Incidental Mutation 'R7733:Atrnl1'
ID |
596031 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Atrnl1
|
Ensembl Gene |
ENSMUSG00000054843 |
Gene Name |
attractin like 1 |
Synonyms |
Alp |
MMRRC Submission |
045789-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.182)
|
Stock # |
R7733 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
19 |
Chromosomal Location |
57599466-58121775 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 57690420 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Valine to Alanine
at position 876
(V876A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000076514
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000077282]
|
AlphaFold |
Q6A051 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000077282
AA Change: V876A
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
SMART Domains |
Protein: ENSMUSP00000076514 Gene: ENSMUSG00000054843 AA Change: V876A
Domain | Start | End | E-Value | Type |
low complexity region
|
25 |
32 |
N/A |
INTRINSIC |
EGF
|
61 |
90 |
5.71e-1 |
SMART |
CUB
|
92 |
208 |
1.43e-11 |
SMART |
EGF
|
209 |
244 |
1.95e1 |
SMART |
Pfam:EGF_2
|
248 |
279 |
5.8e-7 |
PFAM |
Pfam:Kelch_5
|
350 |
391 |
2.1e-9 |
PFAM |
Pfam:Kelch_6
|
354 |
401 |
5.8e-8 |
PFAM |
Pfam:Kelch_4
|
465 |
517 |
4.3e-7 |
PFAM |
Pfam:Kelch_1
|
519 |
573 |
2.7e-6 |
PFAM |
PSI
|
613 |
656 |
3.38e-1 |
SMART |
PSI
|
665 |
708 |
2e-3 |
SMART |
PSI
|
714 |
759 |
1.72e-2 |
SMART |
CLECT
|
747 |
872 |
2.86e-20 |
SMART |
PSI
|
888 |
938 |
6.26e-5 |
SMART |
PSI
|
941 |
1011 |
1.73e-7 |
SMART |
EGF_Lam
|
1013 |
1056 |
1.07e-5 |
SMART |
low complexity region
|
1157 |
1173 |
N/A |
INTRINSIC |
transmembrane domain
|
1229 |
1251 |
N/A |
INTRINSIC |
low complexity region
|
1261 |
1272 |
N/A |
INTRINSIC |
low complexity region
|
1326 |
1339 |
N/A |
INTRINSIC |
|
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 99.3%
|
Validation Efficiency |
100% (83/83) |
MGI Phenotype |
PHENOTYPE: Mice homozygous for a null allele exhibit normal coat coloring and normal brain morphology. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 82 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
5530400C23Rik |
T |
A |
6: 133,271,240 (GRCm39) |
S95T |
probably benign |
Het |
Abca8a |
A |
G |
11: 109,945,413 (GRCm39) |
F1070L |
probably benign |
Het |
Acsl3 |
G |
C |
1: 78,665,953 (GRCm39) |
|
probably null |
Het |
Adarb2 |
T |
A |
13: 8,802,644 (GRCm39) |
S640T |
possibly damaging |
Het |
Adgre5 |
T |
C |
8: 84,456,025 (GRCm39) |
D257G |
probably benign |
Het |
Adora2b |
A |
T |
11: 62,156,165 (GRCm39) |
I205F |
