Mutagenetix > Incidental Mutation

Incidental Mutation 'R7743:Trdn'

596675

Institutional Source

Beutler Lab

Gene Symbol

Trdn

Ensembl Gene

ENSMUSG00000019787

Gene Name

triadin

Synonyms

triadin 2, triadin 1, 2310045H21Rik, EG432451, triadin-2, triadin-3, triadin-1, triadin 3

MMRRC Submission

045799-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.084) question?

Stock #

R7743 (G1)

Quality Score

158.009

Status

Validated

Chromosome

Chromosomal Location

32959479-33352705 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to T at 33133058 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Stop codon at position 107 (E107*)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000095762]

AlphaFold

E9Q9K5

Predicted Effect

probably benign
Transcript: ENSMUST00000095762

SMART Domains

Protein: ENSMUSP00000093436
Gene: ENSMUSG00000019787

Domain	Start	End	E-Value	Type
SCOP:d1lnqa2	49	116	1e-4	SMART
low complexity region	147	158	N/A	INTRINSIC
low complexity region	166	182	N/A	INTRINSIC
low complexity region	198	223	N/A	INTRINSIC
low complexity region	229	250	N/A	INTRINSIC
coiled coil region	306	333	N/A	INTRINSIC
low complexity region	342	352	N/A	INTRINSIC
low complexity region	380	396	N/A	INTRINSIC
coiled coil region	417	437	N/A	INTRINSIC
low complexity region	448	484	N/A	INTRINSIC
low complexity region	539	551	N/A	INTRINSIC
low complexity region	559	572	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000219211
AA Change: E107*

