Incidental Mutation 'R7730:Phf19'
ID595752
Institutional Source Beutler Lab
Gene Symbol Phf19
Ensembl Gene ENSMUSG00000026873
Gene NamePHD finger protein 19
Synonyms
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R7730 (G1)
Quality Score225.009
Status Not validated
Chromosome2
Chromosomal Location34893757-34914026 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 34895804 bp
ZygosityHeterozygous
Amino Acid Change Glutamic Acid to Valine at position 551 (E551V)
Ref Sequence ENSEMBL: ENSMUSP00000028232 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028228] [ENSMUST00000028232] [ENSMUST00000047447] [ENSMUST00000113068] [ENSMUST00000184164]
Predicted Effect probably benign
Transcript: ENSMUST00000028228
SMART Domains Protein: ENSMUSP00000028228
Gene: ENSMUSG00000026870

DomainStartEndE-ValueType
transmembrane domain 12 34 N/A INTRINSIC
Pfam:CutA1 53 109 2.4e-16 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000028228
SMART Domains Protein: ENSMUSP00000144258
Gene: ENSMUSG00000026870

DomainStartEndE-ValueType
transmembrane domain 12 34 N/A INTRINSIC
Pfam:CutA1 54 110 9e-17 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000028232
AA Change: E551V

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000028232
Gene: ENSMUSG00000026873
AA Change: E551V

DomainStartEndE-ValueType
TUDOR 36 93 2.33e-8 SMART
PHD 96 147 2.87e-5 SMART
low complexity region 154 165 N/A INTRINSIC
PHD 195 245 2.11e-3 SMART
low complexity region 382 395 N/A INTRINSIC
low complexity region 442 464 N/A INTRINSIC
Pfam:Mtf2_C 529 576 5.2e-30 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000047447
SMART Domains Protein: ENSMUSP00000038452
Gene: ENSMUSG00000026870

DomainStartEndE-ValueType
transmembrane domain 12 34 N/A INTRINSIC
Pfam:CutA1 54 152 6e-33 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000113068
SMART Domains Protein: ENSMUSP00000108691
Gene: ENSMUSG00000026870

DomainStartEndE-ValueType
transmembrane domain 12 34 N/A INTRINSIC
Pfam:CutA1 53 154 1.9e-32 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000184164
SMART Domains Protein: ENSMUSP00000144477
Gene: ENSMUSG00000026870