possibly damaging |
Het |
Asb14 |
A |
G |
14: 26,634,309 (GRCm39) |
M505V |
probably benign |
Het |
AU040320 |
A |
G |
4: 126,729,322 (GRCm39) |
N495D |
possibly damaging |
Het |
Bcam |
A |
T |
7: 19,494,313 (GRCm39) |
V361E |
probably benign |
Het |
Ccdc7a |
T |
A |
8: 129,719,533 (GRCm39) |
E247V |
probably damaging |
Het |
Cd84 |
T |
A |
1: 171,668,226 (GRCm39) |
M1K |
probably null |
Het |
Cfap43 |
C |
T |
19: 47,886,432 (GRCm39) |
R61H |
possibly damaging |
Het |
Clec4a1 |
A |
G |
6: 122,909,109 (GRCm39) |
D159G |
possibly damaging |
Het |
Ctcfl |
C |
T |
2: 172,958,985 (GRCm39) |
R247Q |
probably benign |
Het |
Ctdnep1 |
G |
A |
11: 69,880,835 (GRCm39) |
R236Q |
probably damaging |
Het |
Cwf19l2 |
A |
T |
9: 3,450,066 (GRCm39) |
H589L |
probably benign |
Het |
Cyp2u1 |
G |
T |
3: 131,096,676 (GRCm39) |
A34E |
probably benign |
Het |
Cyp4x1 |
A |
G |
4: 114,977,391 (GRCm39) |
S281P |
possibly damaging |
Het |
Dag1 |
T |
C |
9: 108,086,047 (GRCm39) |
T365A |
probably benign |
Het |
Dhx57 |
A |
T |
17: 80,572,503 (GRCm39) |
|
probably null |
Het |
Dnajb1 |
T |
G |
8: 84,335,006 (GRCm39) |
S16A |
probably benign |
Het |
Dsc2 |
A |
T |
18: 20,181,372 (GRCm39) |
L145Q |
probably benign |
Het |
Dsc2 |
G |
C |
18: 20,181,373 (GRCm39) |
L145V |
probably benign |
Het |
Eefsec |
T |
C |
6: 88,353,202 (GRCm39) |
T156A |
possibly damaging |
Het |
Eif6 |
T |
A |
2: 155,665,152 (GRCm39) |
D169V |
probably benign |
Het |
Ell3 |
C |
A |
2: 121,273,001 (GRCm39) |
G3V |
possibly damaging |
Het |
Eprs1 |
A |
T |
1: 185,129,358 (GRCm39) |
H615L |
probably benign |
Het |
Fbxw10 |
A |
G |
11: 62,764,223 (GRCm39) |
Y630C |
unknown |
Het |
Fcgbpl1 |
A |
T |
7: 27,839,390 (GRCm39) |
D401V |
probably damaging |
Het |
G6pc2 |
C |
T |
2: 69,050,527 (GRCm39) |
Q51* |
probably null |
Het |
Glt8d1 |
C |
T |
14: 30,723,935 (GRCm39) |
|
probably benign |
Het |
Gpr4 |
T |
C |
7: 18,956,635 (GRCm39) |
Y186H |
probably damaging |
Het |
Grhpr |
T |
C |
4: 44,981,494 (GRCm39) |
|
probably benign |
Het |
Gsdma3 |
A |
G |
11: 98,526,041 (GRCm39) |
H264R |
probably damaging |
Het |
Hcfc2 |
A |
G |
10: 82,575,013 (GRCm39) |
Y224C |
probably benign |
Het |
Helz2 |
A |
G |
2: 180,872,148 (GRCm39) |
F2608S |
possibly damaging |
Het |
Herc2 |
C |
T |
7: 55,838,412 (GRCm39) |
T3313M |
probably damaging |
Het |
Hmgcl |
A |
T |
4: 135,687,394 (GRCm39) |
H223L |
probably benign |
Het |
Igf2r |
A |
G |
17: 12,958,256 (GRCm39) |
V139A |
possibly damaging |
Het |
Iqcn |
A |
G |
8: 71,170,100 (GRCm39) |
T1397A |
possibly damaging |
Het |
Kif5a |
T |
A |
10: 127,072,609 (GRCm39) |
T727S |