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

97% (77/79)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an integral membrane protein that contains a single transmembrane domain. As similar protein in rabbits plays a role in skeletal muscle excitation-contraction coupling as part of the calcium release complex in association with the ryanodine receptor. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and single nucleotide polymorphisms in this gene may be markers for IgA nephritis. [provided by RefSeq, Oct 2011]
PHENOTYPE: Mice homozygous for a null allele exhibit a loss of transverse orientation of triads within skeletal muscle cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	A	G	3: 137,774,516 (GRCm39)	E1235G	probably damaging	Het
Abtb3	A	T	10: 85,460,813 (GRCm39)	I569F	possibly damaging	Het
Adam6a	A	G	12: 113,508,152 (GRCm39)	D175G	probably benign	Het
Adgrf4	A	T	17: 42,983,453 (GRCm39)	C76*	probably null	Het
Agbl3	C	T	6: 34,823,765 (GRCm39)	T815I	probably damaging	Het
Ahnak2	A	G	12: 112,748,383 (GRCm39)	V488A	not run	Het
Akip1	T	A	7: 109,311,035 (GRCm39)	S192T	probably benign	Het
Apc2	G	A	10: 80,140,749 (GRCm39)	M201I	probably damaging	Het
Arel1	G	T	12: 84,987,043 (GRCm39)	N124K	probably damaging	Het
Atp10a	A	T	7: 58,453,457 (GRCm39)	H845L	probably damaging	Het
Atp2a2	A	G	5: 122,599,634 (GRCm39)	Y586H	probably benign	Het
BC051019	A	G	7: 109,315,266 (GRCm39)	Y330H	probably damaging	Het
Ccng2	C	G	5: 93,421,202 (GRCm39)	S237R	probably benign	Het
Chek2	T	G	5: 110,987,916 (GRCm39)		probably null	Het
Cldn14	A	G	16: 93,716,615 (GRCm39)	L77S	probably damaging	Het
Cox15	T	C	19: 43,728,380 (GRCm39)	K298E	possibly damaging	Het
Cpt1b	G	T	15: 89,305,607 (GRCm39)	D369E	probably benign	Het
Cpxm1	T	C	2: 130,235,342 (GRCm39)	N550S	probably benign	Het
Csdc2	A	G	15: 81,833,399 (GRCm39)	E132G	possibly damaging	Het
Cyb5d2	A	T	11: 72,669,702 (GRCm39)	C219S	probably damaging	Het
Erbb4	T	C	1: 68,367,278 (GRCm39)	T480A	probably benign	Het
Fndc1	G	A	17: 7,983,969 (GRCm39)	T1319I	unknown	Het
Gm5773	T	G	3: 93,680,565 (GRCm39)	V79G	probably damaging	Het
Hsf2	G	A	10: 57,387,431 (GRCm39)		probably null	Het
Itgb2l	T	C	16: 96,238,608 (GRCm39)	T64A	probably damaging	Het
Kifc5b	T	C	17: 27,143,176 (GRCm39)	V316A	probably damaging	Het
Ktn1	A	G	14: 47,907,750 (GRCm39)	D279G	probably damaging	Het
Lonrf1	T	C	8: 36,716,206 (GRCm39)	E143G	possibly damaging	Het
Mroh9	C	T	1: 162,852,122 (GRCm39)	E856K	probably benign	Het
Muc16	T	C	9: 18,568,773 (GRCm39)	T1249A	unknown	Het
Myh6	G	A	14: 55,194,607 (GRCm39)	R721W	probably damaging	Het
Myo6	A	T	9: 80,183,611 (GRCm39)	I669F	unknown	Het
N4bp2	A	G	5: 65,965,802 (GRCm39)	T1284A	probably damaging	Het
Npr3	A	G	15: 11,905,724 (GRCm39)	M1T	probably null	Het
Obscn	C	T	11: 58,990,603 (GRCm39)	V1657M	probably damaging	Het
Olfr908	A	G	9: 38,427,624 (GRCm39)	T99A	possibly damaging	Het
