Mutagenetix > Incidental Mutation

Incidental Mutation 'R7734:Scara5'

596085

Institutional Source

Beutler Lab

Gene Symbol

Scara5

Ensembl Gene

ENSMUSG00000022032

Gene Name

scavenger receptor class A, member 5

Synonyms

4933425F03Rik, 4932433F15Rik

MMRRC Submission

045790-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.080) question?

Stock #

R7734 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

65903852-66002275 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 65968600 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 291 (D291G)

Ref Sequence

ENSEMBL: ENSMUSP00000022610 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022610] [ENSMUST00000069226]

AlphaFold

Q8K299

Predicted Effect

possibly damaging
Transcript: ENSMUST00000022610
AA Change: D291G

PolyPhen 2 Score 0.845 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000022610
Gene: ENSMUSG00000022032
AA Change: D291G

Domain	Start	End	E-Value	Type
transmembrane domain	60	82	N/A	INTRINSIC
Pfam:Collagen	304	357	1.8e-8	PFAM
Pfam:Collagen	327	383	1.1e-8	PFAM
SR	389	489	5.5e-56	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000069226
AA Change: D291G

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000063391
Gene: ENSMUSG00000022032
AA Change: D291G

Domain	Start	End	E-Value	Type
transmembrane domain	60	82	N/A	INTRINSIC
Pfam:Collagen	304	360	1e-11	PFAM
Pfam:Collagen	329	386	1.9e-11	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous deletion of this gene results in decreased male fertility and lymphocytic infiltration of the stroma of various tissues, particularly in the lungs. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Anxa2	T	C	9: 69,398,764 (GRCm39)	Y333H	probably benign	Het
Arid1a	A	T	4: 133,408,679 (GRCm39)	F1558I	unknown	Het
Aste1	A	G	9: 105,274,678 (GRCm39)	D306G	probably damaging	Het
Atp2a2	A	G	5: 122,596,590 (GRCm39)	V843A	possibly damaging	Het
Atrip	T	A	9: 108,894,574 (GRCm39)	H451L	probably benign	Het
Cdc42bpb	T	C	12: 111,295,664 (GRCm39)	D200G	probably damaging	Het
Ceacam19	A	C	7: 19,620,520 (GRCm39)	M37R	probably benign	Het
Cemip	G	A	7: 83,606,872 (GRCm39)	R782*	probably null	Het
Cpe	A	T	8: 65,070,654 (GRCm39)	I197N	probably benign	Het
Csmd2	C	A	4: 128,445,850 (GRCm39)	P3307T		Het
Cyp4a12b	C	A	4: 115,268,937 (GRCm39)	Q20K	possibly damaging	Het
Dcaf1	T	C	9: 106,715,878 (GRCm39)	Y332H	probably damaging	Het
Dclk3	A	G	9: 111,298,163 (GRCm39)	H569R	probably damaging	Het
Dcp1b	A	G	6: 119,192,244 (GRCm39)	S387G	probably benign	Het
Ddx24	A	G	12: 103,383,819 (GRCm39)	M590T	possibly damaging	Het
Dixdc1	T	G	9: 50,613,268 (GRCm39)	Q229P	probably damaging	Het
Dnase1l3	T	C	14: 7,977,144 (GRCm38)	R181G	probably benign	Het
Dzip1l	A	T	9: 99,549,735 (GRCm39)	D735V	probably damaging	Het
Edem3	T	C	1: 151,694,336 (GRCm39)	S890P	probably benign	Het
Fuom	A	G	7: 139,679,455 (GRCm39)	L155P	unknown	Het
Gm6408	C	A	5: 146,421,160 (GRCm39)	S263*	probably null	Het
Helz	C	G	11: 107,576,248 (GRCm39)	S1814R	unknown	Het
Hrc	T	C	7: 44,986,100 (GRCm39)	L417P	probably benign	Het
Igdcc4	A	C	9: 65,039,035 (GRCm39)	H894P	probably damaging	Het
Lgr6	C	A	1: 134,930,981 (GRCm39)	V296L	probably damaging	Het
Map3k4	T	A	17: 12,482,998 (GRCm39)	Y573F	probably damaging	Het
Mest	T	C	6: 30,746,299 (GRCm39)	Y296H	unknown	Het
Mettl21a	C	T	1: 64,647,288 (GRCm39)	V90M	probably damaging	Het
Mfsd4b1	A	T	10: 39,883,374 (GRCm39)	N25K	probably damaging	Het
Mmd	T	A	11: 90,167,579 (GRCm39)	F203I	probably damaging	Het
Myo15a	G	A	11: 60,401,108 (GRCm39)	V3028M	probably benign	Het
Nlrp1a	T	A	11: 70,998,826 (GRCm39)	N859I	unknown	Het
Nrcam	T	C	12: 44,584,034 (GRCm39)	L36P	possibly damaging	Het
Nup107	C	A	10: 117,593,917 (GRCm39)	E759*	probably null	Het
Or14a259	A	G	7: 86,013,476 (GRCm39)	I23T	not run	Het
Pcdh7	T	G	5: 57,876,976 (GRCm39)	I177S	probably damaging	Het
Pde6a	T	C	18: 61,365,938 (GRCm39)	I221T	probably benign	Het
Ptpn13	A	T	5: 103,709,828 (GRCm39)	N1497I	probably damaging	Het
Rmc1	T	A	18: 12,322,320 (GRCm39)	I591N	possibly damaging	Het
Rpl4	T	A	9: 64,084,661 (GRCm39)	H245Q	probably benign	Het
Rsf1	C	CCACGGCGGG	7: 97,229,115 (GRCm39)		probably benign	Het
Septin14	T	A	5: 129,760,583 (GRCm39)	I422L	probably benign	Het
Serpina1e	T	C	12: 103,917,151 (GRCm39)	K173E	probably benign	Het
Slc5a1	C	T	5: 33,318,279 (GRCm39)	T644I	probably benign	Het
Slc6a13	A	T	6: 121,314,334 (GRCm39)	T590S	probably benign	Het
Smarca4	C	T	9: 21,578,658 (GRCm39)	T938I	possibly damaging	Het
Stxbp1	A	T	2: 32,691,832 (GRCm39)	D453E	probably benign	Het
Tcf12	C	A	9: 71,829,943 (GRCm39)	V173L	probably benign	Het
Tenm3	A	G	8: 49,099,368 (GRCm39)	C146R	probably damaging	Het
Trim11	T	C	11: 58,869,180 (GRCm39)	C39R	probably damaging	Het
Trim37	A	G	11: 87,068,821 (GRCm39)	Y389C	probably damaging	Het
Ttll8	C	T	15: 88,798,368 (GRCm39)	G789D	probably damaging	Het
Tubb2a	C	T	13: 34,258,776 (GRCm39)	S338N	probably benign	Het
Ulk2	G	A	11: 61,744,127 (GRCm39)	Q50*	probably null	Het
Urgcp	T	C	11: 5,666,406 (GRCm39)	D687G	probably benign	Het
Usp13	C	T	3: 32,892,054 (GRCm39)	H78Y	probably benign	Het
Vmn2r100	T	A	17: 19,742,296 (GRCm39)	D223E	probably benign	Het
Vwc2	G	A	11: 11,065,929 (GRCm39)	A6T	possibly damaging	Het