probably benign |
Het |
Kifc1 |
G |
A |
17: 34,102,543 (GRCm39) |
R357W |
probably damaging |
Het |
Krt81 |
T |
A |
15: 101,361,395 (GRCm39) |
S62C |
probably damaging |
Het |
Lgi2 |
T |
C |
5: 52,695,873 (GRCm39) |
N362S |
probably benign |
Het |
Lig1 |
G |
T |
7: 13,030,157 (GRCm39) |
R378L |
possibly damaging |
Het |
Map3k13 |
C |
T |
16: 21,740,436 (GRCm39) |
R588C |
probably damaging |
Het |
Mov10l1 |
T |
A |
15: 88,909,004 (GRCm39) |
F1008L |
probably damaging |
Het |
Nr4a2 |
A |
G |
2: 57,002,333 (GRCm39) |
V40A |
probably benign |
Het |
Nrde2 |
A |
T |
12: 100,110,399 (GRCm39) |
C206S |
possibly damaging |
Het |
Or4f14d |
C |
T |
2: 111,960,386 (GRCm39) |
V257I |
probably benign |
Het |
Parp1 |
T |
C |
1: 180,427,777 (GRCm39) |
|
probably null |
Het |
Pcdhb12 |
A |
G |
18: 37,570,089 (GRCm39) |
T412A |
probably damaging |
Het |
Plekhh2 |
T |
A |
17: 84,890,952 (GRCm39) |
Y839* |
probably null |
Het |
Pnpla6 |
T |
A |
8: 3,572,660 (GRCm39) |
F316I |
probably benign |
Het |
Prcp |
C |
T |
7: 92,550,506 (GRCm39) |
T101M |
probably damaging |
Het |
Prex2 |
G |
T |
1: 11,252,183 (GRCm39) |
R1076L |
probably benign |
Het |
Prpf40b |
T |
C |
15: 99,206,224 (GRCm39) |
|
probably null |
Het |
Psd3 |
T |
G |
8: 68,573,568 (GRCm39) |
K204N |
possibly damaging |
Het |
Ptpro |
C |
A |
6: 137,391,284 (GRCm39) |
C801* |
probably null |
Het |
Ptprt |
A |
G |
2: 161,417,707 (GRCm39) |
V923A |
probably damaging |
Het |
Ptprz1 |
T |
A |
6: 23,000,383 (GRCm39) |
D824E |
probably benign |
Het |
Rasgrf1 |
A |
G |
9: 89,863,780 (GRCm39) |
D582G |
probably benign |
Het |
Rfc2 |
T |
C |
5: 134,622,070 (GRCm39) |
L183P |
probably damaging |
Het |
Rnf114 |
T |
C |
2: 167,354,438 (GRCm39) |
V173A |
probably damaging |
Het |
Scn3a |
T |
A |
2: 65,338,994 (GRCm39) |
I562F |
probably benign |
Het |
Setmar |
T |
C |
6: 108,053,088 (GRCm39) |
I194T |
probably damaging |
Het |
Sptb |
A |
T |
12: 76,644,695 (GRCm39) |
|
probably null |
Het |
Sptbn2 |
C |
G |
19: 4,799,040 (GRCm39) |
R2037G |
probably benign |
Het |
Sptlc3 |
G |
T |
2: 139,473,288 (GRCm39) |
M512I |
possibly damaging |
Het |
Svep1 |
C |
A |
4: 58,049,239 (GRCm39) |
A3423S |
probably benign |
Het |
Sycp1 |
T |
C |
3: 102,803,278 (GRCm39) |
T511A |
probably benign |
Het |
Synm |
T |
A |
7: 67,385,693 (GRCm39) |
|
probably null |
Het |
Tada1 |
C |
T |
1: 166,217,511 (GRCm39) |
P216L |
probably damaging |
Het |
Tas2r117 |
T |
A |
6: 132,780,138 (GRCm39) |
M92K |
probably benign |
Het |
Thoc2l |
T |
C |
5: 104,667,826 (GRCm39) |
F783L |
possibly damaging |
Het |
Thsd1 |
T |
C |
8: 22,748,737 (GRCm39) |