Or52a20	A	G	7: 103,366,560 (GRCm39)	E253G	possibly damaging	Het
Or52p2	A	T	7: 102,237,638 (GRCm39)	F104Y	probably benign	Het
Otud6b	C	A	4: 14,818,389 (GRCm39)	A171S	possibly damaging	Het
Pdcd2l	A	C	7: 33,892,256 (GRCm39)	D204E	probably benign	Het
Pdia2	T	C	17: 26,417,842 (GRCm39)	S56G	probably benign	Het
Plcxd1	G	A	5: 110,250,369 (GRCm39)	E237K	possibly damaging	Het
Plekha5	A	T	6: 140,501,712 (GRCm39)	R633S	probably damaging	Het
Pnpla6	T	C	8: 3,586,594 (GRCm39)	F937L	possibly damaging	Het
Pth2	A	T	7: 44,830,733 (GRCm39)	M6L	probably benign	Het
Ptprd	T	A	4: 76,004,326 (GRCm39)	K143I	probably damaging	Het
Rhbdf2	T	C	11: 116,492,427 (GRCm39)	D487G	probably benign	Het
Rhbdf2	A	T	11: 116,494,775 (GRCm39)	D300E	probably benign	Het
Rock2	G	A	12: 17,026,048 (GRCm39)	V1265I	probably damaging	Het
Rsf1	CGGC	CGGCGGCGGAGGC	7: 97,229,139 (GRCm39)		probably benign	Het
Rtn4	T	A	11: 29,683,790 (GRCm39)	Y1027*	probably null	Het
Rxfp3	A	G	15: 11,037,216 (GRCm39)	L52P	probably damaging	Het
Sel1l3	A	G	5: 53,293,227 (GRCm39)	Y830H	probably benign	Het
Serpinb3d	C	T	1: 107,007,088 (GRCm39)	V207I	probably damaging	Het
Sipa1l2	T	C	8: 126,190,972 (GRCm39)	E1006G	probably damaging	Het
Slc22a19	C	T	19: 7,661,201 (GRCm39)	M324I	possibly damaging	Het
Slc37a1	T	A	17: 31,535,159 (GRCm39)	F106I	probably damaging	Het
Snx14	A	T	9: 88,280,402 (GRCm39)	S518T	probably benign	Het
Sp2	T	C	11: 96,851,935 (GRCm39)	T330A	probably damaging	Het
Spata13	A	T	14: 60,993,698 (GRCm39)	H1050L	probably damaging	Het
Sptssa	A	C	12: 54,703,201 (GRCm39)	V23G	possibly damaging	Het
Syt3	A	T	7: 44,042,091 (GRCm39)	I317F	probably damaging	Het
Tars1	A	C	15: 11,399,458 (GRCm39)		probably null	Het
Tead3	T	A	17: 28,551,801 (GRCm39)	T431S	probably benign	Het
Tiam2	G	A	17: 3,568,431 (GRCm39)	E1526K	possibly damaging	Het
Tnni3	G	A	7: 4,524,891 (GRCm39)	P12L	probably benign	Het
Topaz1	A	G	9: 122,614,201 (GRCm39)	H1207R	probably benign	Het
Trp63	A	G	16: 25,701,375 (GRCm39)	N483S	probably benign	Het
Trpm4	A	G	7: 44,957,762 (GRCm39)	S1009P	probably benign	Het
Trpm6	T	C	19: 18,804,772 (GRCm39)	V908A	probably benign	Het
Tsen34	A	T	7: 3,697,601 (GRCm39)	M25L	possibly damaging	Het
Ttn	T	C	2: 76,781,827 (GRCm39)	E1073G	unknown	Het
Uaca	A	T	9: 60,783,677 (GRCm39)	I1380F	probably damaging	Het
Ubr3	A	G	2: 69,774,793 (GRCm39)	T539A	probably benign	Het
Ugt1a5	T	A	1: 88,094,117 (GRCm39)	M115K	probably benign	Het
Unc45b	A	T	11: 82,813,726 (GRCm39)	I378F	probably damaging	Het
Unk	G	A	11: 115,940,262 (GRCm39)	R205Q	possibly damaging	Het
Ush2a	T	A	1: 188,542,376 (GRCm39)	L3314Q	probably benign	Het
Vezt	A	G	10: 93,816,286 (GRCm39)	L475P	probably damaging	Het
Vmn2r115	C	T	17: 23,564,772 (GRCm39)	Q220*	probably null	Het
Yap1	T	C	9: 7,962,379 (GRCm39)	Q223R	probably benign	Het
Zdhhc7	G	A	8: 120,813,467 (GRCm39)	T114M	possibly damaging	Het
Zwilch	A	C	9: 64,060,217 (GRCm39)	C374G	probably damaging	Het

