Mutagenetix > Incidental Mutation

Incidental Mutation 'R7726:Palm2'

595484

Institutional Source

Beutler Lab

Gene Symbol

Palm2

Ensembl Gene

ENSMUSG00000090053

Gene Name

paralemmin 2

Synonyms

53-H12, pEN70

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.112) question?

Stock #

R7726 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

57434247-57712016 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 57709876 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Proline to Serine at position 274 (P274S)

Ref Sequence

ENSEMBL: ENSMUSP00000099968 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098066] [ENSMUST00000102904] [ENSMUST00000102905] [ENSMUST00000126465] [ENSMUST00000142556]

AlphaFold

Q8BR92

Predicted Effect

probably benign
Transcript: ENSMUST00000098066

SMART Domains

Protein: ENSMUSP00000095674
Gene: ENSMUSG00000089945

Domain	Start	End	E-Value	Type
Pfam:Paralemmin	67	138	6.3e-23	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000102904
AA Change: P274S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000099968
Gene: ENSMUSG00000090053
AA Change: P274S

Domain	Start	End	E-Value	Type
Pfam:Paralemmin	66	376	8e-55	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000102905
AA Change: P274S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000099969
Gene: ENSMUSG00000090053
AA Change: P274S

Domain	Start	End	E-Value	Type
Pfam:Paralemmin	67	376	5.8e-109	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000126465

SMART Domains

Protein: ENSMUSP00000130230
Gene: ENSMUSG00000089945

Domain	Start	End	E-Value	Type
Pfam:Paralemmin	67	138	6.3e-23	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142556

SMART Domains

Protein: ENSMUSP00000129817
Gene: ENSMUSG00000090053

Domain	Start	End	E-Value	Type
Pfam:Paralemmin	66	136	8.7e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000150412

SMART Domains

Protein: ENSMUSP00000117466
Gene: ENSMUSG00000089945

Domain	Start	End	E-Value	Type
low complexity region	15	28	N/A	INTRINSIC
low complexity region	35	59	N/A	INTRINSIC
Pfam:Paralemmin	115	269	6.5e-23	PFAM
low complexity region	396	407	N/A	INTRINSIC
low complexity region	457	471	N/A	INTRINSIC
coiled coil region	499	557	N/A	INTRINSIC
Pfam:AKAP2_C	847	1129	1.9e-17	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