L536P |
probably damaging |
Het |
Timp2 |
T |
G |
11: 118,208,355 (GRCm39) |
|
probably null |
Het |
Trak1 |
T |
A |
9: 121,196,291 (GRCm39) |
V41D |
possibly damaging |
Het |
Ubqln3 |
T |
A |
7: 103,790,283 (GRCm39) |
L602F |
probably damaging |
Het |
Vmn2r59 |
A |
G |
7: 41,661,443 (GRCm39) |
F791L |
probably benign |
Het |
Wbp4 |
A |
G |
14: 79,714,480 (GRCm39) |
|
probably null |
Het |
Zng1 |
T |
C |
19: 24,918,158 (GRCm39) |
D204G |
probably damaging |
Het |
|
Other mutations in Atrnl1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00323:Atrnl1
|
APN |
19 |
57,680,249 (GRCm39) |
missense |
probably benign |
0.02 |
IGL00707:Atrnl1
|
APN |
19 |
57,661,697 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL00921:Atrnl1
|
APN |
19 |
57,690,585 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01410:Atrnl1
|
APN |
19 |
58,119,536 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01468:Atrnl1
|
APN |
19 |
57,688,144 (GRCm39) |
missense |
probably benign |
0.02 |
IGL01756:Atrnl1
|
APN |
19 |
57,641,380 (GRCm39) |
missense |
probably benign |
|
IGL01971:Atrnl1
|
APN |
19 |
57,741,715 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02019:Atrnl1
|
APN |
19 |
57,680,195 (GRCm39) |
splice site |
probably benign |
|
IGL02580:Atrnl1
|
APN |
19 |
57,703,008 (GRCm39) |
splice site |
probably benign |
|
IGL02649:Atrnl1
|
APN |
19 |
57,638,873 (GRCm39) |
splice site |
probably benign |
|
IGL02676:Atrnl1
|
APN |
19 |
57,680,316 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03276:Atrnl1
|
APN |
19 |
57,641,359 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL03379:Atrnl1
|
APN |
19 |
57,630,973 (GRCm39) |
missense |
probably benign |
0.02 |
Magnetogorsk
|
UTSW |
19 |
57,618,738 (GRCm39) |
missense |
probably damaging |
1.00 |
polar
|
UTSW |
19 |
57,641,382 (GRCm39) |
missense |
probably benign |
0.00 |
PIT4812001:Atrnl1
|
UTSW |
19 |
57,720,055 (GRCm39) |
missense |
probably benign |
0.08 |
R0109:Atrnl1
|
UTSW |
19 |
57,743,949 (GRCm39) |
missense |
possibly damaging |
0.78 |
R0308:Atrnl1
|
UTSW |
19 |
57,741,720 (GRCm39) |
missense |
probably benign |
0.04 |
R0394:Atrnl1
|
UTSW |
19 |
57,661,608 (GRCm39) |
missense |
probably benign |
0.10 |
R0734:Atrnl1
|
UTSW |
19 |
57,643,293 (GRCm39) |
missense |
probably damaging |
1.00 |
R0811:Atrnl1
|
UTSW |
19 |
57,661,573 (GRCm39) |
missense |
probably benign |
0.07 |
R0812:Atrnl1
|
UTSW |
19 |
57,661,573 (GRCm39) |
missense |
probably benign |
0.07 |
R1183:Atrnl1
|
UTSW |
19 |
57,638,725 (GRCm39) |
missense |
probably damaging |
0.97 |
R1213:Atrnl1
|
UTSW |
19 |
