Mutagenetix > Incidental Mutation

Incidental Mutation 'R7375:Psme4'

596139

Institutional Source

Beutler Lab

Gene Symbol

Psme4

Ensembl Gene

ENSMUSG00000040850

Gene Name

proteasome (prosome, macropain) activator subunit 4

Synonyms

MMRRC Submission

045458-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7375 (G1)

Quality Score

107.008

Status

Validated

Chromosome

Chromosomal Location

30721726-30830361 bp(+) (GRCm39)

Type of Mutation

splice site (113 bp from exon)

DNA Base Change (assembly)

T to A at 30722700 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041231]

AlphaFold

Q5SSW2

Predicted Effect

probably benign
Transcript: ENSMUST00000041231

SMART Domains

Protein: ENSMUSP00000045460
Gene: ENSMUSG00000040850

Domain	Start	End	E-Value	Type
low complexity region	2	19	N/A	INTRINSIC
low complexity region	122	133	N/A	INTRINSIC
Pfam:BLM10_mid	330	828	8.8e-119	PFAM
SCOP:d1b3ua_	1183	1716	3e-14	SMART
Pfam:DUF3437	1756	1843	5.3e-39	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000154757

SMART Domains

Protein: ENSMUSP00000119133
Gene: ENSMUSG00000040850

Domain	Start	End	E-Value	Type
low complexity region	131	142	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (59/59)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele show normal repair of DNA double-strand breaks but exhibit significantly reduced male fertility due to defects in spermatogenesis observed in both meiotic spermatocytes and postmeiotic haploid spermatids. [provided by MGI curators]

Allele List at MGI

All alleles(25) : Targeted, knock-out(1) Gene trapped(24)