Other mutations in Scara5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00402:Scara5	APN	14	65,975,864 (GRCm39)	splice site	probably benign
IGL00772:Scara5	APN	14	65,908,011 (GRCm39)	utr 5 prime	probably benign
IGL01768:Scara5	APN	14	65,927,224 (GRCm39)	nonsense	probably null
IGL02081:Scara5	APN	14	65,968,104 (GRCm39)	missense	possibly damaging	0.96
IGL02280:Scara5	APN	14	65,968,227 (GRCm39)	missense	probably benign
IGL02795:Scara5	APN	14	65,968,129 (GRCm39)	missense	possibly damaging	0.72
IGL02887:Scara5	APN	14	66,000,278 (GRCm39)	missense	unknown
R0040:Scara5	UTSW	14	66,000,166 (GRCm39)	splice site	probably benign
R0605:Scara5	UTSW	14	65,997,097 (GRCm39)	missense	possibly damaging	0.85
R0735:Scara5	UTSW	14	65,968,468 (GRCm39)	missense	possibly damaging	0.85
R0925:Scara5	UTSW	14	66,000,167 (GRCm39)	critical splice acceptor site	probably benign
R1575:Scara5	UTSW	14	65,968,314 (GRCm39)	missense	probably benign	0.18
R1746:Scara5	UTSW	14	65,968,539 (GRCm39)	missense	probably benign
R1968:Scara5	UTSW	14	65,927,249 (GRCm39)	missense	possibly damaging	0.73
R4455:Scara5	UTSW	14	66,000,196 (GRCm39)	missense	probably benign	0.01
R4547:Scara5	UTSW	14	65,908,023 (GRCm39)	missense	possibly damaging	0.72
R4779:Scara5	UTSW	14	65,968,198 (GRCm39)	missense	probably benign	0.03
R5218:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5316:Scara5	UTSW	14	65,927,264 (GRCm39)	missense	possibly damaging	0.73
R5331:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5332:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5366:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5367:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5368:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5369:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5417:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5418:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5420:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5447:Scara5	UTSW	14	65,997,111 (GRCm39)	frame shift	probably null
R5473:Scara5	UTSW	14	65,977,788 (GRCm39)	missense	possibly damaging	0.84
R5580:Scara5	UTSW	14	65,968,528 (GRCm39)	missense	probably benign	0.02
R7995:Scara5	UTSW	14	65,997,057 (GRCm39)	missense	possibly damaging	0.53
R8090:Scara5	UTSW	14	65,979,586 (GRCm39)	nonsense	probably null
R8308:Scara5	UTSW	14	65,927,234 (GRCm39)	missense	probably damaging	0.97
R9036:Scara5	UTSW	14	66,000,197 (GRCm39)	missense	probably benign	0.24

Predicted Primers

PCR Primer
(F):5'- ACAGCCTGTCCTATGACGTG -3'
(R):5'- TCTGCTCCAGGGATGCTTACTG -3'

Sequencing Primer
(F):5'- TGTCCTATGACGTGGCCCTG -3'
(R):5'- AGGGTAGTTCACCCAACT -3'

Posted On

2019-11-12