57,626,894 (GRCm39) |
missense |
probably benign |
0.25 |
R1344:Atrnl1
|
UTSW |
19 |
57,924,137 (GRCm39) |
critical splice donor site |
probably null |
|
R1418:Atrnl1
|
UTSW |
19 |
57,924,137 (GRCm39) |
critical splice donor site |
probably null |
|
R1707:Atrnl1
|
UTSW |
19 |
57,675,169 (GRCm39) |
missense |
probably benign |
0.00 |
R1748:Atrnl1
|
UTSW |
19 |
57,703,134 (GRCm39) |
missense |
probably damaging |
0.99 |
R2051:Atrnl1
|
UTSW |
19 |
57,680,281 (GRCm39) |
missense |
probably benign |
0.01 |
R2113:Atrnl1
|
UTSW |
19 |
57,744,048 (GRCm39) |
nonsense |
probably null |
|
R2130:Atrnl1
|
UTSW |
19 |
57,643,426 (GRCm39) |
missense |
probably damaging |
1.00 |
R3710:Atrnl1
|
UTSW |
19 |
57,645,546 (GRCm39) |
missense |
probably damaging |
1.00 |
R3916:Atrnl1
|
UTSW |
19 |
57,924,084 (GRCm39) |
missense |
possibly damaging |
0.82 |
R4524:Atrnl1
|
UTSW |
19 |
57,618,738 (GRCm39) |
missense |
probably damaging |
1.00 |
R4707:Atrnl1
|
UTSW |
19 |
57,617,590 (GRCm39) |
missense |
probably damaging |
0.97 |
R4712:Atrnl1
|
UTSW |
19 |
57,641,382 (GRCm39) |
missense |
probably benign |
0.00 |
R4784:Atrnl1
|
UTSW |
19 |
57,617,590 (GRCm39) |
missense |
probably damaging |
0.97 |
R4785:Atrnl1
|
UTSW |
19 |
57,617,590 (GRCm39) |
missense |
probably damaging |
0.97 |
R4798:Atrnl1
|
UTSW |
19 |
58,030,793 (GRCm39) |
missense |
probably benign |
|
R5172:Atrnl1
|
UTSW |
19 |
57,673,945 (GRCm39) |
nonsense |
probably null |
|
R5226:Atrnl1
|
UTSW |
19 |
57,638,767 (GRCm39) |
missense |
probably benign |
|
R5289:Atrnl1
|
UTSW |
19 |
57,645,514 (GRCm39) |
missense |
probably damaging |
1.00 |
R5372:Atrnl1
|
UTSW |
19 |
57,743,968 (GRCm39) |
missense |
probably benign |
|
R5737:Atrnl1
|
UTSW |
19 |
57,766,320 (GRCm39) |
missense |
possibly damaging |
0.84 |
R5782:Atrnl1
|
UTSW |
19 |
57,741,718 (GRCm39) |
missense |
possibly damaging |
0.95 |
R5826:Atrnl1
|
UTSW |
19 |
57,618,724 (GRCm39) |
nonsense |
probably null |
|
R6169:Atrnl1
|
UTSW |
19 |
57,630,895 (GRCm39) |
missense |
probably benign |
0.00 |
R6242:Atrnl1
|
UTSW |
19 |
57,630,910 (GRCm39) |
missense |
probably benign |
0.02 |
R6342:Atrnl1
|
UTSW |
19 |
57,626,942 (GRCm39) |
missense |
probably damaging |
1.00 |
R6372:Atrnl1
|
UTSW |
19 |
57,638,764 (GRCm39) |
missense |
probably benign |
0.01 |
R6811:Atrnl1
|
UTSW |
19 |
57,643,393 (GRCm39) |
missense |
probably damaging |
0.98 |
R6897:Atrnl1
|
UTSW |
19 |
58,030,800 (GRCm39) |
missense |
probably benign |
0.01 |
R7024:Atrnl1
|
UTSW |
19 |
57,626,882 (GRCm39) |
critical splice acceptor site |
probably null |
|
R7085:Atrnl1
|
UTSW |
19 |