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb4	A	G	5: 8,968,671 (GRCm39)	I337V	probably benign	Het
Abl2	A	G	1: 156,450,184 (GRCm39)	D117G	probably damaging	Het
Arhgap5	T	A	12: 52,563,365 (GRCm39)	L112*	probably null	Het
Brinp3	C	G	1: 146,777,748 (GRCm39)	L732V	possibly damaging	Het
Ccdc168	A	T	1: 44,099,694 (GRCm39)	I468N	possibly damaging	Het
Cfap91	T	A	16: 38,155,980 (GRCm39)	H81L	probably damaging	Het
Cmya5	T	G	13: 93,228,169 (GRCm39)	K2306N	probably damaging	Het
Col16a1	A	C	4: 129,959,294 (GRCm39)	K680T	unknown	Het
Col28a1	T	A	6: 7,998,499 (GRCm39)	T1137S	possibly damaging	Het
Crnn	A	T	3: 93,056,452 (GRCm39)	T413S	possibly damaging	Het
Csf1	A	G	3: 107,655,495 (GRCm39)	L512P	possibly damaging	Het
Dlx3	C	A	11: 95,011,461 (GRCm39)	A105D	possibly damaging	Het
Dnah3	T	G	7: 119,550,900 (GRCm39)	T161P	probably damaging	Het
Dnah7b	A	G	1: 46,342,794 (GRCm39)	D3435G	probably damaging	Het
Dpp10	A	G	1: 123,295,524 (GRCm39)	I541T	probably benign	Het
Efcc1	T	C	6: 87,728,838 (GRCm39)	V431A	possibly damaging	Het
Enpp5	T	C	17: 44,391,868 (GRCm39)	I99T	probably benign	Het
Gm11232	C	T	4: 71,675,583 (GRCm39)	W59*	probably null	Het
Gxylt2	A	T	6: 100,727,383 (GRCm39)	T166S	probably benign	Het
Herc6	A	T	6: 57,628,791 (GRCm39)		probably null	Het
Itga2	T	C	13: 115,005,753 (GRCm39)	I476V	probably benign	Het
Kcnq5	T	C	1: 21,539,710 (GRCm39)	T403A	possibly damaging	Het
Klhl42	A	G	6: 146,993,538 (GRCm39)	K170R	probably benign	Het
Klk13	T	C	7: 43,370,582 (GRCm39)		probably null	Het
Krt32	G	T	11: 99,972,050 (GRCm39)	R433S	probably benign	Het
Lrp1	G	T	10: 127,375,217 (GRCm39)	T4461N	probably damaging	Het
Mapk10	A	T	5: 103,124,256 (GRCm39)	M256K	probably null	Het
Mogat2	T	C	7: 98,872,905 (GRCm39)	K93R	probably damaging	Het
Myh1	G	T	11: 67,101,254 (GRCm39)	V677L	probably damaging	Het
Naip5	G	T	13: 100,356,205 (GRCm39)	Q1137K	not run	Het
Naip5	T	C	13: 100,356,204 (GRCm39)	Q1137R	probably benign	Het
Oog4	G	A	4: 143,165,544 (GRCm39)	T201M	possibly damaging	Het
Or4a70	C	T	2: 89,324,036 (GRCm39)	G207R	possibly damaging	Het
Pik3c2a	T	C	7: 115,975,621 (GRCm39)	T649A	probably damaging	Het
Plec	T	A	15: 76,061,555 (GRCm39)	H2794L	possibly damaging	Het
Pros1	T	A	16: 62,744,913 (GRCm39)	N509K	probably damaging	Het
Psme3ip1	G	A	8: 95,309,636 (GRCm39)	L119F	probably benign	Het
Ptprf	A	G	4: 118,070,011 (GRCm39)	V1457A	probably benign	Het
Rad50	A	G	11: 53,543,055 (GRCm39)		probably null	Het
Rfx5	C	T	3: 94,866,053 (GRCm39)	P451S	unknown	Het
Scpppq1	G	T	5: 104,219,123 (GRCm39)		probably null	Het
Sdk1	G	T	5: 141,984,598 (GRCm39)	V728L	probably benign	Het
Sfxn4	T	C	19: 60,847,112 (GRCm39)	D57G	probably benign	Het
Slc10a4	A	G	5: 73,169,650 (GRCm39)	D425G	probably benign	Het
Slc17a5	C	T	9: 78,495,174 (GRCm39)	A26T	probably benign	Het
Slc22a26	A	T	19: 7,760,509 (GRCm39)		probably null	Het
Slc22a30	A	G	19: 8,382,055 (GRCm39)	L72P	probably damaging	Het
Slco6c1	T	C	1: 97,009,146 (GRCm39)	T447A	possibly damaging	Het
Slco6d1	A	G	1: 98,349,172 (GRCm39)	N81S	probably damaging	Het
Stard9	T	C	2: 120,495,483 (GRCm39)		probably null	Het
Tecpr1	T	C	5: 144,145,417 (GRCm39)	E610G	possibly damaging	Het
Tmem81	G	T	1: 132,435,301 (GRCm39)	V36L	possibly damaging	Het
Trabd2b	G	T	4: 114,467,194 (GRCm39)	K474N	probably benign	Het
Tspan33	T	C	6: 29,713,519 (GRCm39)	F149L	probably benign	Het
Ttn	A	G	2: 76,606,683 (GRCm39)	Y18076H	probably damaging	Het
Utrn	G	A	10: 12,516,764 (GRCm39)	R2277C	probably damaging	Het
Vmn2r101	T	A	17: 19,831,652 (GRCm39)	D549E	probably damaging	Het
Vmn2r107	T	A	17: 20,576,138 (GRCm39)	I156K	probably benign	Het
Wwc2	T	G	8: 48,316,955 (GRCm39)	S713R	unknown	Het
Xndc1	C	A	7: 101,730,687 (GRCm39)		probably null	Het
Zfp810	A	G	9: 22,201,833 (GRCm39)		probably null	Het