Other mutations in Trdn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00839:Trdn	APN	10	33,347,602 (GRCm39)	critical splice donor site	probably null
IGL01310:Trdn	APN	10	33,181,094 (GRCm39)	splice site	probably benign
IGL01313:Trdn	APN	10	33,076,216 (GRCm39)	missense	probably damaging	1.00
IGL02177:Trdn	APN	10	33,015,169 (GRCm39)	missense	probably damaging	1.00
IGL02631:Trdn	APN	10	33,239,972 (GRCm39)	critical splice acceptor site	probably null
IGL02732:Trdn	APN	10	33,344,195 (GRCm39)	splice site	probably null
IGL03131:Trdn	APN	10	33,274,410 (GRCm39)	nonsense	probably null
Button	UTSW	10	33,350,449 (GRCm39)	missense	probably damaging	0.97
R0463:Trdn	UTSW	10	33,342,417 (GRCm39)	critical splice acceptor site	probably null
R0610:Trdn	UTSW	10	33,350,449 (GRCm39)	missense	probably damaging	0.97
R0786:Trdn	UTSW	10	33,181,077 (GRCm39)	missense	probably benign	0.22
R0827:Trdn	UTSW	10	33,275,154 (GRCm39)	splice site	probably benign
R1511:Trdn	UTSW	10	33,342,448 (GRCm39)	missense	probably benign	0.18
R1623:Trdn	UTSW	10	33,134,098 (GRCm39)	missense	possibly damaging	0.82
R1760:Trdn	UTSW	10	33,109,883 (GRCm39)	missense	possibly damaging	0.92
R1766:Trdn	UTSW	10	33,240,004 (GRCm39)	missense	probably damaging	1.00
R1884:Trdn	UTSW	10	33,133,091 (GRCm39)	missense	probably benign	0.38
R2297:Trdn	UTSW	10	33,211,008 (GRCm39)	missense	probably damaging	1.00
R2396:Trdn	UTSW	10	33,071,978 (GRCm39)	missense	probably damaging	1.00
R3436:Trdn	UTSW	10	33,344,191 (GRCm39)	critical splice donor site	probably null
R3686:Trdn	UTSW	10	33,344,185 (GRCm39)	missense	probably benign	0.20
R3696:Trdn	UTSW	10	33,181,028 (GRCm39)	splice site	probably null
R3701:Trdn	UTSW	10	33,210,980 (GRCm39)	missense	probably damaging	0.99
R3712:Trdn	UTSW	10	33,033,162 (GRCm39)	missense	probably benign	0.03
R4062:Trdn	UTSW	10	33,133,083 (GRCm39)	missense	probably benign	0.05
R4249:Trdn	UTSW	10	33,326,994 (GRCm39)	missense	probably benign	0.09
R4289:Trdn	UTSW	10	33,340,578 (GRCm39)	missense	probably benign	0.00
R4646:Trdn	UTSW	10	33,071,977 (GRCm39)	nonsense	probably null
R4647:Trdn	UTSW	10	33,071,977 (GRCm39)	nonsense	probably null
R4648:Trdn	UTSW	10	33,071,977 (GRCm39)	nonsense	probably null
R4766:Trdn	UTSW	10	33,350,502 (GRCm39)	missense	probably benign	0.04
R4776:Trdn	UTSW	10	33,275,078 (GRCm39)	splice site	probably null
R4880:Trdn	UTSW	10	33,347,575 (GRCm39)	missense	probably benign	0.26
R4898:Trdn	UTSW	10	33,350,413 (GRCm39)	missense	probably damaging	0.96
R5017:Trdn	UTSW	10	33,344,155 (GRCm39)	missense	probably benign	0.05
R5300:Trdn	UTSW	10	33,071,978 (GRCm39)	missense	probably damaging	1.00
R5320:Trdn	UTSW	10	33,209,247 (GRCm39)	critical splice donor site	probably null
R6089:Trdn	UTSW	10	33,340,571 (GRCm39)	missense	probably benign	0.01
R6216:Trdn	UTSW	10	33,181,065 (GRCm39)	missense	probably damaging	1.00
R6431:Trdn	UTSW	10	33,015,110 (GRCm39)	missense	probably damaging	1.00
R6475:Trdn	UTSW	10	33,340,551 (GRCm39)	splice site	probably null
R6501:Trdn	UTSW	10	33,342,450 (GRCm39)	missense	probably benign	0.02
R6662:Trdn	UTSW	10	33,350,483 (GRCm39)	missense	probably damaging	0.98
R6709:Trdn	UTSW	10	33,340,587 (GRCm39)	missense	probably benign	0.00
R6783:Trdn	UTSW	10	33,314,811 (GRCm39)	missense	probably damaging	0.96
R6906:Trdn	UTSW	10	33,109,944 (GRCm39)	missense	probably benign
R6916:Trdn	UTSW	10	33,033,014 (GRCm39)	missense	probably damaging	1.00
R7291:Trdn	UTSW	10	33,313,732 (GRCm39)	missense	probably null	0.83
R7499:Trdn	UTSW	10	33,072,097 (GRCm39)	missense	probably benign
R7601:Trdn	UTSW	10	33,072,152 (GRCm39)	missense	probably benign	0.00
R8114:Trdn	UTSW	10	32,959,624 (GRCm39)	start gained	probably benign
R8220:Trdn	UTSW	10	33,326,981 (GRCm39)	missense	possibly damaging	0.57
R8228:Trdn	UTSW	10	33,033,014 (GRCm39)	missense	probably damaging	1.00
R8329:Trdn	UTSW	10	33,320,074 (GRCm39)	splice site	probably null
R8918:Trdn	UTSW	10	33,015,117 (GRCm39)	missense	probably benign	0.33
R9304:Trdn	UTSW	10	33,181,087 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- AGCACTATCCATCTTTGAGAGG -3'
(R):5'- GAGACTCATGATCAGCCTGAGC -3'

Sequencing Primer
(F):5'- CCATCTTTGAGAGGGTTACTGTC -3'
(R):5'- GCCTGAGCTAAACAGACAAATTTC -3'

Posted On

2019-11-26