DomainStartEndE-ValueType
transmembrane domain 12 34 N/A INTRINSIC
Pfam:CutA1 54 152 6e-33 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 54 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
9930111J21Rik1 T A 11: 48,947,876 H628L probably benign Het
Adam6a T A 12: 113,544,040 V11E possibly damaging Het
Amotl1 T G 9: 14,555,763 K660T possibly damaging Het
Ap4m1 T C 5: 138,172,815 I59T probably damaging Het
Brd3 T C 2: 27,456,955 Y389C probably damaging Het
C1ra G A 6: 124,517,725 E316K probably benign Het
Card11 C A 5: 140,885,996 R650L probably damaging Het
Cercam G A 2: 29,872,562 probably null Het
Cnst T C 1: 179,625,085 C673R probably damaging Het
Dld G T 12: 31,340,865 T194K probably benign Het
Dnah12 T A 14: 26,785,933 W1714R probably damaging Het
Dsg1a T G 18: 20,331,711 V421G possibly damaging Het
Fer1l4 G T 2: 156,048,934 P188Q probably benign Het
Gpr158 T C 2: 21,826,347 S753P probably damaging Het
Hdc A T 2: 126,594,082 M623K possibly damaging Het
Herc1 CAACCCTGGTAAC CAAC 9: 66,493,190 probably benign Het
Igf2r A T 17: 12,735,991 F203I probably damaging Het
Jag2 A T 12: 112,922,041 I145N probably damaging Het
Kcnt2 T A 1: 140,518,948 F694I probably benign Het
Lpl A T 8: 68,887,448 R32* probably null Het
Mcpt4 T A 14: 56,059,971 I243L probably benign Het
Mtf1 C A 4: 124,838,619 A490E possibly damaging Het
Mycbp2 A T 14: 103,123,355 M4497K probably damaging Het
Myog T C 1: 134,291,176 probably null Het
Nav2 T C 7: 49,572,397 S1757P probably damaging Het
Olfr830 T G 9: 18,875,413 F26V probably benign Het
Osmr T A 15: 6,824,482 I583F probably damaging Het
Plxnb2 A G 15: 89,162,330 M870T probably benign Het
Psat1 A G 19: 15,918,356 F83L probably damaging Het
Reep1 T A 6: 71,780,741 V108D possibly damaging Het
Rorc A G 3: 94,393,114 T455A probably benign Het
Serinc5 T G 13: 92,685,190 I169S probably damaging Het
Serpinb6c T C 13: 33,899,309 M41V probably damaging Het
Sgsm3 A T 15: 81,008,726 N335Y probably damaging Het
Slamf7 C T 1: 171,641,021 R101H possibly damaging Het
Slc17a4 A T 13: 23,900,520 L427* probably null Het
Slc35a5 T C 16: 45,143,883 Q329R probably damaging Het
Slc45a1 C T 4: 150,630,940 C656Y probably damaging Het
Srsf6 T C 2: 162,931,723 I18T probably damaging Het
Syn3 T G 10: 86,448,909 H109P probably benign Het
Synj2 T C 17: 6,016,287 V580A probably benign Het
Tbc1d9b T C 11: 50,135,915 V70A possibly damaging Het
Tc2n A G 12: 101,651,147 Y402H probably damaging Het
Tmbim4 T C 10: 120,223,862 C164R possibly damaging Het
Tnfrsf11b T A 15: 54,254,074 R262* probably null Het
Tnip1 T C 11: 54,937,979 K121E probably benign Het
Tut1 T C 19: 8,964,376 probably null Het
Uhrf2 T A 19: 30,075,101 C332S probably damaging Het
Vmn2r101 A G 17: 19,611,688 I649V possibly damaging Het
Vwa8 A G 14: 78,995,149 T644A probably benign Het
Zfhx2 T C 14: 55,066,900 H1209R possibly damaging Het
Zfp384 A G 6: 125,031,672 I306V probably benign Het
Zfp964 A G 8: 69,663,710 E320G possibly damaging Het
Zmym2 A T 14: 56,956,181 Y1151F possibly damaging Het
Other mutations in Phf19
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01528:Phf19 APN 2 34897107 missense probably damaging 0.99
IGL01862:Phf19 APN 2 34897055 critical splice donor site probably null
R0079:Phf19 UTSW 2 34895954 missense probably benign
R0183:Phf19 UTSW 2 34911202 missense probably damaging 1.00
R1289:Phf19 UTSW 2 34896030 missense probably benign
R1632:Phf19 UTSW 2 34911619 missense probably damaging 1.00
R1829:Phf19 UTSW 2 34911769 missense probably benign 0.00
R2057:Phf19 UTSW 2 34899608 missense probably benign 0.06
R2475:Phf19 UTSW 2 34895795 missense probably benign
R3039:Phf19 UTSW 2 34905522 missense probably benign 0.26
R3803:Phf19 UTSW 2 34899658 missense probably damaging 0.99
R3804:Phf19 UTSW 2 34899658 missense probably damaging 0.99
R4885:Phf19 UTSW 2 34899706 missense probably damaging 0.99
R5759:Phf19 UTSW 2 34897123 missense probably damaging 1.00
R6061:Phf19 UTSW 2 34897117 missense probably damaging 1.00
R6949:Phf19 UTSW 2 34904131 missense probably damaging 1.00
R7080:Phf19 UTSW 2 34898712 intron probably null
Predicted Primers PCR Primer
(F):5'- GGATGTCCTGTTTCACCACCAC -3'
(R):5'- CTGACAGCCAAAGTGCACAG -3'

Sequencing Primer
(F):5'- TGTTTCACCACCACCACCC -3'
(R):5'- CCCTGCGAGCAAAGCAAAGG -3'
Posted On2019-11-12