Incidental Mutation 'R7728:Harbi1'
ID 595611
Institutional Source Beutler Lab
Gene Symbol Harbi1
Ensembl Gene ENSMUSG00000027243
Gene Name harbinger transposase derived 1
Synonyms D230010M03Rik
MMRRC Submission 045784-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.094) question?
Stock # R7728 (G1)
Quality Score 225.009
Status Validated
Chromosome 2
Chromosomal Location 91541197-91551890 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 91542626 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 29 (D29G)
Ref Sequence ENSEMBL: ENSMUSP00000088098 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028678] [ENSMUST00000076803] [ENSMUST00000090608] [ENSMUST00000111322] [ENSMUST00000128140] [ENSMUST00000140183] [ENSMUST00000142692]
AlphaFold Q8BR93
Predicted Effect probably benign
Transcript: ENSMUST00000028678
SMART Domains Protein: ENSMUSP00000028678
Gene: ENSMUSG00000027244

DomainStartEndE-ValueType
Pfam:ATG13 77 195 1.5e-10 PFAM
low complexity region 252 269 N/A INTRINSIC
low complexity region 423 442 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000076803
SMART Domains Protein: ENSMUSP00000076081
Gene: ENSMUSG00000027244

DomainStartEndE-ValueType
Pfam:ATG13 17 195 1.1e-35 PFAM
low complexity region 386 405 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000090608
AA Change: D29G

PolyPhen 2 Score 0.803 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000088098
Gene: ENSMUSG00000027243
AA Change: D29G

DomainStartEndE-ValueType
Pfam:Plant_tran 122 309 6.6e-8 PFAM
Pfam:DDE_Tnp_4 148 300 1.7e-40 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000111322
AA Change: D29G

PolyPhen 2 Score 0.763 (Sensitivity: 0.85; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000106954
Gene: ENSMUSG00000027243
AA Change: D29G

DomainStartEndE-ValueType
Pfam:DDE_Tnp_4 148 226 1.5e-17 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000128140
AA Change: D29G

PolyPhen 2 Score 0.803 (Sensitivity: 0.84; Specificity: 0.93)
Predicted Effect possibly damaging
Transcript: ENSMUST00000140183
AA Change: D29G

PolyPhen 2 Score 0.803 (Sensitivity: 0.84; Specificity: 0.93)
Predicted Effect probably benign
Transcript: ENSMUST00000142692
AA Change: D29G

PolyPhen 2 Score 0.059 (Sensitivity: 0.94; Specificity: 0.84)
SMART Domains Protein: ENSMUSP00000121420
Gene: ENSMUSG00000027243
AA Change: D29G