Other mutations in Psme4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00228:Psme4	APN	11	30,765,710 (GRCm39)	critical splice donor site	probably null
IGL00401:Psme4	APN	11	30,771,079 (GRCm39)	splice site	probably benign
IGL00475:Psme4	APN	11	30,795,252 (GRCm39)	missense	probably benign	0.14
IGL00576:Psme4	APN	11	30,773,145 (GRCm39)	missense	possibly damaging	0.50
IGL00817:Psme4	APN	11	30,770,129 (GRCm39)	missense	probably benign	0.01
IGL01525:Psme4	APN	11	30,759,936 (GRCm39)	splice site	probably benign
IGL01862:Psme4	APN	11	30,762,038 (GRCm39)	nonsense	probably null
IGL02310:Psme4	APN	11	30,787,484 (GRCm39)	missense	probably benign	0.06
IGL02477:Psme4	APN	11	30,792,083 (GRCm39)	missense	probably damaging	0.99
IGL02545:Psme4	APN	11	30,791,586 (GRCm39)	missense	possibly damaging	0.81
IGL02608:Psme4	APN	11	30,770,944 (GRCm39)	missense	probably benign	0.34
IGL02621:Psme4	APN	11	30,798,131 (GRCm39)	missense	probably benign
IGL02822:Psme4	APN	11	30,798,204 (GRCm39)	unclassified	probably benign
IGL02833:Psme4	APN	11	30,800,715 (GRCm39)	unclassified	probably benign
IGL02964:Psme4	APN	11	30,741,095 (GRCm39)	nonsense	probably null
IGL03273:Psme4	APN	11	30,798,130 (GRCm39)	missense	probably damaging	1.00
IGL03348:Psme4	APN	11	30,826,796 (GRCm39)	missense	probably damaging	1.00
IGL03382:Psme4	APN	11	30,757,788 (GRCm39)	missense	possibly damaging	0.94
H2330:Psme4	UTSW	11	30,801,210 (GRCm39)	missense	probably benign	0.17
PIT4378001:Psme4	UTSW	11	30,771,079 (GRCm39)	splice site	probably benign
R0276:Psme4	UTSW	11	30,761,980 (GRCm39)	missense	probably damaging	1.00
R0462:Psme4	UTSW	11	30,798,117 (GRCm39)	missense	probably damaging	1.00
R0685:Psme4	UTSW	11	30,828,415 (GRCm39)	missense	probably damaging	1.00
R0766:Psme4	UTSW	11	30,757,687 (GRCm39)	splice site	probably null
R0830:Psme4	UTSW	11	30,757,797 (GRCm39)	missense	possibly damaging	0.53
R0940:Psme4	UTSW	11	30,765,264 (GRCm39)	missense	possibly damaging	0.53
R1018:Psme4	UTSW	11	30,754,310 (GRCm39)	missense	probably damaging	1.00
R1312:Psme4	UTSW	11	30,757,687 (GRCm39)	splice site	probably null
R1448:Psme4	UTSW	11	30,802,744 (GRCm39)	missense	probably damaging	1.00
R1713:Psme4	UTSW	11	30,756,310 (GRCm39)	missense	probably damaging	1.00
R1732:Psme4	UTSW	11	30,798,105 (GRCm39)	missense	probably benign	0.03
R1813:Psme4	UTSW	11	30,754,353 (GRCm39)	missense	probably benign	0.14
R1905:Psme4	UTSW	11	30,760,922 (GRCm39)	missense	probably damaging	1.00
R1907:Psme4	UTSW	11	30,760,922 (GRCm39)	missense	probably damaging	1.00
R1911:Psme4	UTSW	11	30,765,658 (GRCm39)	missense	probably benign	0.02
R1956:Psme4	UTSW	11	30,782,424 (GRCm39)	missense	probably damaging	0.99
R1974:Psme4	UTSW	11	30,769,011 (GRCm39)	missense	probably benign	0.00
R1980:Psme4	UTSW	11	30,782,615 (GRCm39)	missense	possibly damaging	0.84
R1986:Psme4	UTSW	11	30,780,352 (GRCm39)	missense	probably benign	0.01
R2046:Psme4	UTSW	11	30,767,723 (GRCm39)	splice site	probably benign
R2142:Psme4	UTSW	11	30,770,998 (GRCm39)	missense	possibly damaging	0.89
R2698:Psme4	UTSW	11	30,824,282 (GRCm39)	critical splice donor site	probably null
R2844:Psme4	UTSW	11	30,795,173 (GRCm39)	splice site	probably benign
R3807:Psme4	UTSW	11	30,806,027 (GRCm39)	splice site	probably null
R3876:Psme4	UTSW	11	30,806,068 (GRCm39)	missense	probably damaging	0.99
R4420:Psme4	UTSW	11	30,762,028 (GRCm39)	missense	possibly damaging	0.67
R4584:Psme4	UTSW	11	30,784,318 (GRCm39)	missense	probably damaging	1.00
R4615:Psme4	UTSW	11	30,784,287 (GRCm39)	missense	probably benign	0.02
R4714:Psme4	UTSW	11	30,782,573 (GRCm39)	missense	probably benign	0.02
R5008:Psme4	UTSW	11	30,806,896 (GRCm39)	intron	probably benign
R5109:Psme4	UTSW	11	30,741,095 (GRCm39)	nonsense	probably null
