Mutagenetix > Incidental Mutations

Incidental Mutation 'R7460:Ddx1'

596163

Institutional Source

Beutler Lab

Gene Symbol

Ddx1

Ensembl Gene

ENSMUSG00000037149

Gene Name

DEAD (Asp-Glu-Ala-Asp) box polypeptide 1

Synonyms

MMRRC Submission

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R7460 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

13216973-13249213 bp(-) (GRCm38)

Type of Mutation

splice site (6 bp from exon)

DNA Base Change (assembly)

A to G at 13231439 bp

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000065987 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071103]

Predicted Effect

probably null
Transcript: ENSMUST00000071103

SMART Domains

Protein: ENSMUSP00000065987
Gene: ENSMUSG00000037149

Domain	Start	End	E-Value	Type
DEXDc	21	444	1.95e-47	SMART
SPRY	130	246	1.91e-34	SMART
HELICc	520	610	8.28e-28	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (64/64)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein of unknown function. It shows high transcription levels in 2 retinoblastoma cell lines and in tissues of neuroectodermal origin. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1300017J02Rik	T	C	9: 103,254,648	N625D	probably benign	Het
Abi2	T	A	1: 60,434,307	V61D	probably damaging	Het
Agrn	C	A	4: 156,174,424	V915L	probably damaging	Het
Arhgap24	T	C	5: 102,892,346	V476A	probably benign	Het
Arhgef15	A	G	11: 68,947,035	L720P	probably damaging	Het
Atad2b	C	A	12: 4,952,660	R343S	probably benign	Het
Atxn3	T	A	12: 101,926,517	T313S	probably benign	Het
BC037034	G	A	5: 138,262,729	T218M	probably benign	Het
BC051665	T	C	13: 60,784,643	E76G	probably benign	Het
Birc2	A	T	9: 7,818,761	F610I	probably damaging	Het
Cdh16	A	T	8: 104,622,291	V58D	possibly damaging	Het
Cenpf	T	C	1: 189,654,050	D2011G	probably damaging	Het
Ddb1	T	C	19: 10,607,911		probably null	Het
Disp2	A	G	2: 118,789,780	H331R	probably damaging	Het
Dmxl1	A	G	18: 49,878,612	T1279A	probably benign	Het
Dync1i2	T	C	2: 71,250,886	I473T	probably damaging	Het
Fam114a1	T	G	5: 65,038,707	V520G	possibly damaging	Het
Fan1	T	A	7: 64,372,486	N340Y	probably damaging	Het
Fat2	T	A	11: 55,278,963	D2990V	probably damaging	Het
Fbxo18	C	T	2: 11,756,685	G597D	probably benign	Het
Fdxr	A	C	11: 115,276,854	S12A	probably benign	Het
Fgf14	T	A	14: 124,676,693	R9W	possibly damaging	Het
Gnat3	A	T	5: 17,999,658	D103V		Het
Hepacam2	G	A	6: 3,487,199	P53S	probably benign	Het
Jmjd1c	A	G	10: 67,217,036	T21A	probably benign	Het
Lama1	T	C	17: 67,767,018	C930R		Het
Lrp1b	T	C	2: 40,598,466	T4536A		Het
Lrrc27	T	A	7: 139,223,658	V166E	probably damaging	Het
Mapk10	C	T	5: 103,038,577	V90I	probably benign	Het
Mfsd14b	C	T	13: 65,072,023	G339D	probably damaging	Het
Mkl2	G	T	16: 13,400,976	Q495H	probably benign	Het
Mnt	T	A	11: 74,843,283	M580K	unknown	Het
Mrc1	T	C	2: 14,248,869	S234P	probably damaging	Het
Mrps5	G	A	2: 127,591,891	V75I	not run	Het
Myo10	A	G	15: 25,807,827	D1845G	probably damaging	Het
Olfr147	T	C	9: 38,403,353	S160P	possibly damaging	Het
Olfr19	C	A	16: 16,673,166	A272S	possibly damaging	Het
Olfr402	A	T	11: 74,155,846	I231F	probably damaging	Het
Olfr559	A	T	7: 102,723,821	M223K	probably benign	Het
Pdhx	G	A	2: 103,046,779	T95M	probably damaging	Het
Pigb	C	T	9: 73,038,675	V72I	probably damaging	Het
Prr7	C	A	13: 55,472,353	P110Q	unknown	Het
Psg22	A	G	7: 18,724,404	D340G	probably benign	Het
Ptprn2	T	C	12: 117,248,681	S908P	probably benign	Het
Ros1	T	C	10: 52,118,203	Y1348C	probably damaging	Het
Rspry1	T	C	8: 94,650,335	I506T	probably benign	Het
Ryr2	T	A	13: 11,705,710	Y2684F	probably benign	Het
Sdr16c6	A	G	4: 4,076,575		probably null	Het
Senp7	A	G	16: 56,173,182	T743A	possibly damaging	Het
Slc6a20b	T	C	9: 123,604,949	I275V	probably benign	Het
Slc6a7	A	G	18: 61,001,602	I467T	probably benign	Het
Tacc2	A	G	7: 130,624,633	D1016G	probably benign	Het
Thsd7a	A	G	6: 12,554,934	V317A		Het
Tle3	A	G	9: 61,413,084	H598R	probably damaging	Het
Tmem102	A	G	11: 69,804,123	L341P	probably damaging	Het
Tmem94	G	T	11: 115,786,256	R118L	possibly damaging	Het
Trhde	T	A	10: 114,413,263	D866V	probably damaging	Het
Ttn	A	G	2: 76,751,273	I23092T	probably damaging	Het
U2surp	C	A	9: 95,462,824	V944L	unknown	Het
Urgcp	T	C	11: 5,716,622	H615R	possibly damaging	Het
Vps45	T	A	3: 96,048,387	Y97F	probably benign	Het
Zc3h12c	T	C	9: 52,144,102	T136A	probably benign	Het
Zfp948	A	T	17: 21,588,415	H623L	probably damaging	Het