DomainStartEndE-ValueType
Pfam:DDE_Tnp_4 148 234 1.1e-17 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 99.0%
Validation Efficiency 100% (66/66)
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700017B05Rik G A 9: 57,163,822 (GRCm39) P851S probably damaging Het
2210408I21Rik T A 13: 77,464,596 (GRCm39) L931Q possibly damaging Het
Abcg3 T G 5: 105,083,944 (GRCm39) I609L probably benign Het
Acly A T 11: 100,407,623 (GRCm39) F242L probably damaging Het
Acly C T 11: 100,410,513 (GRCm39) G155D probably benign Het
Acsl5 T A 19: 55,276,285 (GRCm39) L370* probably null Het
Arhgef17 G A 7: 100,579,275 (GRCm39) P558S probably benign Het
Bhlha9 T A 11: 76,563,915 (GRCm39) S181T possibly damaging Het
Birc6 A G 17: 74,929,100 (GRCm39) T2331A probably benign Het
C1ra G A 6: 124,494,684 (GRCm39) E316K probably benign Het
Ccdc7b A T 8: 129,799,171 (GRCm39) R83W unknown Het
Churc1 T A 12: 76,820,052 (GRCm39) N20K probably benign Het
Clec9a T C 6: 129,392,198 (GRCm39) S63P possibly damaging Het
Cndp2 T A 18: 84,690,202 (GRCm39) M247L probably benign Het
Cpvl C T 6: 53,902,275 (GRCm39) S329N probably benign Het
Cracd T C 5: 77,005,316 (GRCm39) V559A unknown Het
Csmd1 A T 8: 16,281,285 (GRCm39) W747R probably damaging Het
Dhx40 A T 11: 86,662,759 (GRCm39) D644E probably damaging Het
Disp2 A T 2: 118,621,961 (GRCm39) N898Y probably benign Het
Dnah3 G A 7: 119,538,051 (GRCm39) H666Y probably damaging Het
Dnajc2 C T 5: 21,975,538 (GRCm39) D222N possibly damaging Het
Epha5 A T 5: 84,215,267 (GRCm39) M826K possibly damaging Het
Fam13a T C 6: 58,931,284 (GRCm39) D432G possibly damaging Het
Fkbp6 A G 5: 135,368,398 (GRCm39) L276P probably damaging Het
Gars1 G T 6: 55,027,371 (GRCm39) W155L probably damaging Het
Gm12258 C A 11: 58,750,518 (GRCm39) H564Q unknown Het
Gm3127 A G 14: 15,425,832 (GRCm39) D79G possibly damaging Het
H2-Q10 T A 17: 35,781,735 (GRCm39) I119N probably damaging Het
Hp1bp3 T A 4: 137,953,307 (GRCm39) M155K probably damaging Het
Itpr3 T G 17: 27,317,088 (GRCm39) M781R probably damaging Het
Kat7 T C 11: 95,190,907 (GRCm39) K101E probably benign Het
Kif7 A G 7: 79,360,478 (GRCm39) I299T possibly damaging Het
Krt34 A G 11: 99,930,811 (GRCm39) probably null Het
Krt81 A G 15: 101,358,087 (GRCm39) Y389H probably damaging Het
Lrrc36 A T 8: 106,176,130 (GRCm39) E168V probably benign Het
Lrrk1 A G 7: 65,912,463 (GRCm39) V1699A probably benign Het
Mdh1b T A 1: 63,754,429 (GRCm39) S380C probably benign Het
Mlkl A G 8: 112,060,251 (GRCm39) L45P probably damaging Het
Mmp13 T A 9: 7,274,004 (GRCm39) D159E probably benign Het
Nanp A G 2: 150,872,835 (GRCm39) V31A possibly damaging Het
Nbeal1 T C 1: 60,283,983 (GRCm39) S846P probably damaging Het
Neb G A 2: 52,073,311 (GRCm39) R5982C probably damaging Het
Nebl G T 2: 17,375,325 (GRCm39) F93L Het
Or11h6 G A 14: 50,879,849 (GRCm39) G31E probably benign Het
Pcdhb11 A T 18: 37,556,530 (GRCm39) N620I probably damaging Het
Pcdhgb2 A G 18: 37,824,260 (GRCm39) Y417C probably damaging Het
Pwp2 T C 10: 78,014,395 (GRCm39) T402A probably benign Het
Ralgapb T C 2: 158,324,423 (GRCm39) probably null Het
Rexo4 G A 2: 26,854,242 (GRCm39) A30V probably benign Het
Rrs1 T A 1: 9,616,623 (GRCm39) M292K possibly damaging Het
Shroom3 C A 5: 92,831,566 (GRCm39) P14Q possibly damaging Het
Slc16a10 T A 10: 39,916,754 (GRCm39) I383F probably damaging Het
Slco1a8 C A 6: 141,933,436 (GRCm39) E470* probably null Het
Slk C A 19: 47,609,255 (GRCm39) P736Q probably damaging Het
St6galnac2 T A 11: 116,570,811 (GRCm39) H259L probably benign Het
Stambpl1 T G 19: 34,213,721 (GRCm39) S317A possibly damaging Het
Syvn1 A G 19: 6,101,235 (GRCm39) T429A unknown Het
Tbc1d9 A T 8: 83,985,979 (GRCm39) E828V probably damaging Het
Tmtc2 A C 10: 105,107,358 (GRCm39) probably null Het
Trmt11 A G 10: 30,463,497 (GRCm39) I206T possibly damaging Het
Trp53bp1 A C 2: 121,038,380 (GRCm39) L1436R probably damaging Het
Ttll5 C T 12: 86,003,406 (GRCm39) R1095W probably benign Het
Utp20 A G 10: 88,634,203 (GRCm39) F831S probably damaging Het
Vmn2r109 T A 17: 20,773,117 (GRCm39) Q501H probably damaging Het
Zcchc17 A G 4: 130,230,812 (GRCm39) probably null Het
Zfhx3 A G 8: 109,678,201 (GRCm39) M3084V probably benign Het
Zfp81 T C 17: 33,555,791 (GRCm39) N12S possibly damaging Het
Other mutations in Harbi1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00474:Harbi1 APN 2 91,542,971 (GRCm39) missense probably damaging 1.00
R0670:Harbi1 UTSW 2 91,542,880 (GRCm39) missense probably damaging 1.00
R0673:Harbi1 UTSW 2 91,542,880 (GRCm39) missense probably damaging 1.00
R3788:Harbi1 UTSW 2 91,550,952 (GRCm39) missense probably benign 0.10
R4296:Harbi1 UTSW 2 91,543,100 (GRCm39) missense possibly damaging 0.49
R6545:Harbi1 UTSW 2 91,542,640 (GRCm39) missense probably damaging 0.99
R7207:Harbi1 UTSW 2 91,542,790 (GRCm39) missense probably damaging 1.00
R7324:Harbi1 UTSW 2 91,551,044 (GRCm39) missense probably benign 0.16
R8218:Harbi1 UTSW 2 91,543,237 (GRCm39) missense probably benign
R9095:Harbi1 UTSW 2 91,542,980 (GRCm39) missense probably damaging 0.96
R9244:Harbi1 UTSW 2 91,543,040 (GRCm39) missense probably damaging 1.00
R9562:Harbi1 UTSW 2 91,542,698 (GRCm39) nonsense probably null
R9604:Harbi1 UTSW 2 91,542,689 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- TGTCAGAGCCATTTAACTGATGG -3'
(R):5'- TCATAGAGGCCTGGCTAATTCC -3'

Sequencing Primer
(F):5'- CAGAGCCATTTAACTGATGGTTAGC -3'
(R):5'- AGAGGCCTGGCTAATTCCAATTG -3'
Posted On 2019-11-12