R5155:Psme4	UTSW	11	30,826,806 (GRCm39)	missense	probably damaging	1.00
R5199:Psme4	UTSW	11	30,803,272 (GRCm39)	missense	probably benign	0.00
R5205:Psme4	UTSW	11	30,782,666 (GRCm39)	intron	probably benign
R5452:Psme4	UTSW	11	30,741,168 (GRCm39)	missense	probably benign
R5491:Psme4	UTSW	11	30,765,246 (GRCm39)	missense	possibly damaging	0.63
R5685:Psme4	UTSW	11	30,759,837 (GRCm39)	missense	probably damaging	0.99
R5764:Psme4	UTSW	11	30,722,364 (GRCm39)	intron	probably benign
R5853:Psme4	UTSW	11	30,741,234 (GRCm39)	critical splice donor site	probably null
R5865:Psme4	UTSW	11	30,741,993 (GRCm39)	missense	possibly damaging	0.95
R5903:Psme4	UTSW	11	30,791,589 (GRCm39)	missense	probably benign	0.28
R5927:Psme4	UTSW	11	30,754,294 (GRCm39)	missense	possibly damaging	0.82
R6004:Psme4	UTSW	11	30,806,896 (GRCm39)	intron	probably benign
R6102:Psme4	UTSW	11	30,815,567 (GRCm39)	missense	probably damaging	1.00
R6247:Psme4	UTSW	11	30,803,245 (GRCm39)	missense	possibly damaging	0.60
R6527:Psme4	UTSW	11	30,782,175 (GRCm39)	missense	probably benign
R6750:Psme4	UTSW	11	30,803,203 (GRCm39)	missense	probably damaging	1.00
R6885:Psme4	UTSW	11	30,784,307 (GRCm39)	nonsense	probably null
R6939:Psme4	UTSW	11	30,787,291 (GRCm39)	missense	probably damaging	0.99
R6945:Psme4	UTSW	11	30,787,437 (GRCm39)	missense	probably benign	0.06
R7029:Psme4	UTSW	11	30,722,474 (GRCm39)	intron	probably benign
R7049:Psme4	UTSW	11	30,763,904 (GRCm39)	splice site	probably null
R7098:Psme4	UTSW	11	30,800,661 (GRCm39)	missense	probably damaging	0.99
R7107:Psme4	UTSW	11	30,798,105 (GRCm39)	missense	probably benign	0.03
R7223:Psme4	UTSW	11	30,824,226 (GRCm39)	missense	probably benign	0.33
R7319:Psme4	UTSW	11	30,757,790 (GRCm39)	missense	probably benign	0.00
R7410:Psme4	UTSW	11	30,765,279 (GRCm39)	nonsense	probably null
R7469:Psme4	UTSW	11	30,752,837 (GRCm39)	missense	probably benign	0.20
R7651:Psme4	UTSW	11	30,787,334 (GRCm39)	missense	probably damaging	0.98
R7679:Psme4	UTSW	11	30,828,425 (GRCm39)	missense	probably damaging	0.99
R7681:Psme4	UTSW	11	30,741,975 (GRCm39)	missense	possibly damaging	0.63
R7822:Psme4	UTSW	11	30,824,245 (GRCm39)	missense	probably benign
R8013:Psme4	UTSW	11	30,754,320 (GRCm39)	missense	probably benign	0.06
R8130:Psme4	UTSW	11	30,792,026 (GRCm39)	missense	probably damaging	1.00
R8323:Psme4	UTSW	11	30,793,532 (GRCm39)	missense	probably damaging	0.99
R8330:Psme4	UTSW	11	30,793,583 (GRCm39)	missense	probably benign	0.00
R8363:Psme4	UTSW	11	30,762,139 (GRCm39)	missense	probably damaging	1.00
R8491:Psme4	UTSW	11	30,722,161 (GRCm39)	missense	possibly damaging	0.90
R8690:Psme4	UTSW	11	30,787,319 (GRCm39)	missense	probably benign	0.00
R8696:Psme4	UTSW	11	30,759,896 (GRCm39)	missense	probably damaging	0.99
R8743:Psme4	UTSW	11	30,828,467 (GRCm39)	missense	probably damaging	1.00
R8998:Psme4	UTSW	11	30,788,957 (GRCm39)	missense	possibly damaging	0.78
R9241:Psme4	UTSW	11	30,815,576 (GRCm39)	missense	probably damaging	1.00
R9657:Psme4	UTSW	11	30,788,980 (GRCm39)	missense	probably benign	0.00
R9736:Psme4	UTSW	11	30,797,411 (GRCm39)	missense	probably damaging	0.99
R9744:Psme4	UTSW	11	30,765,294 (GRCm39)	critical splice donor site	probably null
R9746:Psme4	UTSW	11	30,826,868 (GRCm39)	nonsense	probably null
V5088:Psme4	UTSW	11	30,801,210 (GRCm39)	missense	probably benign	0.17
X0063:Psme4	UTSW	11	30,782,600 (GRCm39)	missense	possibly damaging	0.66
Z1176:Psme4	UTSW	11	30,793,522 (GRCm39)	missense	possibly damaging	0.87
Z1177:Psme4	UTSW	11	30,762,138 (GRCm39)	missense	probably damaging	1.00
Z1177:Psme4	UTSW	11	30,756,311 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTTTCTCTTGACGTGCCAGG -3'
(R):5'- GTCGTGACCGAGGAAATGTC -3'

Sequencing Primer
(F):5'- TCTTGACGTGCCAGGCTCTG -3'
(R):5'- TGTCACAACAGGAACATACACTTTTC -3'

Posted On

2019-11-21