57,680,289 (GRCm39) |
missense |
probably damaging |
1.00 |
R7144:Atrnl1
|
UTSW |
19 |
58,030,784 (GRCm39) |
missense |
probably damaging |
1.00 |
R7259:Atrnl1
|
UTSW |
19 |
57,924,038 (GRCm39) |
nonsense |
probably null |
|
R7289:Atrnl1
|
UTSW |
19 |
57,638,846 (GRCm39) |
missense |
probably benign |
0.13 |
R7310:Atrnl1
|
UTSW |
19 |
57,630,856 (GRCm39) |
missense |
possibly damaging |
0.69 |
R7372:Atrnl1
|
UTSW |
19 |
57,924,078 (GRCm39) |
missense |
possibly damaging |
0.47 |
R7432:Atrnl1
|
UTSW |
19 |
57,743,956 (GRCm39) |
missense |
probably damaging |
1.00 |
R7478:Atrnl1
|
UTSW |
19 |
57,684,744 (GRCm39) |
missense |
possibly damaging |
0.89 |
R7556:Atrnl1
|
UTSW |
19 |
57,643,278 (GRCm39) |
missense |
probably benign |
|
R7567:Atrnl1
|
UTSW |
19 |
57,687,955 (GRCm39) |
missense |
probably damaging |
0.98 |
R7608:Atrnl1
|
UTSW |
19 |
57,703,119 (GRCm39) |
missense |
probably damaging |
1.00 |
R7632:Atrnl1
|
UTSW |
19 |
57,618,738 (GRCm39) |
missense |
probably damaging |
1.00 |
R7655:Atrnl1
|
UTSW |
19 |
57,599,811 (GRCm39) |
nonsense |
probably null |
|
R7656:Atrnl1
|
UTSW |
19 |
57,599,811 (GRCm39) |
nonsense |
probably null |
|
R7718:Atrnl1
|
UTSW |
19 |
57,728,615 (GRCm39) |
nonsense |
probably null |
|
R7721:Atrnl1
|
UTSW |
19 |
57,684,763 (GRCm39) |
missense |
probably benign |
0.00 |
R7726:Atrnl1
|
UTSW |
19 |
57,690,504 (GRCm39) |
missense |
probably damaging |
1.00 |
R7774:Atrnl1
|
UTSW |
19 |
57,688,103 (GRCm39) |
missense |
probably damaging |
1.00 |
R8010:Atrnl1
|
UTSW |
19 |
57,670,878 (GRCm39) |
missense |
probably benign |
0.14 |
R8119:Atrnl1
|
UTSW |
19 |
57,630,895 (GRCm39) |
missense |
probably benign |
0.00 |
R9242:Atrnl1
|
UTSW |
19 |
57,645,660 (GRCm39) |
missense |
probably benign |
0.07 |
R9265:Atrnl1
|
UTSW |
19 |
57,766,359 (GRCm39) |
missense |
probably benign |
0.11 |
R9272:Atrnl1
|
UTSW |
19 |
57,643,420 (GRCm39) |
missense |
probably benign |
0.00 |
R9480:Atrnl1
|
UTSW |
19 |
57,690,420 (GRCm39) |
missense |
possibly damaging |
0.61 |
R9526:Atrnl1
|
UTSW |
19 |
57,617,551 (GRCm39) |
missense |
probably damaging |
0.99 |
R9672:Atrnl1
|
UTSW |
19 |
57,618,695 (GRCm39) |
missense |
possibly damaging |
0.87 |
R9673:Atrnl1
|
UTSW |
19 |
57,599,786 (GRCm39) |
start codon destroyed |
probably null |
0.04 |
RF021:Atrnl1
|
UTSW |
19 |
57,630,905 (GRCm39) |
missense |
probably benign |
0.00 |
|
Predicted Primers |
PCR Primer
(F):5'- CCCGGTCATTTGTGTTGAAATG -3'
(R):5'- AATGCCCTGGAGTGTTAAGTG -3'
Sequencing Primer
(F):5'- CATTAGTTGTAAGATCGGACGCCC -3'
(R):5'- TACTTACGCGAGCAGGTGG -3'
|
Posted On |
2019-11-12 |