244,067 (GRCm39)	I2098T	probably benign	Het
Nipbl	T	C	15: 8,381,010 (GRCm39)	E594G	probably benign	Het
Or52k2	T	A	7: 102,253,853 (GRCm39)	H97Q	probably benign	Het
Parn	T	C	16: 13,425,117 (GRCm39)	D432G	probably damaging	Het
Pcdh20	A	G	14: 88,704,793 (GRCm39)	S836P	probably damaging	Het
Pcmtd2	C	T	2: 181,496,868 (GRCm39)	R282C	probably damaging	Het
Ppp2r3c	A	G	12: 55,328,490 (GRCm39)	I425T	probably benign	Het
Samm50	T	A	15: 84,085,081 (GRCm39)		probably null	Het
Sars1	C	T	3: 108,338,780 (GRCm39)		probably null	Het
Senp8	A	G	9: 59,645,121 (GRCm39)	Y12H	possibly damaging	Het
Slc13a4	T	C	6: 35,247,290 (GRCm39)	I577V	possibly damaging	Het
Srr	T	G	11: 74,803,961 (GRCm39)		probably null	Het
Steap2	T	A	5: 5,732,967 (GRCm39)	N19I	possibly damaging	Het
Sucla2	A	G	14: 73,806,433 (GRCm39)	Y168C	probably damaging	Het
Tha1	T	C	11: 117,760,281 (GRCm39)	Q275R	probably damaging	Het
Trim56	T	C	5: 137,143,510 (GRCm39)	N2S	probably benign	Het
Tubgcp6	T	A	15: 88,988,426 (GRCm39)	H849L	probably benign	Het
Uevld	A	G	7: 46,597,775 (GRCm39)	I72T	possibly damaging	Het
Ybx1	A	G	4: 119,136,164 (GRCm39)	*323Q	probably null	Het
Zfp354b	C	T	11: 50,819,390 (GRCm39)		probably null	Het
Zfp36l2	A	T	17: 84,494,346 (GRCm39)	L97Q	probably benign	Het
Zfp729a	T	A	13: 67,771,612 (GRCm39)	R78S	possibly damaging	Het

Other mutations in Chst10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01947:Chst10	APN	1	38,904,646 (GRCm39)	missense	probably damaging	1.00
R0142:Chst10	UTSW	1	38,910,810 (GRCm39)	missense	probably damaging	1.00
R0513:Chst10	UTSW	1	38,904,844 (GRCm39)	missense	probably damaging	1.00
R1163:Chst10	UTSW	1	38,910,783 (GRCm39)	missense	probably damaging	1.00
R1464:Chst10	UTSW	1	38,904,772 (GRCm39)	missense	probably damaging	1.00
R1464:Chst10	UTSW	1	38,904,772 (GRCm39)	missense	probably damaging	1.00
R2129:Chst10	UTSW	1	38,904,776 (GRCm39)	missense	probably benign	0.41
R4163:Chst10	UTSW	1	38,910,904 (GRCm39)	missense	probably benign	0.01
R4712:Chst10	UTSW	1	38,904,922 (GRCm39)	missense	probably damaging	1.00
R5328:Chst10	UTSW	1	38,935,043 (GRCm39)	start gained	probably benign
R5469:Chst10	UTSW	1	38,904,608 (GRCm39)	missense	probably damaging	1.00
R6311:Chst10	UTSW	1	38,907,128 (GRCm39)	missense	probably damaging	1.00
R6395:Chst10	UTSW	1	38,910,770 (GRCm39)	missense	probably damaging	1.00
R7156:Chst10	UTSW	1	38,913,088 (GRCm39)	missense	probably damaging	0.98
R7789:Chst10	UTSW	1	38,923,532 (GRCm39)	missense	probably benign	0.03
R7941:Chst10	UTSW	1	38,910,772 (GRCm39)	missense	probably damaging	1.00
R8039:Chst10	UTSW	1	38,905,112 (GRCm39)	nonsense	probably null
R8252:Chst10	UTSW	1	38,923,433 (GRCm39)	missense	probably benign	0.00
R9482:Chst10	UTSW	1	38,907,116 (GRCm39)	missense	probably damaging	1.00
R9595:Chst10	UTSW	1	38,913,029 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GTAGCGCACAAAATCTTCAAACTG -3'
(R):5'- CTCAGAGGCTTCCTGGTTTG -3'

Sequencing Primer
(F):5'- TTCAAACTGGATCCCCCGGG -3'
(R):5'- CCTCACCTGTAGAATGGGTTG -3'

Posted On

2019-11-12