100% (65/65)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931408C20Rik	C	A	1: 26,684,498	A534S	probably benign	Het
A230050P20Rik	T	C	9: 20,873,165	Y182H	possibly damaging	Het
Adam34	T	G	8: 43,651,171	N479T	probably damaging	Het
Add3	C	G	19: 53,239,461	L526V	probably damaging	Het
Alas1	T	C	9: 106,246,951	T3A	probably benign	Het
Arap3	C	T	18: 37,989,467	D579N	probably damaging	Het
Armc6	C	A	8: 70,222,598	D326Y	probably damaging	Het
Atp6v1e2	G	A	17: 86,944,385	T195I	probably damaging	Het
Atrnl1	A	G	19: 57,702,072	E904G	probably damaging	Het
Bhlhe40	T	A	6: 108,662,598	D112E	probably benign	Het
Brf1	T	G	12: 112,964,245	K438T	probably benign	Het
Cabs1	A	T	5: 87,980,286	E265D	probably damaging	Het
Ccdc162	T	A	10: 41,553,075	M1937L	probably benign	Het
Cd55b	A	T	1: 130,411,493	S299R	possibly damaging	Het
Chordc1	A	G	9: 18,302,214	*120W	probably null	Het
Col17a1	C	A	19: 47,655,190		probably null	Het
Cpne8	A	T	15: 90,501,418	I469K	possibly damaging	Het
Crtac1	G	T	19: 42,302,251	S337*	probably null	Het
Cx3cl1	T	C	8: 94,780,239	S291P	probably damaging	Het
Dhx36	G	T	3: 62,488,968	Q423K	probably benign	Het
Eif3h	G	T	15: 51,786,823	Q322K	possibly damaging	Het
Ero1lb	A	G	13: 12,605,833	*494W	probably null	Het
Exph5	G	A	9: 53,373,175	V519I	possibly damaging	Het
Fam184a	C	A	10: 53,633,706	E126*	probably null	Het
Fam208a	C	A	14: 27,447,497	N338K	probably damaging	Het
Fam222b	A	G	11: 78,153,751	D46G	probably damaging	Het
Fbxl6	C	A	15: 76,535,886	R509L	probably damaging	Het
Fgf14	T	C	14: 124,136,244	Y86C	probably damaging	Het
Fras1	A	T	5: 96,712,451	I2119F	probably benign	Het
Gm14085	A	G	2: 122,486,733	E25G	probably damaging	Het
Gpr37	G	A	6: 25,669,117	T576I	possibly damaging	Het
Hnrnpul2	G	T	19: 8,831,280	R702L	possibly damaging	Het
Iqgap1	T	C	7: 80,757,456	N342S	probably benign	Het
Kcnh6	T	C	11: 106,017,575	V339A	probably benign	Het
Klk1b9	A	T	7: 43,978,416	N46I	possibly damaging	Het
Kndc1	C	A	7: 139,939,838	S1703R	possibly damaging	Het
Lyn	C	A	4: 3,756,428	Y306*	probably null	Het
Manba	C	T	3: 135,518,009	T219M	probably benign	Het
Mastl	T	C	2: 23,140,795		probably null	Het
Med15	T	G	16: 17,655,174	M550L	possibly damaging	Het
Men1	G	A	19: 6,337,282		probably null	Het
Mettl11b	A	G	1: 163,703,184	C229R	probably benign	Het
Msh4	C	T	3: 153,866,320		probably null	Het
Myh6	G	T	14: 54,965,365	D32E	probably damaging	Het
Ntn4	A	G	10: 93,733,682	D419G	possibly damaging	Het
Nup155	C	T	15: 8,122,139	P393S	probably damaging	Het
Olfr1389	T	A	11: 49,430,900	C141*	probably null	Het
Olfr1415	A	T	1: 92,491,307	F149L	probably benign	Het
Papss2	A	T	19: 32,634,003		probably null	Het
Pcdhgc3	T	C	18: 37,806,879	V111A	possibly damaging	Het
Pcnx2	C	T	8: 125,850,330	V988I	probably benign	Het
Pom121	C	T	5: 135,378,148	G1178S	probably damaging	Het
Prss33	A	G	17: 23,834,229	C213R	probably damaging	Het
Scap	G	A	9: 110,378,367		probably null	Het
Sirpb1c	T	A	3: 15,848,386	I10F	possibly damaging	Het
Spink5	T	C	18: 43,963,352	L16P	probably damaging	Het
Stk4	T	G	2: 164,110,226	M1R	probably null	Het
Stub1	A	T	17: 25,831,132	Y253*	probably null	Het
Tbce	A	G	13: 14,029,290	V29A	probably damaging	Het
Tchhl1	A	G	3: 93,471,758	R590G	probably benign	Het
Tmem173	C	T	18: 35,735,265	A261T	probably damaging	Het
Ubr4	C	T	4: 139,458,920	P613L	unknown	Het
Vmn2r3	G	T	3: 64,275,518	C253*	probably null	Het
Wfdc8	C	A	2: 164,599,986	E215D	possibly damaging	Het
Zfp874b	T	C	13: 67,473,856	D441G	probably benign	Het
Zscan4d	G	T	7: 11,165,242	P36Q	possibly damaging	Het

Other mutations in Palm2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02736:Palm2	APN	4	57709721	missense	probably damaging	0.96
PIT4305001:Palm2	UTSW	4	57638029	missense	possibly damaging	0.94
R0158:Palm2	UTSW	4	57709649	missense	possibly damaging	0.96
R0244:Palm2	UTSW	4	57710177	missense	possibly damaging	0.74
R0763:Palm2	UTSW	4	57688441	missense	probably damaging	1.00
R0800:Palm2	UTSW	4	57709650	missense	probably benign	0.06
R1861:Palm2	UTSW	4	57709468	missense	probably damaging	0.97
R1895:Palm2	UTSW	4	57638068	missense	probably benign	0.01
R4600:Palm2	UTSW	4	57709954	missense	probably benign	0.26
R6320:Palm2	UTSW	4	57710173	missense	probably damaging	1.00
R6365:Palm2	UTSW	4	57709675	nonsense	probably null
R6983:Palm2	UTSW	4	57709973	missense	probably damaging	1.00
R7090:Palm2	UTSW	4	57648042	missense	probably benign	0.00
R7744:Palm2	UTSW	4	57709519	missense	probably damaging	0.97
R7946:Palm2	UTSW	4	57710045	missense	probably damaging	1.00
R8702:Palm2	UTSW	4	57709489	nonsense	probably null
R8836:Palm2	UTSW	4	57709916	missense	probably benign	0.01
R9215:Palm2	UTSW	4	57709595	missense	probably damaging	0.97
R9652:Palm2	UTSW	4	57710125	missense	possibly damaging	0.51
X0065:Palm2	UTSW	4	57709805	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- ACGGAGTCCACAAATTAAGCG -3'
(R):5'- CCGTCGATTGTGGACACATC -3'

Sequencing Primer
(F):5'- GTCGAGCTTCAGAAGACACATGTC -3'
(R):5'- GGACACATCCGTCACTGTC -3'

Posted On

2019-11-12