Other mutations in Ddx1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00725:Ddx1	APN	12	13227459	splice site	probably benign
IGL00725:Ddx1	APN	12	13245690	missense	probably damaging	1.00
IGL00958:Ddx1	APN	12	13240848	splice site	probably null
IGL01786:Ddx1	APN	12	13229136	missense	probably benign
IGL02832:Ddx1	APN	12	13227317	nonsense	probably null
IGL02983:Ddx1	APN	12	13223862	missense	probably damaging	1.00
R0201:Ddx1	UTSW	12	13223808	missense	probably damaging	1.00
R0931:Ddx1	UTSW	12	13237817	splice site	probably benign
R1434:Ddx1	UTSW	12	13237231	missense	probably benign	0.01
R1558:Ddx1	UTSW	12	13239541	missense	probably damaging	1.00
R1673:Ddx1	UTSW	12	13244966	critical splice donor site	probably null
R1854:Ddx1	UTSW	12	13229331	missense	probably benign	0.19
R2910:Ddx1	UTSW	12	13231440	splice site	probably null
R2911:Ddx1	UTSW	12	13231440	splice site	probably null
R4181:Ddx1	UTSW	12	13231503	nonsense	probably null
R4182:Ddx1	UTSW	12	13231503	nonsense	probably null
R4183:Ddx1	UTSW	12	13231503	nonsense	probably null
R4231:Ddx1	UTSW	12	13223857	missense	possibly damaging	0.74
R4234:Ddx1	UTSW	12	13223857	missense	possibly damaging	0.74
R4235:Ddx1	UTSW	12	13223857	missense	possibly damaging	0.74
R4243:Ddx1	UTSW	12	13240909	nonsense	probably null
R4717:Ddx1	UTSW	12	13240887	missense	probably damaging	1.00
R4821:Ddx1	UTSW	12	13239147	missense	probably damaging	1.00
R5032:Ddx1	UTSW	12	13223992	missense	probably damaging	1.00
R5082:Ddx1	UTSW	12	13220435	nonsense	probably null
R5528:Ddx1	UTSW	12	13229294	missense	probably damaging	1.00
R5997:Ddx1	UTSW	12	13237799	missense	probably damaging	1.00
R6398:Ddx1	UTSW	12	13245720	missense	probably damaging	1.00
R6891:Ddx1	UTSW	12	13236095	missense	probably benign	0.25
R7085:Ddx1	UTSW	12	13229355	missense	probably damaging	1.00
R7125:Ddx1	UTSW	12	13243863	missense	probably benign	0.18
R7307:Ddx1	UTSW	12	13223959	missense	probably damaging	1.00
R7388:Ddx1	UTSW	12	13225455	missense	probably null	1.00
R7393:Ddx1	UTSW	12	13230353	missense	probably benign	0.03
R8310:Ddx1	UTSW	12	13224279	intron	probably benign
R8479:Ddx1	UTSW	12	13220748	missense	probably damaging	0.97
X0011:Ddx1	UTSW	12	13229415	missense	probably damaging	1.00
X0028:Ddx1	UTSW	12	13243866	missense	probably benign	0.00
Z1177:Ddx1	UTSW	12	13229259	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- AAGTAATCCCGTGTCAGGACC -3'
(R):5'- TGAAGTAGAAAGTGGCATTTTGCTG -3'

Sequencing Primer
(F):5'- ATCAGATGCTCAAGTCCTTGG -3'
(R):5'- GAAAGTGGCATTTTGCTGTTTTAAAG -3'

Posted On

2019-11-22